RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 RPL37P61927 97 aaKnown RBP2.88□□□□□ -1.95
SYNE1-220ENST00000471834 DNAH5Q8TE73 4624 aa2.88□□□□□ -1.95
SYNE1-220ENST00000471834 RYR3Q15413 4870 aa2.87□□□□□ -1.95
SYNE1-220ENST00000471834 CMYA5Q8N3K9 4069 aa2.87□□□□□ -1.95
SYNE1-220ENST00000471834 NDUFAF8A1L188 74 aa2.87□□□□□ -1.95
SYNE1-220ENST00000471834 KRTAP10-6P60371 365 aaPredicted RBP2.87□□□□□ -1.95
SYNE1-220ENST00000471834 PRO2289Q9P1D8 64 aa2.87□□□□□ -1.95
SYNE1-220ENST00000471834 ALMS1Q8TCU4 4167 aa2.85□□□□□ -1.95
SYNE1-220ENST00000471834 KRTAP10-10P60014 251 aa2.85□□□□□ -1.95
SYNE1-220ENST00000471834 TRRAPQ9Y4A5 3859 aa2.83□□□□□ -1.96
SYNE1-220ENST00000471834 P0C880 135 aa2.81□□□□□ -1.96
SYNE1-220ENST00000471834 XP32Q5T750 250 aa2.8□□□□□ -1.96
SYNE1-220ENST00000471834 FRAS1Q86XX4 4008 aa2.8□□□□□ -1.96
SYNE1-220ENST00000471834 HERC1Q15751 4861 aa2.79□□□□□ -1.96
SYNE1-220ENST00000471834 HYDINQ4G0P3 5121 aa2.78□□□□□ -1.96
SYNE1-220ENST00000471834 FAT3Q8TDW7 4589 aa2.77□□□□□ -1.97
SYNE1-220ENST00000471834 A0A1B0GVY2 172 aa2.77□□□□□ -1.97
SYNE1-220ENST00000471834 APOBP04114 4563 aaKnown RBP2.77□□□□□ -1.97
SYNE1-220ENST00000471834 C10orf95Q9H7T3 257 aa2.77□□□□□ -1.97
SYNE1-220ENST00000471834 KRTAP10-8P60410 259 aa2.77□□□□□ -1.97
SYNE1-220ENST00000471834 ABCA13Q86UQ4 5058 aa2.76□□□□□ -1.97
SYNE1-220ENST00000471834 MYCBP2O75592 4640 aa2.76□□□□□ -1.97
SYNE1-220ENST00000471834 LRP1Q07954 4544 aaKnown RBP2.76□□□□□ -1.97
SYNE1-220ENST00000471834 KRTAP15-1Q3LI76 137 aa2.75□□□□□ -1.97
SYNE1-220ENST00000471834 LORP23490 312 aaPredicted RBP2.75□□□□□ -1.97
SYNE1-220ENST00000471834 CSMD3Q7Z407 3707 aa2.74□□□□□ -1.97
SYNE1-220ENST00000471834 BIRC6Q9NR09 4857 aa2.73□□□□□ -1.97
SYNE1-220ENST00000471834 DNAH6Q9C0G6 4158 aa2.72□□□□□ -1.97
SYNE1-220ENST00000471834 KRTAP13-4Q3LI77 160 aa2.72□□□□□ -1.97
SYNE1-220ENST00000471834 TPRXLQ17RH7 258 aa2.72□□□□□ -1.97
SYNE1-220ENST00000471834 FAT1Q14517 4588 aa2.72□□□□□ -1.97
SYNE1-220ENST00000471834 LYSTQ99698 3801 aa2.71□□□□□ -1.98
SYNE1-220ENST00000471834 DNAH7Q8WXX0 4024 aa2.71□□□□□ -1.98
SYNE1-220ENST00000471834 PRKDCP78527 4128 aaKnown RBP2.69□□□□□ -1.98
SYNE1-220ENST00000471834 TNP1P09430 55 aa2.69□□□□□ -1.98
SYNE1-220ENST00000471834 HECTD4Q9Y4D8 3996 aa2.69□□□□□ -1.98
SYNE1-220ENST00000471834 HSPG2P98160 4391 aa2.68□□□□□ -1.98
SYNE1-220ENST00000471834 SPRR5A0A1B0GTR4 108 aa2.68□□□□□ -1.98
SYNE1-220ENST00000471834 PKHD1L1Q86WI1 4243 aa2.67□□□□□ -1.98
SYNE1-220ENST00000471834 FAT2Q9NYQ8 4349 aa2.67□□□□□ -1.98
SYNE1-220ENST00000471834 HMCN2Q8NDA2 5059 aa2.66□□□□□ -1.98
SYNE1-220ENST00000471834 PKD1P98161 4303 aa2.66□□□□□ -1.98
SYNE1-220ENST00000471834 EPPK1P58107 5090 aaKnown RBP2.65□□□□□ -1.99
SYNE1-220ENST00000471834 KRTAP23-1A1A580 65 aa2.65□□□□□ -1.99
SYNE1-220ENST00000471834 HERC2O95714 4834 aa2.65□□□□□ -1.99
SYNE1-220ENST00000471834 KRTAP12-1P59990 96 aa2.64□□□□□ -1.99
SYNE1-220ENST00000471834 KMT2CQ8NEZ4 4911 aaKnown RBP2.64□□□□□ -1.99
SYNE1-220ENST00000471834 KRTAP19-2Q3LHN2 52 aa2.63□□□□□ -1.99
SYNE1-220ENST00000471834 PP632Q6XCG6 107 aa2.63□□□□□ -1.99
SYNE1-220ENST00000471834 PCLOQ9Y6V0 5065 aa2.62□□□□□ -1.99
SYNE1-220ENST00000471834 MUC17Q685J3 4493 aa2.6□□□□□ -1.99
SYNE1-220ENST00000471834 PKHD1P08F94 4074 aa2.59□□□□□ -1.99
SYNE1-220ENST00000471834 RNF213Q63HN8 5207 aa2.58□□□□□ -2
SYNE1-220ENST00000471834 UBR4Q5T4S7 5183 aa2.56□□□□□ -2
SYNE1-220ENST00000471834 KRTAP12-2P59991 146 aa2.56□□□□□ -2
SYNE1-220ENST00000471834 MT1HL1P0DM35 61 aa2.55□□□□□ -2
SYNE1-220ENST00000471834 KMT2AQ03164 3969 aa2.52□□□□□ -2.01
SYNE1-220ENST00000471834 LRP2P98164 4655 aa2.5□□□□□ -2.01
SYNE1-220ENST00000471834 TNXBP22105 4242 aa2.48□□□□□ -2.01
SYNE1-220ENST00000471834 INE1O15225 51 aa2.43□□□□□ -2.02
SYNE1-220ENST00000471834 KRTAP17-1Q9BYP8 105 aa2.43□□□□□ -2.02
SYNE1-220ENST00000471834 VPS13BQ7Z7G8 4022 aa2.42□□□□□ -2.02
SYNE1-220ENST00000471834 KRTAP8-1Q8IUC2 63 aa2.4□□□□□ -2.03
SYNE1-220ENST00000471834 CRCT1Q9UGL9 99 aa2.39□□□□□ -2.03
SYNE1-220ENST00000471834 FAT4Q6V0I7 4981 aa2.37□□□□□ -2.03
SYNE1-220ENST00000471834 LCE4AQ5TA78 99 aa2.34□□□□□ -2.04
SYNE1-220ENST00000471834 SPRR2GQ9BYE4 73 aa2.33□□□□□ -2.04
SYNE1-220ENST00000471834 KRTAP19-1Q8IUB9 90 aa2.3□□□□□ -2.04
SYNE1-220ENST00000471834 KRTAP19-8Q3LI54 63 aa2.3□□□□□ -2.04
SYNE1-220ENST00000471834 KRTAP4-1Q9BYQ7 146 aa2.3□□□□□ -2.04
SYNE1-220ENST00000471834 USH2AO75445 5202 aa2.28□□□□□ -2.04
SYNE1-220ENST00000471834 KRTAP19-4Q3LI73 84 aa2.27□□□□□ -2.05
SYNE1-220ENST00000471834 KRTAP10-7P60409 375 aaPredicted RBP2.26□□□□□ -2.05
SYNE1-220ENST00000471834 LPAP08519 4548 aa2.26□□□□□ -2.05
SYNE1-220ENST00000471834 MUC2Q02817 5179 aa2.25□□□□□ -2.05
SYNE1-220ENST00000471834 KRTAP4-5Q9BYR2 181 aa2.25□□□□□ -2.05
SYNE1-220ENST00000471834 KRTAP10-12P60413 245 aa2.23□□□□□ -2.05
SYNE1-220ENST00000471834 LCE3AQ5TA76 89 aa2.22□□□□□ -2.05
SYNE1-220ENST00000471834 SPRR2FQ96RM1 72 aa2.2□□□□□ -2.06
SYNE1-220ENST00000471834 SPRR2EP22531 72 aa2.18□□□□□ -2.06
SYNE1-220ENST00000471834 SPRR2BP35325 72 aa2.18□□□□□ -2.06
SYNE1-220ENST00000471834 SPRR2AP35326 72 aa2.18□□□□□ -2.06
SYNE1-220ENST00000471834 FLGP20930 4061 aaPredicted RBP2.18□□□□□ -2.06
SYNE1-220ENST00000471834 KRTAP10-5P60370 271 aa2.18□□□□□ -2.06
SYNE1-220ENST00000471834 SSPOA2VEC9 5147 aa2.16□□□□□ -2.06
SYNE1-220ENST00000471834 SPRR2DP22532 72 aa2.14□□□□□ -2.07
SYNE1-220ENST00000471834 MT1BP07438 61 aa2.14□□□□□ -2.07
SYNE1-220ENST00000471834 KRTAP9-6A0A140TA67 174 aa2.13□□□□□ -2.07
SYNE1-220ENST00000471834 KRTAP9-7A8MTY7 169 aa2.13□□□□□ -2.07
SYNE1-220ENST00000471834 KRTAP12-3P60328 96 aa2.13□□□□□ -2.07
SYNE1-220ENST00000471834 KRTAP2-3P0C7H8 128 aa2.11□□□□□ -2.07
SYNE1-220ENST00000471834 KRTAP2-4Q9BYR9 128 aa2.11□□□□□ -2.07
SYNE1-220ENST00000471834 KRTAP2-1Q9BYU5 128 aa2.11□□□□□ -2.07
SYNE1-220ENST00000471834 KRTAP9-8Q9BYQ0 159 aa2.11□□□□□ -2.07
SYNE1-220ENST00000471834 MT1XP80297 61 aa2.1□□□□□ -2.07
SYNE1-220ENST00000471834 MT2AP02795 61 aa2.09□□□□□ -2.07
SYNE1-220ENST00000471834 KRTAP9-4Q9BYQ2 154 aa2.06□□□□□ -2.08
SYNE1-220ENST00000471834 MT1FP04733 61 aa2.05□□□□□ -2.08
SYNE1-220ENST00000471834 KRTAP9-3Q9BYQ3 159 aa2.04□□□□□ -2.08
SYNE1-220ENST00000471834 KRTAP19-5Q3LI72 72 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms