RNA–Protein interactions for RNA: ENST00000522552.5

SKP1-209, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SKP1, Length 1,683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-209ENST00000522552 MYO18BQ8IUG5 2567 aa0.52□□□□□ -2.33
SKP1-209ENST00000522552 TEP1Q99973 2627 aaKnown RBP0.52□□□□□ -2.33
SKP1-209ENST00000522552 SVEP1Q4LDE5 3571 aa0.52□□□□□ -2.33
SKP1-209ENST00000522552 PKHD1P08F94 4074 aa0.51□□□□□ -2.33
SKP1-209ENST00000522552 FSIP2Q5CZC0 6907 aa0.51□□□□□ -2.33
SKP1-209ENST00000522552 ACACBO00763 2458 aa0.51□□□□□ -2.33
SKP1-209ENST00000522552 NBPF19A0A087WUL8 3843 aa0.51□□□□□ -2.33
SKP1-209ENST00000522552 ZANQ9Y493 2812 aa0.51□□□□□ -2.33
SKP1-209ENST00000522552 FAT3Q8TDW7 4589 aa0.5□□□□□ -2.33
SKP1-209ENST00000522552 DEFB110Q30KQ9 67 aa0.5□□□□□ -2.33
SKP1-209ENST00000522552 USP9YO00507 2555 aaPredicted RBP0.5□□□□□ -2.33
SKP1-209ENST00000522552 DNAH7Q8WXX0 4024 aa0.5□□□□□ -2.33
SKP1-209ENST00000522552 CELSR3Q9NYQ7 3312 aa0.5□□□□□ -2.33
SKP1-209ENST00000522552 TGP01266 2768 aa0.48□□□□□ -2.33
SKP1-209ENST00000522552 LEAP2Q969E1 77 aa0.48□□□□□ -2.33
SKP1-209ENST00000522552 USP9XQ93008 2570 aaPredicted RBP0.47□□□□□ -2.33
SKP1-209ENST00000522552 TLN2Q9Y4G6 2542 aa0.47□□□□□ -2.33
SKP1-209ENST00000522552 KRTAP6-2Q3LI66 62 aa0.46□□□□□ -2.34
SKP1-209ENST00000522552 WDR87Q6ZQQ6 2873 aa0.46□□□□□ -2.34
SKP1-209ENST00000522552 TOMM7Q9P0U1 55 aa0.46□□□□□ -2.34
SKP1-209ENST00000522552 DNAH1Q9P2D7 4330 aa0.45□□□□□ -2.34
SKP1-209ENST00000522552 STAB2Q8WWQ8 2551 aa0.44□□□□□ -2.34
SKP1-209ENST00000522552 TRIOO75962 3097 aa0.44□□□□□ -2.34
SKP1-209ENST00000522552 SPRR2AP35326 72 aa0.43□□□□□ -2.34
SKP1-209ENST00000522552 NBEAL1Q6ZS30 2694 aa0.43□□□□□ -2.34
SKP1-209ENST00000522552 FAT1Q14517 4588 aa0.43□□□□□ -2.34
SKP1-209ENST00000522552 ITPR3Q14573 2671 aa0.42□□□□□ -2.34
SKP1-209ENST00000522552 LRP2P98164 4655 aa0.42□□□□□ -2.34
SKP1-209ENST00000522552 PHGR1C9JFL3 82 aa0.42□□□□□ -2.34
SKP1-209ENST00000522552 ARHGAP5-AS1Q96IT6 56 aa0.42□□□□□ -2.34
SKP1-209ENST00000522552 MXRA5Q9NR99 2828 aa0.41□□□□□ -2.34
SKP1-209ENST00000522552 RELNP78509 3460 aa0.41□□□□□ -2.34
SKP1-209ENST00000522552 MT1AP04731 61 aa0.4□□□□□ -2.34
SKP1-209ENST00000522552 MGAM2Q2M2H8 2515 aa0.4□□□□□ -2.35
SKP1-209ENST00000522552 SPART-AS1P0CW21 52 aa0.39□□□□□ -2.35
SKP1-209ENST00000522552 NEBP20929 6669 aa0.39□□□□□ -2.35
SKP1-209ENST00000522552 LAMA1P25391 3075 aa0.39□□□□□ -2.35
SKP1-209ENST00000522552 ADGRG4Q8IZF6 3080 aa0.39□□□□□ -2.35
SKP1-209ENST00000522552 DNAH10Q8IVF4 4471 aa0.38□□□□□ -2.35
SKP1-209ENST00000522552 CSMD1Q96PZ7 3565 aa0.37□□□□□ -2.35
SKP1-209ENST00000522552 ITPR1Q14643 2758 aa0.36□□□□□ -2.35
SKP1-209ENST00000522552 CFAP54Q96N23 3096 aa0.36□□□□□ -2.35
SKP1-209ENST00000522552 MDN1Q9NU22 5596 aa0.36□□□□□ -2.35
SKP1-209ENST00000522552 KRTAP8-1Q8IUC2 63 aa0.36□□□□□ -2.35
SKP1-209ENST00000522552 DMXL2Q8TDJ6 3036 aa0.36□□□□□ -2.35
SKP1-209ENST00000522552 SPRR2EP22531 72 aa0.35□□□□□ -2.35
SKP1-209ENST00000522552 MGAQ8IWI9 3026 aa0.35□□□□□ -2.35
SKP1-209ENST00000522552 PLECQ15149 4684 aaKnown RBP0.32□□□□□ -2.36
SKP1-209ENST00000522552 SPTAN1Q13813 2472 aaKnown RBP0.32□□□□□ -2.36
SKP1-209ENST00000522552 SPRR2FQ96RM1 72 aa0.32□□□□□ -2.36
SKP1-209ENST00000522552 DEFB104AQ8WTQ1 72 aa0.31□□□□□ -2.36
SKP1-209ENST00000522552 DSTQ03001 7570 aaKnown RBP0.31□□□□□ -2.36
SKP1-209ENST00000522552 C5orf42Q9H799 3197 aa0.29□□□□□ -2.36
SKP1-209ENST00000522552 LAMA3Q16787 3333 aa0.29□□□□□ -2.36
SKP1-209ENST00000522552 HERC1Q15751 4861 aa0.28□□□□□ -2.36
SKP1-209ENST00000522552 DOPEY1Q5JWR5 2465 aa0.28□□□□□ -2.36
SKP1-209ENST00000522552 SMR3BP02814 79 aaPredicted RBP0.28□□□□□ -2.36
SKP1-209ENST00000522552 KRTAP19-5Q3LI72 72 aa0.28□□□□□ -2.36
SKP1-209ENST00000522552 LINC01590Q5TEZ4 76 aa0.28□□□□□ -2.36
SKP1-209ENST00000522552 TTTY10Q9BZA0 68 aa0.28□□□□□ -2.36
SKP1-209ENST00000522552 CMYA5Q8N3K9 4069 aa0.28□□□□□ -2.36
SKP1-209ENST00000522552 SSPOA2VEC9 5147 aa0.27□□□□□ -2.37
SKP1-209ENST00000522552 CEP250Q9BV73 2442 aa0.26□□□□□ -2.37
SKP1-209ENST00000522552 SMG1Q96Q15 3661 aaKnown RBP0.26□□□□□ -2.37
SKP1-209ENST00000522552 DYNC1H1Q14204 4646 aaKnown RBP0.26□□□□□ -2.37
SKP1-209ENST00000522552 TRRAPQ9Y4A5 3859 aa0.26□□□□□ -2.37
SKP1-209ENST00000522552 ATMQ13315 3056 aa0.25□□□□□ -2.37
SKP1-209ENST00000522552 PRCDQ00LT1 54 aa0.24□□□□□ -2.37
SKP1-209ENST00000522552 SRCAPQ6ZRS2 3230 aa0.23□□□□□ -2.37
SKP1-209ENST00000522552 LRBAP50851 2863 aa0.22□□□□□ -2.37
SKP1-209ENST00000522552 DNAH17Q9UFH2 4485 aa0.22□□□□□ -2.37
SKP1-209ENST00000522552 TEX15Q9BXT5 2789 aa0.21□□□□□ -2.38
SKP1-209ENST00000522552 MUC2Q02817 5179 aa0.21□□□□□ -2.38
SKP1-209ENST00000522552 H3BSH0 61 aa0.21□□□□□ -2.38
SKP1-209ENST00000522552 STARD9Q9P2P6 4700 aa0.21□□□□□ -2.38
SKP1-209ENST00000522552 DEFB1P60022 68 aa0.18□□□□□ -2.38
SKP1-209ENST00000522552 CFAP46Q8IYW2 2715 aa0.18□□□□□ -2.38
SKP1-209ENST00000522552 PCLOQ9Y6V0 5065 aa0.18□□□□□ -2.38
SKP1-209ENST00000522552 MUC17Q685J3 4493 aa0.18□□□□□ -2.38
SKP1-209ENST00000522552 PRUNE2Q8WUY3 3088 aa0.17□□□□□ -2.38
SKP1-209ENST00000522552 K7EIM0 57 aa0.17□□□□□ -2.38
SKP1-209ENST00000522552 SPRR2GQ9BYE4 73 aa0.16□□□□□ -2.38
SKP1-209ENST00000522552 KMT2CQ8NEZ4 4911 aaKnown RBP0.16□□□□□ -2.38
SKP1-209ENST00000522552 DNAH5Q8TE73 4624 aa0.15□□□□□ -2.39
SKP1-209ENST00000522552 DMDP11532 3685 aa0.15□□□□□ -2.39
SKP1-209ENST00000522552 DNAH12Q6ZR08 3092 aa0.13□□□□□ -2.39
SKP1-209ENST00000522552 UBR4Q5T4S7 5183 aa0.13□□□□□ -2.39
SKP1-209ENST00000522552 SZT2Q5T011 3432 aa0.13□□□□□ -2.39
SKP1-209ENST00000522552 FRYLO94915 3013 aa0.13□□□□□ -2.39
SKP1-209ENST00000522552 USH2AO75445 5202 aa0.11□□□□□ -2.39
SKP1-209ENST00000522552 VPS13CQ709C8 3753 aa0.11□□□□□ -2.39
SKP1-209ENST00000522552 MYO9AB2RTY4 2548 aa0.11□□□□□ -2.39
SKP1-209ENST00000522552 NIPBLQ6KC79 2804 aaeCLIP0.1□□□□□ -2.39
SKP1-209ENST00000522552 MUC3AQ02505 3323 aa0.1□□□□□ -2.39
SKP1-209ENST00000522552 RHPN1-AS1Q9BWJ2 59 aa0.09□□□□□ -2.39
SKP1-209ENST00000522552 CSMD2Q7Z408 3487 aa0.09□□□□□ -2.4
SKP1-209ENST00000522552 ITPR2Q14571 2701 aa0.09□□□□□ -2.4
SKP1-209ENST00000522552 MT1HP80294 61 aa0.08□□□□□ -2.4
SKP1-209ENST00000522552 TLN1Q9Y490 2541 aaKnown RBP0.07□□□□□ -2.4
SKP1-209ENST00000522552 LAMA2P24043 3122 aaKnown RBP0.07□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms