RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 KRTAP13-4Q3LI77 160 aa7.07□□□□□ -1.28
HDAC6-220ENST00000477528 NDUFAF8A1L188 74 aa7.07□□□□□ -1.28
HDAC6-220ENST00000477528 CMYA5Q8N3K9 4069 aa7.06□□□□□ -1.28
HDAC6-220ENST00000477528 KRTAP12-1P59990 96 aa7.06□□□□□ -1.28
HDAC6-220ENST00000477528 KRTAP3-3Q9BYR6 98 aa7.04□□□□□ -1.28
HDAC6-220ENST00000477528 DNHD1Q96M86 4753 aa7.03□□□□□ -1.28
HDAC6-220ENST00000477528 DNAH2Q9P225 4427 aa7.03□□□□□ -1.28
HDAC6-220ENST00000477528 PRKDCP78527 4128 aaKnown RBP7.02□□□□□ -1.29
HDAC6-220ENST00000477528 DNAH8Q96JB1 4490 aa7□□□□□ -1.29
HDAC6-220ENST00000477528 KRTAP3-2Q9BYR7 98 aa6.99□□□□□ -1.29
HDAC6-220ENST00000477528 DYNC2H1Q8NCM8 4307 aaKnown RBP6.97□□□□□ -1.29
HDAC6-220ENST00000477528 DYNC1H1Q14204 4646 aaKnown RBP6.92□□□□□ -1.3
HDAC6-220ENST00000477528 LRP1BQ9NZR2 4599 aa6.92□□□□□ -1.3
HDAC6-220ENST00000477528 KRTAP10-10P60014 251 aa6.91□□□□□ -1.3
HDAC6-220ENST00000477528 KMT2AQ03164 3969 aa6.9□□□□□ -1.31
HDAC6-220ENST00000477528 KRTAP4-5Q9BYR2 181 aa6.87□□□□□ -1.31
HDAC6-220ENST00000477528 FAT1Q14517 4588 aa6.82□□□□□ -1.32
HDAC6-220ENST00000477528 SACSQ9NZJ4 4579 aa6.81□□□□□ -1.32
HDAC6-220ENST00000477528 LYSTQ99698 3801 aa6.77□□□□□ -1.32
HDAC6-220ENST00000477528 DNAH6Q9C0G6 4158 aa6.76□□□□□ -1.33
HDAC6-220ENST00000477528 FAT2Q9NYQ8 4349 aa6.76□□□□□ -1.33
HDAC6-220ENST00000477528 HECTD4Q9Y4D8 3996 aa6.74□□□□□ -1.33
HDAC6-220ENST00000477528 DNAH7Q8WXX0 4024 aa6.71□□□□□ -1.33
HDAC6-220ENST00000477528 VPS13BQ7Z7G8 4022 aa6.71□□□□□ -1.34
HDAC6-220ENST00000477528 FRAS1Q86XX4 4008 aa6.66□□□□□ -1.34
HDAC6-220ENST00000477528 PRO2289Q9P1D8 64 aa6.66□□□□□ -1.34
HDAC6-220ENST00000477528 RYR1P21817 5038 aa6.51□□□□□ -1.37
HDAC6-220ENST00000477528 LORP23490 312 aaPredicted RBP6.51□□□□□ -1.37
HDAC6-220ENST00000477528 APOBP04114 4563 aaKnown RBP6.5□□□□□ -1.37
HDAC6-220ENST00000477528 HYDINQ4G0P3 5121 aa6.49□□□□□ -1.37
HDAC6-220ENST00000477528 KRTAP15-1Q3LI76 137 aa6.46□□□□□ -1.38
HDAC6-220ENST00000477528 KRTAP4-1Q9BYQ7 146 aa6.46□□□□□ -1.38
HDAC6-220ENST00000477528 RYR2Q92736 4967 aa6.43□□□□□ -1.38
HDAC6-220ENST00000477528 KIAA1109Q2LD37 5005 aa6.42□□□□□ -1.38
HDAC6-220ENST00000477528 KRTAP17-1Q9BYP8 105 aa6.39□□□□□ -1.39
HDAC6-220ENST00000477528 RYR3Q15413 4870 aa6.38□□□□□ -1.39
HDAC6-220ENST00000477528 LRP1Q07954 4544 aaKnown RBP6.37□□□□□ -1.39
HDAC6-220ENST00000477528 MYCBP2O75592 4640 aa6.37□□□□□ -1.39
HDAC6-220ENST00000477528 FAT3Q8TDW7 4589 aa6.36□□□□□ -1.39
HDAC6-220ENST00000477528 PKD1P98161 4303 aa6.34□□□□□ -1.39
HDAC6-220ENST00000477528 PKHD1P08F94 4074 aa6.32□□□□□ -1.4
HDAC6-220ENST00000477528 KRTAP23-1A1A580 65 aa6.29□□□□□ -1.4
HDAC6-220ENST00000477528 HSPG2P98160 4391 aa6.2□□□□□ -1.42
HDAC6-220ENST00000477528 KRTAP10-12P60413 245 aa6.18□□□□□ -1.42
HDAC6-220ENST00000477528 PKHD1L1Q86WI1 4243 aa6.12□□□□□ -1.43
HDAC6-220ENST00000477528 MT1HP80294 61 aa6.12□□□□□ -1.43
HDAC6-220ENST00000477528 LCE3AQ5TA76 89 aa6.11□□□□□ -1.43
HDAC6-220ENST00000477528 SPRR2GQ9BYE4 73 aa6.09□□□□□ -1.43
HDAC6-220ENST00000477528 KMT2CQ8NEZ4 4911 aaKnown RBP6.05□□□□□ -1.44
HDAC6-220ENST00000477528 KRTAP12-3P60328 96 aa6.05□□□□□ -1.44
HDAC6-220ENST00000477528 MT2AP02795 61 aa6.04□□□□□ -1.44
HDAC6-220ENST00000477528 LRP2P98164 4655 aa6.04□□□□□ -1.44
HDAC6-220ENST00000477528 TNXBP22105 4242 aa6.01□□□□□ -1.45
HDAC6-220ENST00000477528 HERC2O95714 4834 aa6□□□□□ -1.45
HDAC6-220ENST00000477528 MT1FP04733 61 aa5.95□□□□□ -1.46
HDAC6-220ENST00000477528 BIRC6Q9NR09 4857 aa5.88□□□□□ -1.47
HDAC6-220ENST00000477528 LPAP08519 4548 aa5.85□□□□□ -1.47
HDAC6-220ENST00000477528 KRTAP19-1Q8IUB9 90 aa5.83□□□□□ -1.48
HDAC6-220ENST00000477528 INE1O15225 51 aa5.78□□□□□ -1.48
HDAC6-220ENST00000477528 EPPK1P58107 5090 aaKnown RBP5.76□□□□□ -1.49
HDAC6-220ENST00000477528 LCE2CQ5TA81 110 aa5.76□□□□□ -1.49
HDAC6-220ENST00000477528 KRTAP19-2Q3LHN2 52 aa5.75□□□□□ -1.49
HDAC6-220ENST00000477528 KRTAP19-8Q3LI54 63 aa5.75□□□□□ -1.49
HDAC6-220ENST00000477528 HERC1Q15751 4861 aa5.74□□□□□ -1.49
HDAC6-220ENST00000477528 KRTAP8-1Q8IUC2 63 aa5.71□□□□□ -1.5
HDAC6-220ENST00000477528 ABCA13Q86UQ4 5058 aa5.69□□□□□ -1.5
HDAC6-220ENST00000477528 KRTAP9-8Q9BYQ0 159 aa5.66□□□□□ -1.5
HDAC6-220ENST00000477528 MUC17Q685J3 4493 aa5.61□□□□□ -1.51
HDAC6-220ENST00000477528 MT1BP07438 61 aa5.58□□□□□ -1.52
HDAC6-220ENST00000477528 MT1XP80297 61 aa5.58□□□□□ -1.52
HDAC6-220ENST00000477528 FLGP20930 4061 aaPredicted RBP5.57□□□□□ -1.52
HDAC6-220ENST00000477528 PCLOQ9Y6V0 5065 aa5.55□□□□□ -1.52
HDAC6-220ENST00000477528 KRTAP19-5Q3LI72 72 aa5.55□□□□□ -1.52
HDAC6-220ENST00000477528 KRTAP10-5P60370 271 aa5.54□□□□□ -1.52
HDAC6-220ENST00000477528 KRTAP10-7P60409 375 aaPredicted RBP5.53□□□□□ -1.52
HDAC6-220ENST00000477528 CRCT1Q9UGL9 99 aa5.51□□□□□ -1.53
HDAC6-220ENST00000477528 KRTAP9-3Q9BYQ3 159 aa5.48□□□□□ -1.53
HDAC6-220ENST00000477528 LCE3CQ5T5A8 94 aa5.45□□□□□ -1.54
HDAC6-220ENST00000477528 SPRR5A0A1B0GTR4 108 aa5.43□□□□□ -1.54
HDAC6-220ENST00000477528 KRTAP19-4Q3LI73 84 aa5.38□□□□□ -1.55
HDAC6-220ENST00000477528 RNF213Q63HN8 5207 aa5.29□□□□□ -1.56
HDAC6-220ENST00000477528 HMCN2Q8NDA2 5059 aa5.28□□□□□ -1.56
HDAC6-220ENST00000477528 FAT4Q6V0I7 4981 aa5.25□□□□□ -1.57
HDAC6-220ENST00000477528 LCE2BO14633 110 aa5.23□□□□□ -1.57
HDAC6-220ENST00000477528 KRTAP4-8A0A0G2JLE6 195 aa5.21□□□□□ -1.58
HDAC6-220ENST00000477528 KRTAP4-8Q9BYQ9 185 aa5.21□□□□□ -1.58
HDAC6-220ENST00000477528 SPRR2FQ96RM1 72 aa5.17□□□□□ -1.58
HDAC6-220ENST00000477528 MUC2Q02817 5179 aa5.14□□□□□ -1.59
HDAC6-220ENST00000477528 UBR4Q5T4S7 5183 aa5.04□□□□□ -1.6
HDAC6-220ENST00000477528 LCE2AQ5TA79 106 aaPredicted RBP5.02□□□□□ -1.61
HDAC6-220ENST00000477528 MT1GP13640 62 aa4.96□□□□□ -1.62
HDAC6-220ENST00000477528 MT1LQ93083 61 aa4.95□□□□□ -1.62
HDAC6-220ENST00000477528 MT1EP04732 61 aa4.94□□□□□ -1.62
HDAC6-220ENST00000477528 KRTAP4-7Q9BYR0 210 aa4.9□□□□□ -1.62
HDAC6-220ENST00000477528 KRTAP19-6Q3LI70 58 aa4.89□□□□□ -1.63
HDAC6-220ENST00000477528 KRTAP19-3Q7Z4W3 81 aa4.85□□□□□ -1.63
HDAC6-220ENST00000477528 KRTAP19-7Q3SYF9 63 aa4.81□□□□□ -1.64
HDAC6-220ENST00000477528 SPRR2EP22531 72 aa4.78□□□□□ -1.64
HDAC6-220ENST00000477528 SPRR2BP35325 72 aa4.78□□□□□ -1.64
HDAC6-220ENST00000477528 SPRR2AP35326 72 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms