RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 CHIC1Q5VXU3 224 aa29.6■■■□□ 2.33
LSM1-202ENST00000520286 AEBP2Q6ZN18 517 aaPredicted RBP29.43■■■□□ 2.3
LSM1-202ENST00000520286 PHF23Q9BUL5 403 aaPredicted RBP26.13■■□□□ 1.77
LSM1-202ENST00000520286 SENP3Q9H4L4 574 aaPredicted RBP24.82■■□□□ 1.56
LSM1-202ENST00000520286 PLPPR3Q6T4P5 718 aa24.44■■□□□ 1.5
LSM1-202ENST00000520286 FOXD1Q16676 465 aa22.93■■□□□ 1.26
LSM1-202ENST00000520286 ADRA2BP18089 450 aa22.87■■□□□ 1.25
LSM1-202ENST00000520286 PPP6R1Q9UPN7 881 aa22.78■■□□□ 1.24
LSM1-202ENST00000520286 KCNA4P22459 653 aa22.16■■□□□ 1.14
LSM1-202ENST00000520286 PIAS4Q8N2W9 510 aaPredicted RBP21.86■■□□□ 1.09
LSM1-202ENST00000520286 EHMT2Q96KQ7 1210 aa21.69■■□□□ 1.06
LSM1-202ENST00000520286 PPP4R3CPQ6ZMV5 832 aa21.65■■□□□ 1.06
LSM1-202ENST00000520286 NCBP3Q53F19 620 aaKnown RBP21.33■■□□□ 1.01
LSM1-202ENST00000520286 SLC4A1APQ9BWU0 796 aaKnown RBP21.27■■□□□ 1
LSM1-202ENST00000520286 NPM3O75607 178 aaKnown RBP21.02■□□□□ 0.96
LSM1-202ENST00000520286 CSRNP3Q8WYN3 585 aa21.01■□□□□ 0.95
LSM1-202ENST00000520286 SCAF1Q9H7N4 1312 aaKnown RBP20.85■□□□□ 0.93
LSM1-202ENST00000520286 CNKSR2Q8WXI2 1034 aa20.84■□□□□ 0.93
LSM1-202ENST00000520286 MSH5O43196 834 aa20.8■□□□□ 0.92
LSM1-202ENST00000520286 MAPK8IP2Q13387 824 aaPredicted RBP20.44■□□□□ 0.86
LSM1-202ENST00000520286 ZBTB22O15209 634 aa20.41■□□□□ 0.86
LSM1-202ENST00000520286 DNAJC5BQ9UF47 199 aa20.24■□□□□ 0.83
LSM1-202ENST00000520286 RNF216Q9NWF9 866 aaPredicted RBP20.21■□□□□ 0.83
LSM1-202ENST00000520286 FOXD4L1Q9NU39 408 aa20.13■□□□□ 0.81
LSM1-202ENST00000520286 DMRT2Q9Y5R5 561 aa19.96■□□□□ 0.79
LSM1-202ENST00000520286 HOXD11P31277 338 aaPredicted RBP19.89■□□□□ 0.77
LSM1-202ENST00000520286 SLC4A2P04920 1241 aa19.63■□□□□ 0.73
LSM1-202ENST00000520286 MYCNP04198 464 aaPredicted RBP19.4■□□□□ 0.7
LSM1-202ENST00000520286 ATXN8OSP0DMR3 200 aa19.34■□□□□ 0.69
LSM1-202ENST00000520286 DCAF8L1A6NGE4 600 aa19.08■□□□□ 0.64
LSM1-202ENST00000520286 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.98■□□□□ 0.638e-6■□□□□ 10.1
LSM1-202ENST00000520286 FKBP8Q14318 412 aa18.95■□□□□ 0.62
LSM1-202ENST00000520286 ATF5Q9Y2D1 282 aaPredicted RBP18.84■□□□□ 0.61
LSM1-202ENST00000520286 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.82■□□□□ 0.6
LSM1-202ENST00000520286 HNRNPUL2Q1KMD3 747 aaKnown RBP18.82■□□□□ 0.6
LSM1-202ENST00000520286 AMER1Q5JTC6 1135 aaPredicted RBP18.81■□□□□ 0.6
LSM1-202ENST00000520286 RTN4Q9NQC3 1192 aaKnown RBP18.81■□□□□ 0.6
LSM1-202ENST00000520286 SAMD1Q6SPF0 538 aaPredicted RBP18.8■□□□□ 0.6
LSM1-202ENST00000520286 U3KPZ7 1027 aaPredicted RBP18.76■□□□□ 0.59
LSM1-202ENST00000520286 SLC24A1O60721 1099 aa18.43■□□□□ 0.54
LSM1-202ENST00000520286 ZNF219Q9P2Y4 722 aaPredicted RBP18.43■□□□□ 0.54
LSM1-202ENST00000520286 APLP2Q06481 763 aa18.41■□□□□ 0.54
LSM1-202ENST00000520286 SPDYE4A6NLX3 237 aa18.08■□□□□ 0.48
LSM1-202ENST00000520286 MKRN4PQ13434 485 aaPredicted RBP18.05■□□□□ 0.48
LSM1-202ENST00000520286 FBXO3Q9UK99 471 aa18.02■□□□□ 0.48
LSM1-202ENST00000520286 TRHP20396 242 aaPredicted RBP18.01■□□□□ 0.47
LSM1-202ENST00000520286 FBLN2P98095 1184 aa17.98■□□□□ 0.47
LSM1-202ENST00000520286 SPINK5Q9NQ38 1064 aaPredicted RBP17.98■□□□□ 0.47
LSM1-202ENST00000520286 POLA2Q14181 598 aa17.91■□□□□ 0.46
LSM1-202ENST00000520286 RNF39Q9H2S5 420 aa17.91■□□□□ 0.46
LSM1-202ENST00000520286 PROM2Q8N271 834 aa17.89■□□□□ 0.45
LSM1-202ENST00000520286 CAPN15O75808 1086 aa17.87■□□□□ 0.45
LSM1-202ENST00000520286 VASPP50552 380 aaPredicted RBP17.75■□□□□ 0.43
LSM1-202ENST00000520286 C1QBPQ07021 282 aaKnown RBP17.74■□□□□ 0.43
LSM1-202ENST00000520286 ZBTB12Q9Y330 459 aaPredicted RBP17.67■□□□□ 0.42
LSM1-202ENST00000520286 ABCB7O75027 752 aa17.63■□□□□ 0.41
LSM1-202ENST00000520286 IFNLR1Q8IU57 520 aaPredicted RBP17.59■□□□□ 0.41
LSM1-202ENST00000520286 POTEDQ86YR6 584 aa17.4■□□□□ 0.38
LSM1-202ENST00000520286 DCAF8L2P0C7V8 631 aa17.36■□□□□ 0.37
LSM1-202ENST00000520286 PLCB2Q00722 1185 aa17.36■□□□□ 0.37
LSM1-202ENST00000520286 ZNF692Q9BU19 519 aaPredicted RBP17.36■□□□□ 0.37
LSM1-202ENST00000520286 DSG3P32926 999 aa17.35■□□□□ 0.37
LSM1-202ENST00000520286 PKD2Q13563 968 aa17.34■□□□□ 0.37
LSM1-202ENST00000520286 OSCARQ8IYS5 282 aa17.27■□□□□ 0.36
LSM1-202ENST00000520286 KLHL34Q8N239 644 aa17.27■□□□□ 0.36
LSM1-202ENST00000520286 SPDYE2BA6NHP3 402 aa17.26■□□□□ 0.35
LSM1-202ENST00000520286 SPDYE6P0CI01 402 aa17.26■□□□□ 0.35
LSM1-202ENST00000520286 SPDYE2Q495Y8 402 aa17.26■□□□□ 0.35
LSM1-202ENST00000520286 STAG3Q9UJ98 1225 aa17.25■□□□□ 0.35
LSM1-202ENST00000520286 SPOCK2Q92563 424 aa17.23■□□□□ 0.35
LSM1-202ENST00000520286 SSUH2Q9Y2M2 353 aa17.22■□□□□ 0.35
LSM1-202ENST00000520286 PABPN1Q86U42 306 aaKnown RBP eCLIP17.15■□□□□ 0.34
LSM1-202ENST00000520286 PLCD3Q8N3E9 789 aa17.14■□□□□ 0.33
LSM1-202ENST00000520286 HAP1P54257 671 aaPredicted RBP17.13■□□□□ 0.33
LSM1-202ENST00000520286 ECM2O94769 699 aaPredicted RBP17.08■□□□□ 0.32
LSM1-202ENST00000520286 MIER1Q8N108 512 aa17.06■□□□□ 0.32
LSM1-202ENST00000520286 BBXQ8WY36 941 aaPredicted RBP16.94■□□□□ 0.3
LSM1-202ENST00000520286 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.93■□□□□ 0.3
LSM1-202ENST00000520286 PLEKHG5O94827 1062 aa16.9■□□□□ 0.3
LSM1-202ENST00000520286 RGL2O15211 777 aa16.88■□□□□ 0.29
LSM1-202ENST00000520286 NPM1P06748 294 aaKnown RBP eCLIP16.88■□□□□ 0.29
LSM1-202ENST00000520286 VSIG10Q8N0Z9 540 aa16.87■□□□□ 0.29
LSM1-202ENST00000520286 ZBTB47Q9UFB7 747 aaPredicted RBP16.87■□□□□ 0.29
LSM1-202ENST00000520286 CIZ1Q9ULV3 898 aaPredicted RBP16.83■□□□□ 0.28
LSM1-202ENST00000520286 CACNB1Q02641 598 aaPredicted RBP16.82■□□□□ 0.28
LSM1-202ENST00000520286 PAXIP1Q6ZW49 1069 aaPredicted RBP16.8■□□□□ 0.28
LSM1-202ENST00000520286 CFAP44Q96MT7 982 aa16.77■□□□□ 0.28
LSM1-202ENST00000520286 BCANQ96GW7 911 aa16.75■□□□□ 0.27
LSM1-202ENST00000520286 TRIM41Q8WV44 630 aa16.67■□□□□ 0.26
LSM1-202ENST00000520286 CHGAP10645 457 aaKnown RBP16.66■□□□□ 0.26
LSM1-202ENST00000520286 SPRYD3Q8NCJ5 442 aa16.66■□□□□ 0.26
LSM1-202ENST00000520286 KDM2AQ9Y2K7 1162 aa16.65■□□□□ 0.26
LSM1-202ENST00000520286 GSE1Q14687 1217 aa16.58■□□□□ 0.24
LSM1-202ENST00000520286 SPDYE1Q8NFV5 336 aaPredicted RBP16.54■□□□□ 0.24
LSM1-202ENST00000520286 TSHZ2Q9NRE2 1034 aa16.53■□□□□ 0.24
LSM1-202ENST00000520286 NUBP1P53384 320 aa16.52■□□□□ 0.24
LSM1-202ENST00000520286 HS6ST3Q8IZP7 471 aa16.5■□□□□ 0.23
LSM1-202ENST00000520286 RBM42Q9BTD8 480 aaKnown RBP16.5■□□□□ 0.23
LSM1-202ENST00000520286 AKT1S1Q96B36 256 aa16.49■□□□□ 0.23
LSM1-202ENST00000520286 DCAF8Q5TAQ9 597 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms