RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 KIAA1109Q2LD37 5005 aa6.36□□□□□ -1.39
SMPD4-213ENST00000454468 A0A1B0GU33 70 aa6.36□□□□□ -1.39
SMPD4-213ENST00000454468 COX6B2Q6YFQ2 88 aa6.33□□□□□ -1.4
SMPD4-213ENST00000454468 NDUFAF8A1L188 74 aa6.32□□□□□ -1.4
SMPD4-213ENST00000454468 RYR2Q92736 4967 aa6.3□□□□□ -1.4
SMPD4-213ENST00000454468 KRTAP3-1Q9BYR8 98 aa6.3□□□□□ -1.4
SMPD4-213ENST00000454468 J3QL48 77 aa6.3□□□□□ -1.4
SMPD4-213ENST00000454468 FAT3Q8TDW7 4589 aa6.29□□□□□ -1.4
SMPD4-213ENST00000454468 XP32Q5T750 250 aa6.28□□□□□ -1.4
SMPD4-213ENST00000454468 KRTAP10-8P60410 259 aa6.28□□□□□ -1.4
SMPD4-213ENST00000454468 RYR3Q15413 4870 aa6.26□□□□□ -1.41
SMPD4-213ENST00000454468 RPL37P61927 97 aaKnown RBP6.25□□□□□ -1.41
SMPD4-213ENST00000454468 P0C880 135 aa6.24□□□□□ -1.41
SMPD4-213ENST00000454468 RYR1P21817 5038 aa6.24□□□□□ -1.41
SMPD4-213ENST00000454468 S4R3F8 94 aa6.23□□□□□ -1.41
SMPD4-213ENST00000454468 H1FX-AS1Q4G0G2 97 aa6.22□□□□□ -1.41
SMPD4-213ENST00000454468 KRTAP17-1Q9BYP8 105 aa6.2□□□□□ -1.42
SMPD4-213ENST00000454468 H0YAA0 97 aa6.19□□□□□ -1.42
SMPD4-213ENST00000454468 KRTAP4-5Q9BYR2 181 aa6.16□□□□□ -1.42
SMPD4-213ENST00000454468 MT1HL1P0DM35 61 aa6.12□□□□□ -1.43
SMPD4-213ENST00000454468 HSPG2P98160 4391 aa6.09□□□□□ -1.43
SMPD4-213ENST00000454468 PKHD1L1Q86WI1 4243 aa6.06□□□□□ -1.44
SMPD4-213ENST00000454468 EPPK1P58107 5090 aaKnown RBP6.06□□□□□ -1.44
SMPD4-213ENST00000454468 LUZP6Q538Z0 58 aa6.06□□□□□ -1.44
SMPD4-213ENST00000454468 C10orf95Q9H7T3 257 aa6.05□□□□□ -1.44
SMPD4-213ENST00000454468 LRP2P98164 4655 aa6.04□□□□□ -1.44
SMPD4-213ENST00000454468 KRTAP3-3Q9BYR6 98 aa5.98□□□□□ -1.45
SMPD4-213ENST00000454468 KRTAP13-4Q3LI77 160 aa5.98□□□□□ -1.45
SMPD4-213ENST00000454468 SEC61BP60468 96 aaKnown RBP5.97□□□□□ -1.45
SMPD4-213ENST00000454468 TPRXLQ17RH7 258 aa5.97□□□□□ -1.45
SMPD4-213ENST00000454468 LPAP08519 4548 aa5.96□□□□□ -1.45
SMPD4-213ENST00000454468 M0QZ58 72 aa5.95□□□□□ -1.46
SMPD4-213ENST00000454468 KRTAP10-6P60371 365 aaPredicted RBP5.94□□□□□ -1.46
SMPD4-213ENST00000454468 R4GN34 69 aa5.94□□□□□ -1.46
SMPD4-213ENST00000454468 TNXBP22105 4242 aa5.93□□□□□ -1.46
SMPD4-213ENST00000454468 ABCA13Q86UQ4 5058 aa5.91□□□□□ -1.46
SMPD4-213ENST00000454468 KRTAP3-2Q9BYR7 98 aa5.87□□□□□ -1.47
SMPD4-213ENST00000454468 HERC2O95714 4834 aa5.83□□□□□ -1.48
SMPD4-213ENST00000454468 KRTAP12-2P59991 146 aa5.82□□□□□ -1.48
SMPD4-213ENST00000454468 KRTAP15-1Q3LI76 137 aa5.8□□□□□ -1.48
SMPD4-213ENST00000454468 M0R2T5 61 aa5.77□□□□□ -1.49
SMPD4-213ENST00000454468 MUC2Q02817 5179 aa5.76□□□□□ -1.49
SMPD4-213ENST00000454468 CAMK2N1Q7Z7J9 78 aa5.76□□□□□ -1.49
SMPD4-213ENST00000454468 KRTAP4-1Q9BYQ7 146 aa5.73□□□□□ -1.49
SMPD4-213ENST00000454468 KRTAP12-1P59990 96 aa5.71□□□□□ -1.49
SMPD4-213ENST00000454468 LORP23490 312 aaPredicted RBP5.67□□□□□ -1.5
SMPD4-213ENST00000454468 HERC1Q15751 4861 aa5.61□□□□□ -1.51
SMPD4-213ENST00000454468 PLAC4Q8WY50 150 aa5.54□□□□□ -1.52
SMPD4-213ENST00000454468 RNF213Q63HN8 5207 aa5.53□□□□□ -1.52
SMPD4-213ENST00000454468 FAT4Q6V0I7 4981 aa5.49□□□□□ -1.53
SMPD4-213ENST00000454468 BIRC6Q9NR09 4857 aa5.49□□□□□ -1.53
SMPD4-213ENST00000454468 PCLOQ9Y6V0 5065 aa5.47□□□□□ -1.53
SMPD4-213ENST00000454468 KRTAP10-10P60014 251 aa5.4□□□□□ -1.55
SMPD4-213ENST00000454468 UBR4Q5T4S7 5183 aa5.38□□□□□ -1.55
SMPD4-213ENST00000454468 MUC17Q685J3 4493 aa5.35□□□□□ -1.55
SMPD4-213ENST00000454468 TNP1P09430 55 aa5.3□□□□□ -1.56
SMPD4-213ENST00000454468 KRTAP19-2Q3LHN2 52 aa5.28□□□□□ -1.56
SMPD4-213ENST00000454468 HMCN2Q8NDA2 5059 aa5.26□□□□□ -1.57
SMPD4-213ENST00000454468 FLGP20930 4061 aaPredicted RBP5.2□□□□□ -1.58
SMPD4-213ENST00000454468 MT1HP80294 61 aa5.16□□□□□ -1.58
SMPD4-213ENST00000454468 LCE2CQ5TA81 110 aa5.15□□□□□ -1.59
SMPD4-213ENST00000454468 PP632Q6XCG6 107 aa5.12□□□□□ -1.59
SMPD4-213ENST00000454468 MT1FP04733 61 aa5.1□□□□□ -1.59
SMPD4-213ENST00000454468 MT2AP02795 61 aa5.08□□□□□ -1.6
SMPD4-213ENST00000454468 KRTAP19-1Q8IUB9 90 aa5.05□□□□□ -1.6
SMPD4-213ENST00000454468 PRO2289Q9P1D8 64 aa5□□□□□ -1.61
SMPD4-213ENST00000454468 SPRR2GQ9BYE4 73 aa4.99□□□□□ -1.61
SMPD4-213ENST00000454468 LCE3AQ5TA76 89 aa4.96□□□□□ -1.62
SMPD4-213ENST00000454468 KRTAP9-8Q9BYQ0 159 aa4.94□□□□□ -1.62
SMPD4-213ENST00000454468 FSIP2Q5CZC0 6907 aa4.93□□□□□ -1.62
SMPD4-213ENST00000454468 USH2AO75445 5202 aa4.91□□□□□ -1.62
SMPD4-213ENST00000454468 KRTAP10-12P60413 245 aa4.81□□□□□ -1.64
SMPD4-213ENST00000454468 MT1BP07438 61 aa4.8□□□□□ -1.64
SMPD4-213ENST00000454468 INE1O15225 51 aa4.76□□□□□ -1.65
SMPD4-213ENST00000454468 MT1XP80297 61 aa4.75□□□□□ -1.65
SMPD4-213ENST00000454468 KRTAP10-7P60409 375 aaPredicted RBP4.75□□□□□ -1.65
SMPD4-213ENST00000454468 KRTAP10-5P60370 271 aa4.74□□□□□ -1.65
SMPD4-213ENST00000454468 KRTAP12-3P60328 96 aa4.74□□□□□ -1.65
SMPD4-213ENST00000454468 KMT2DO14686 5537 aa4.73□□□□□ -1.65
SMPD4-213ENST00000454468 KRTAP19-8Q3LI54 63 aa4.73□□□□□ -1.65
SMPD4-213ENST00000454468 KRTAP9-3Q9BYQ3 159 aa4.72□□□□□ -1.65
SMPD4-213ENST00000454468 KRTAP23-1A1A580 65 aa4.68□□□□□ -1.66
SMPD4-213ENST00000454468 LCE2BO14633 110 aa4.65□□□□□ -1.66
SMPD4-213ENST00000454468 KRTAP4-8A0A0G2JLE6 195 aa4.6□□□□□ -1.67
SMPD4-213ENST00000454468 KRTAP4-8Q9BYQ9 185 aa4.6□□□□□ -1.67
SMPD4-213ENST00000454468 KRTAP8-1Q8IUC2 63 aa4.59□□□□□ -1.67
SMPD4-213ENST00000454468 SPRR5A0A1B0GTR4 108 aa4.58□□□□□ -1.68
SMPD4-213ENST00000454468 KRTAP19-5Q3LI72 72 aa4.56□□□□□ -1.68
SMPD4-213ENST00000454468 LCE2AQ5TA79 106 aaPredicted RBP4.47□□□□□ -1.69
SMPD4-213ENST00000454468 KRTAP4-7Q9BYR0 210 aa4.38□□□□□ -1.71
SMPD4-213ENST00000454468 CRCT1Q9UGL9 99 aa4.38□□□□□ -1.71
SMPD4-213ENST00000454468 DSTQ03001 7570 aaKnown RBP4.35□□□□□ -1.71
SMPD4-213ENST00000454468 LCE3CQ5T5A8 94 aa4.34□□□□□ -1.71
SMPD4-213ENST00000454468 SSPOA2VEC9 5147 aa4.33□□□□□ -1.72
SMPD4-213ENST00000454468 MUC12Q9UKN1 5478 aa4.25□□□□□ -1.73
SMPD4-213ENST00000454468 FCGBPQ9Y6R7 5405 aaPredicted RBP4.23□□□□□ -1.73
SMPD4-213ENST00000454468 KRTAP19-7Q3SYF9 63 aa4.2□□□□□ -1.74
SMPD4-213ENST00000454468 SYNE1Q8NF91 8797 aaKnown RBP4.16□□□□□ -1.74
SMPD4-213ENST00000454468 OBSCNQ5VST9 7968 aa4.15□□□□□ -1.75
SMPD4-213ENST00000454468 KRTAP4-3Q9BYR4 195 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms