RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 WFDC13Q8IUB5 93 aa3.33□□□□□ -1.88
LSM1-202ENST00000520286 PRO2289Q9P1D8 64 aa3.33□□□□□ -1.88
LSM1-202ENST00000520286 UBR4Q5T4S7 5183 aa3.33□□□□□ -1.88
LSM1-202ENST00000520286 NUPR2A6NF83 97 aa3.32□□□□□ -1.88
LSM1-202ENST00000520286 DEFB105AQ8NG35 78 aa3.32□□□□□ -1.88
LSM1-202ENST00000520286 HERC1Q15751 4861 aa3.31□□□□□ -1.88
LSM1-202ENST00000520286 A0A096LPF7 62 aa3.31□□□□□ -1.88
LSM1-202ENST00000520286 A0A0G2JQZ4 141 aa3.31□□□□□ -1.88
LSM1-202ENST00000520286 DNAH10Q8IVF4 4471 aa3.3□□□□□ -1.88
LSM1-202ENST00000520286 DEFB131BA0A096LNP1 70 aa3.3□□□□□ -1.88
LSM1-202ENST00000520286 MMP24-AS1A0A0U1RRL7 71 aa3.29□□□□□ -1.88
LSM1-202ENST00000520286 WFDC10BQ8IUB3 73 aa3.29□□□□□ -1.88
LSM1-202ENST00000520286 LINC00472Q9H8W2 130 aa3.29□□□□□ -1.88
LSM1-202ENST00000520286 KRTAP6-3Q3LI67 103 aa3.28□□□□□ -1.88
LSM1-202ENST00000520286 SPAG11AQ6PDA7 123 aa3.28□□□□□ -1.88
LSM1-202ENST00000520286 TP53AIP1Q9HCN2 124 aa3.28□□□□□ -1.88
LSM1-202ENST00000520286 ALMS1Q8TCU4 4167 aa3.28□□□□□ -1.88
LSM1-202ENST00000520286 KMT2AQ03164 3969 aa3.27□□□□□ -1.89
LSM1-202ENST00000520286 RPL37AP61513 92 aaKnown RBP3.27□□□□□ -1.89
LSM1-202ENST00000520286 SPATA8Q6RVD6 105 aa3.27□□□□□ -1.89
LSM1-202ENST00000520286 HECTD4Q9Y4D8 3996 aa3.27□□□□□ -1.89
LSM1-202ENST00000520286 A0A087WSZ3 146 aa3.26□□□□□ -1.89
LSM1-202ENST00000520286 SPRR1BP22528 89 aa3.26□□□□□ -1.89
LSM1-202ENST00000520286 TPRXLQ17RH7 258 aa3.26□□□□□ -1.89
LSM1-202ENST00000520286 H3BNG1 76 aa3.25□□□□□ -1.89
LSM1-202ENST00000520286 APLNQ9ULZ1 77 aa3.25□□□□□ -1.89
LSM1-202ENST00000520286 DNAH11Q96DT5 4516 aa3.24□□□□□ -1.89
LSM1-202ENST00000520286 PCOTHQ58A44 107 aa3.24□□□□□ -1.89
LSM1-202ENST00000520286 VPS13DQ5THJ4 4388 aa3.24□□□□□ -1.89
LSM1-202ENST00000520286 KRTAP13-1Q8IUC0 172 aa3.23□□□□□ -1.89
LSM1-202ENST00000520286 DYNC1H1Q14204 4646 aaKnown RBP3.23□□□□□ -1.89
LSM1-202ENST00000520286 RETNLBQ9BQ08 111 aa3.22□□□□□ -1.89
LSM1-202ENST00000520286 SPART-AS1P0CW21 52 aa3.21□□□□□ -1.9
LSM1-202ENST00000520286 LINC01556Q5JQF7 62 aa3.21□□□□□ -1.9
LSM1-202ENST00000520286 Q96NJ1 140 aa3.21□□□□□ -1.9
LSM1-202ENST00000520286 HSPG2P98160 4391 aa3.21□□□□□ -1.9
LSM1-202ENST00000520286 FAT2Q9NYQ8 4349 aa3.2□□□□□ -1.9
LSM1-202ENST00000520286 DNAH2Q9P225 4427 aa3.2□□□□□ -1.9
LSM1-202ENST00000520286 DMBT1Q9UGM3 2413 aaPredicted RBP3.2□□□□□ -1.9
LSM1-202ENST00000520286 DEFB135Q30KP9 77 aa3.19□□□□□ -1.9
LSM1-202ENST00000520286 CSAG1Q6PB30 78 aa3.19□□□□□ -1.9
LSM1-202ENST00000520286 DMAC1Q96GE9 116 aa3.19□□□□□ -1.9
LSM1-202ENST00000520286 DNAH17Q9UFH2 4485 aa3.19□□□□□ -1.9
LSM1-202ENST00000520286 PKD1P98161 4303 aa3.18□□□□□ -1.9
LSM1-202ENST00000520286 DEFB4AO15263 64 aa3.18□□□□□ -1.9
LSM1-202ENST00000520286 PKHD1P08F94 4074 aa3.17□□□□□ -1.9
LSM1-202ENST00000520286 ACYP2P14621 99 aa3.17□□□□□ -1.9
LSM1-202ENST00000520286 SPACA4Q8TDM5 124 aa3.17□□□□□ -1.9
LSM1-202ENST00000520286 APOBP04114 4563 aaKnown RBP3.16□□□□□ -1.9
LSM1-202ENST00000520286 UQCR11O14957 56 aa3.16□□□□□ -1.9
LSM1-202ENST00000520286 HTN3P15516 51 aa3.16□□□□□ -1.9
LSM1-202ENST00000520286 MIR22HGQ0VDD5 57 aa3.16□□□□□ -1.9
LSM1-202ENST00000520286 C1orf134Q5TEV5 83 aa3.16□□□□□ -1.9
LSM1-202ENST00000520286 MRPL34Q9BQ48 92 aaKnown RBP3.16□□□□□ -1.9
LSM1-202ENST00000520286 KRTAP4-4Q9BYR3 166 aa3.16□□□□□ -1.9
LSM1-202ENST00000520286 A0A1B0GU69 56 aa3.15□□□□□ -1.91
LSM1-202ENST00000520286 PRLHP81277 87 aa3.15□□□□□ -1.91
LSM1-202ENST00000520286 SRRM2Q9UQ35 2752 aaKnown RBP3.13□□□□□ -1.91
LSM1-202ENST00000520286 ROMO1P60602 79 aa3.13□□□□□ -1.91
LSM1-202ENST00000520286 LRP1BQ9NZR2 4599 aa3.13□□□□□ -1.91
LSM1-202ENST00000520286 Q5VSD8 79 aa3.12□□□□□ -1.91
LSM1-202ENST00000520286 DNAH5Q8TE73 4624 aa3.12□□□□□ -1.91
LSM1-202ENST00000520286 KRTAP12-3P60328 96 aa3.11□□□□□ -1.91
LSM1-202ENST00000520286 KRTAP5-4Q6L8H1 288 aa3.11□□□□□ -1.91
LSM1-202ENST00000520286 A0A096LNI7 61 aa3.1□□□□□ -1.91
LSM1-202ENST00000520286 HMCN2Q8NDA2 5059 aa3.1□□□□□ -1.91
LSM1-202ENST00000520286 NBDYA0A0U1RRE5 68 aa3.09□□□□□ -1.91
LSM1-202ENST00000520286 LCE1CQ5T751 118 aa3.09□□□□□ -1.91
LSM1-202ENST00000520286 LCE1BQ5T7P3 118 aa3.09□□□□□ -1.91
LSM1-202ENST00000520286 MYCBP2O75592 4640 aa3.08□□□□□ -1.92
LSM1-202ENST00000520286 FLG2Q5D862 2391 aaPredicted RBP3.08□□□□□ -1.92
LSM1-202ENST00000520286 SMR3BP02814 79 aaPredicted RBP3.08□□□□□ -1.92
LSM1-202ENST00000520286 KRTAP12-1P59990 96 aa3.08□□□□□ -1.92
LSM1-202ENST00000520286 KRTAP13-4Q3LI77 160 aa3.08□□□□□ -1.92
LSM1-202ENST00000520286 UBE2DNLQ8IWF7 75 aa3.08□□□□□ -1.92
LSM1-202ENST00000520286 DNAH6Q9C0G6 4158 aa3.08□□□□□ -1.92
LSM1-202ENST00000520286 FAT1Q14517 4588 aa3.07□□□□□ -1.92
LSM1-202ENST00000520286 RNF213Q63HN8 5207 aa3.04□□□□□ -1.92
LSM1-202ENST00000520286 Q6ZRN7 208 aaPredicted RBP3.04□□□□□ -1.92
LSM1-202ENST00000520286 H0YAA0 97 aa3.02□□□□□ -1.93
LSM1-202ENST00000520286 Q6ZSA8 131 aa2.99□□□□□ -1.93
LSM1-202ENST00000520286 KRTAP10-4P60372 401 aaPredicted RBP2.98□□□□□ -1.93
LSM1-202ENST00000520286 A0A087WTM6 91 aa2.97□□□□□ -1.93
LSM1-202ENST00000520286 VPS13BQ7Z7G8 4022 aa2.97□□□□□ -1.93
LSM1-202ENST00000520286 MT1HL1P0DM35 61 aa2.96□□□□□ -1.94
LSM1-202ENST00000520286 KRTAP4-3Q9BYR4 195 aa2.96□□□□□ -1.94
LSM1-202ENST00000520286 LRP1Q07954 4544 aaKnown RBP2.96□□□□□ -1.94
LSM1-202ENST00000520286 H1FX-AS1Q4G0G2 97 aa2.94□□□□□ -1.94
LSM1-202ENST00000520286 LRP2P98164 4655 aa2.93□□□□□ -1.94
LSM1-202ENST00000520286 OBSCNQ5VST9 7968 aa2.93□□□□□ -1.94
LSM1-202ENST00000520286 SPINK6Q6UWN8 80 aa2.92□□□□□ -1.94
LSM1-202ENST00000520286 SSBP3-AS1Q7Z2R9 100 aa2.92□□□□□ -1.94
LSM1-202ENST00000520286 KRTAP12-4P60329 112 aa2.91□□□□□ -1.94
LSM1-202ENST00000520286 FAT3Q8TDW7 4589 aa2.87□□□□□ -1.95
LSM1-202ENST00000520286 SPINK1P00995 79 aa2.86□□□□□ -1.95
LSM1-202ENST00000520286 CRCT1Q9UGL9 99 aa2.86□□□□□ -1.95
LSM1-202ENST00000520286 CRIPTQ9P021 101 aa2.85□□□□□ -1.95
LSM1-202ENST00000520286 KRTAP5-9P26371 169 aa2.84□□□□□ -1.95
LSM1-202ENST00000520286 COX6B2Q6YFQ2 88 aa2.84□□□□□ -1.95
LSM1-202ENST00000520286 FAT4Q6V0I7 4981 aa2.84□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms