RNA–Protein interactions for RNA: ENST00000529526.5

CTNND1-220, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 6,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-220ENST00000529526 LCE3AQ5TA76 89 aa3.52□□□□□ -1.85
CTNND1-220ENST00000529526 COL7A1Q02388 2944 aa3.51□□□□□ -1.85
CTNND1-220ENST00000529526 KRTAP12-3P60328 96 aa3.5□□□□□ -1.85
CTNND1-220ENST00000529526 CSMD3Q7Z407 3707 aa3.48□□□□□ -1.85
CTNND1-220ENST00000529526 DNAH9Q9NYC9 4486 aa3.44□□□□□ -1.86
CTNND1-220ENST00000529526 DNAH1Q9P2D7 4330 aa3.4□□□□□ -1.87
CTNND1-220ENST00000529526 KRTAP8-1Q8IUC2 63 aa3.34□□□□□ -1.87
CTNND1-220ENST00000529526 KRTAP4-1Q9BYQ7 146 aa3.34□□□□□ -1.87
CTNND1-220ENST00000529526 DNAH5Q8TE73 4624 aa3.34□□□□□ -1.87
CTNND1-220ENST00000529526 KRTAP10-5P60370 271 aa3.33□□□□□ -1.88
CTNND1-220ENST00000529526 DNAH10Q8IVF4 4471 aa3.31□□□□□ -1.88
CTNND1-220ENST00000529526 PLECQ15149 4684 aaKnown RBP3.3□□□□□ -1.88
CTNND1-220ENST00000529526 ANK2Q01484 3957 aa3.29□□□□□ -1.88
CTNND1-220ENST00000529526 MT1HP80294 61 aa3.28□□□□□ -1.88
CTNND1-220ENST00000529526 DNAH2Q9P225 4427 aa3.27□□□□□ -1.89
CTNND1-220ENST00000529526 DNAH3Q8TD57 4116 aa3.27□□□□□ -1.89
CTNND1-220ENST00000529526 DNAH17Q9UFH2 4485 aa3.25□□□□□ -1.89
CTNND1-220ENST00000529526 DNAH11Q96DT5 4516 aa3.25□□□□□ -1.89
CTNND1-220ENST00000529526 VPS13DQ5THJ4 4388 aa3.24□□□□□ -1.89
CTNND1-220ENST00000529526 MT2AP02795 61 aa3.22□□□□□ -1.89
CTNND1-220ENST00000529526 CMYA5Q8N3K9 4069 aa3.21□□□□□ -1.9
CTNND1-220ENST00000529526 PRKDCP78527 4128 aaKnown RBP3.2□□□□□ -1.9
CTNND1-220ENST00000529526 DNHD1Q96M86 4753 aa3.19□□□□□ -1.9
CTNND1-220ENST00000529526 FAT2Q9NYQ8 4349 aa3.19□□□□□ -1.9
CTNND1-220ENST00000529526 STARD9Q9P2P6 4700 aa3.18□□□□□ -1.9
CTNND1-220ENST00000529526 DNAH8Q96JB1 4490 aa3.18□□□□□ -1.9
CTNND1-220ENST00000529526 LRP1BQ9NZR2 4599 aa3.18□□□□□ -1.9
CTNND1-220ENST00000529526 MT1FP04733 61 aa3.17□□□□□ -1.9
CTNND1-220ENST00000529526 SPRR2GQ9BYE4 73 aa3.16□□□□□ -1.9
CTNND1-220ENST00000529526 DYNC1H1Q14204 4646 aaKnown RBP3.15□□□□□ -1.9
CTNND1-220ENST00000529526 DYNC2H1Q8NCM8 4307 aaKnown RBP3.15□□□□□ -1.9
CTNND1-220ENST00000529526 KRTAP19-5Q3LI72 72 aa3.15□□□□□ -1.91
CTNND1-220ENST00000529526 SACSQ9NZJ4 4579 aa3.14□□□□□ -1.91
CTNND1-220ENST00000529526 SPRR2FQ96RM1 72 aa3.12□□□□□ -1.91
CTNND1-220ENST00000529526 KMT2AQ03164 3969 aa3.11□□□□□ -1.91
CTNND1-220ENST00000529526 FAT1Q14517 4588 aa3.11□□□□□ -1.91
CTNND1-220ENST00000529526 FRAS1Q86XX4 4008 aa3.1□□□□□ -1.91
CTNND1-220ENST00000529526 VPS13BQ7Z7G8 4022 aa3.09□□□□□ -1.92
CTNND1-220ENST00000529526 SPRR5A0A1B0GTR4 108 aa3.07□□□□□ -1.92
CTNND1-220ENST00000529526 LCE3CQ5T5A8 94 aa3.07□□□□□ -1.92
CTNND1-220ENST00000529526 KRTAP10-7P60409 375 aaPredicted RBP3.06□□□□□ -1.92
CTNND1-220ENST00000529526 DNAH7Q8WXX0 4024 aa3.05□□□□□ -1.92
CTNND1-220ENST00000529526 LYSTQ99698 3801 aa3.05□□□□□ -1.92
CTNND1-220ENST00000529526 RYR1P21817 5038 aa3.03□□□□□ -1.92
CTNND1-220ENST00000529526 APOBP04114 4563 aaKnown RBP3.03□□□□□ -1.92
CTNND1-220ENST00000529526 KRTAP17-1Q9BYP8 105 aa3.02□□□□□ -1.93
CTNND1-220ENST00000529526 DNAH6Q9C0G6 4158 aa3.02□□□□□ -1.93
CTNND1-220ENST00000529526 HECTD4Q9Y4D8 3996 aa3□□□□□ -1.93
CTNND1-220ENST00000529526 KRTAP9-6A0A140TA67 174 aa2.94□□□□□ -1.94
CTNND1-220ENST00000529526 KRTAP19-1Q8IUB9 90 aa2.93□□□□□ -1.94
CTNND1-220ENST00000529526 SPRR2EP22531 72 aa2.93□□□□□ -1.94
CTNND1-220ENST00000529526 SPRR2BP35325 72 aa2.93□□□□□ -1.94
CTNND1-220ENST00000529526 SPRR2AP35326 72 aa2.93□□□□□ -1.94
CTNND1-220ENST00000529526 HYDINQ4G0P3 5121 aa2.93□□□□□ -1.94
CTNND1-220ENST00000529526 FAT3Q8TDW7 4589 aa2.93□□□□□ -1.94
CTNND1-220ENST00000529526 RYR3Q15413 4870 aa2.92□□□□□ -1.94
CTNND1-220ENST00000529526 RYR2Q92736 4967 aa2.92□□□□□ -1.94
CTNND1-220ENST00000529526 LCE3BQ5TA77 95 aa2.92□□□□□ -1.94
CTNND1-220ENST00000529526 MT1XP80297 61 aa2.91□□□□□ -1.94
CTNND1-220ENST00000529526 KRTAP19-8Q3LI54 63 aa2.91□□□□□ -1.94
CTNND1-220ENST00000529526 KIAA1109Q2LD37 5005 aa2.89□□□□□ -1.95
CTNND1-220ENST00000529526 MT1GP13640 62 aa2.89□□□□□ -1.95
CTNND1-220ENST00000529526 PKHD1P08F94 4074 aa2.88□□□□□ -1.95
CTNND1-220ENST00000529526 PKD1P98161 4303 aa2.87□□□□□ -1.95
CTNND1-220ENST00000529526 MYCBP2O75592 4640 aa2.86□□□□□ -1.95
CTNND1-220ENST00000529526 MT1BP07438 61 aa2.86□□□□□ -1.95
CTNND1-220ENST00000529526 KRTAP4-8A0A0G2JLE6 195 aa2.85□□□□□ -1.95
CTNND1-220ENST00000529526 KRTAP4-8Q9BYQ9 185 aa2.85□□□□□ -1.95
CTNND1-220ENST00000529526 KMT2CQ8NEZ4 4911 aaKnown RBP2.84□□□□□ -1.95
CTNND1-220ENST00000529526 LRP1Q07954 4544 aaKnown RBP2.84□□□□□ -1.96
CTNND1-220ENST00000529526 KRTAP9-8Q9BYQ0 159 aa2.83□□□□□ -1.96
CTNND1-220ENST00000529526 SPRR2DP22532 72 aa2.83□□□□□ -1.96
CTNND1-220ENST00000529526 KRTAP19-4Q3LI73 84 aa2.82□□□□□ -1.96
CTNND1-220ENST00000529526 HSPG2P98160 4391 aa2.81□□□□□ -1.96
CTNND1-220ENST00000529526 KRTAP9-2Q9BYQ4 174 aa2.8□□□□□ -1.96
CTNND1-220ENST00000529526 LCE2BO14633 110 aa2.8□□□□□ -1.96
CTNND1-220ENST00000529526 BIRC6Q9NR09 4857 aa2.79□□□□□ -1.96
CTNND1-220ENST00000529526 KRTAP12-4P60329 112 aa2.79□□□□□ -1.96
CTNND1-220ENST00000529526 LPAP08519 4548 aa2.78□□□□□ -1.97
CTNND1-220ENST00000529526 KRTAP9-3Q9BYQ3 159 aa2.77□□□□□ -1.97
CTNND1-220ENST00000529526 LCE2CQ5TA81 110 aa2.77□□□□□ -1.97
CTNND1-220ENST00000529526 PKHD1L1Q86WI1 4243 aa2.74□□□□□ -1.97
CTNND1-220ENST00000529526 HERC1Q15751 4861 aa2.73□□□□□ -1.97
CTNND1-220ENST00000529526 MT3P25713 68 aa2.72□□□□□ -1.97
CTNND1-220ENST00000529526 KRTAP4-7Q9BYR0 210 aa2.71□□□□□ -1.98
CTNND1-220ENST00000529526 HERC2O95714 4834 aa2.71□□□□□ -1.98
CTNND1-220ENST00000529526 LCE3DQ9BYE3 92 aa2.69□□□□□ -1.98
CTNND1-220ENST00000529526 TNXBP22105 4242 aa2.68□□□□□ -1.98
CTNND1-220ENST00000529526 KRTAP9-7A8MTY7 169 aa2.67□□□□□ -1.98
CTNND1-220ENST00000529526 EPPK1P58107 5090 aaKnown RBP2.67□□□□□ -1.98
CTNND1-220ENST00000529526 LRP2P98164 4655 aa2.66□□□□□ -1.98
CTNND1-220ENST00000529526 KRTAP20-1Q3LI63 56 aa2.65□□□□□ -1.99
CTNND1-220ENST00000529526 KRTAP19-3Q7Z4W3 81 aa2.64□□□□□ -1.99
CTNND1-220ENST00000529526 MT1LQ93083 61 aa2.63□□□□□ -1.99
CTNND1-220ENST00000529526 LCE3EQ5T5B0 92 aa2.63□□□□□ -1.99
CTNND1-220ENST00000529526 PCLOQ9Y6V0 5065 aa2.61□□□□□ -1.99
CTNND1-220ENST00000529526 MT1EP04732 61 aa2.61□□□□□ -1.99
CTNND1-220ENST00000529526 ABCA13Q86UQ4 5058 aa2.61□□□□□ -1.99
CTNND1-220ENST00000529526 KRTAP19-2Q3LHN2 52 aa2.6□□□□□ -1.99
CTNND1-220ENST00000529526 MUC17Q685J3 4493 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms