RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 NISCHQ9Y2I1 1504 aa23.95■■□□□ 1.42
SMPD4-213ENST00000454468 DCAF8L2P0C7V8 631 aa21.56■■□□□ 1.04
SMPD4-213ENST00000454468 SHROOM4Q9ULL8 1493 aa21.48■■□□□ 1.03
SMPD4-213ENST00000454468 SUPT5HO00267 1087 aaKnown RBP21.15■□□□□ 0.98
SMPD4-213ENST00000454468 ZCCHC6Q5VYS8 1495 aaKnown RBP20.08■□□□□ 0.8
SMPD4-213ENST00000454468 EHMT2Q96KQ7 1210 aa19.95■□□□□ 0.78
SMPD4-213ENST00000454468 CCDC180Q9P1Z9 1646 aa19.93■□□□□ 0.78
SMPD4-213ENST00000454468 CHIC1Q5VXU3 224 aa19.87■□□□□ 0.77
SMPD4-213ENST00000454468 FAM9AQ8IZU1 332 aaPredicted RBP19.73■□□□□ 0.75
SMPD4-213ENST00000454468 ABCC9O60706 1549 aa19.72■□□□□ 0.75
SMPD4-213ENST00000454468 LOC105371045A0A1W2PR82 267 aa19.67■□□□□ 0.74
SMPD4-213ENST00000454468 PCGF6Q9BYE7 350 aa19.62■□□□□ 0.73
SMPD4-213ENST00000454468 TRIM41Q8WV44 630 aa19.46■□□□□ 0.71
SMPD4-213ENST00000454468 MYO15BQ96JP2 1530 aa19.45■□□□□ 0.7
SMPD4-213ENST00000454468 SCRIBQ14160 1630 aa19.44■□□□□ 0.7
SMPD4-213ENST00000454468 PPARGC1BQ86YN6 1023 aaKnown RBP19.21■□□□□ 0.67
SMPD4-213ENST00000454468 PABPN1Q86U42 306 aaKnown RBP eCLIP19.21■□□□□ 0.672e-6■■□□□ 12.8
SMPD4-213ENST00000454468 TTBK1Q5TCY1 1321 aaPredicted RBP19.19■□□□□ 0.66
SMPD4-213ENST00000454468 DCAF1Q9Y4B6 1507 aa19.17■□□□□ 0.66
SMPD4-213ENST00000454468 RSF1Q96T23 1441 aaPredicted RBP19.1■□□□□ 0.65
SMPD4-213ENST00000454468 HRCP23327 699 aa19.03■□□□□ 0.64
SMPD4-213ENST00000454468 CECR2Q9BXF3 1484 aa19■□□□□ 0.63
SMPD4-213ENST00000454468 RANGAP1P46060 587 aaPredicted RBP18.92■□□□□ 0.62
SMPD4-213ENST00000454468 TRIM26Q12899 539 aaPredicted RBP18.87■□□□□ 0.61
SMPD4-213ENST00000454468 RB1CC1Q8TDY2 1594 aa18.81■□□□□ 0.6
SMPD4-213ENST00000454468 NACADO15069 1562 aa18.78■□□□□ 0.6
SMPD4-213ENST00000454468 UBTFP17480 764 aaKnown RBP18.78■□□□□ 0.6
SMPD4-213ENST00000454468 MROH2BQ7Z745 1585 aa18.77■□□□□ 0.59
SMPD4-213ENST00000454468 WIZO95785 1651 aa18.61■□□□□ 0.57
SMPD4-213ENST00000454468 CCER1Q8TC90 406 aaPredicted RBP18.54■□□□□ 0.56
SMPD4-213ENST00000454468 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.53■□□□□ 0.56
SMPD4-213ENST00000454468 BAZ1AQ9NRL2 1556 aaPredicted RBP18.42■□□□□ 0.54
SMPD4-213ENST00000454468 APLP2Q06481 763 aa18.4■□□□□ 0.54
SMPD4-213ENST00000454468 ABCC8Q09428 1581 aa18.39■□□□□ 0.53
SMPD4-213ENST00000454468 CSRNP3Q8WYN3 585 aa18.38■□□□□ 0.53
SMPD4-213ENST00000454468 CCDC88BA6NC98 1476 aa18.35■□□□□ 0.53
SMPD4-213ENST00000454468 ZEB1P37275 1124 aaPredicted RBP18.35■□□□□ 0.53
SMPD4-213ENST00000454468 HNRNPUL2Q1KMD3 747 aaKnown RBP18.32■□□□□ 0.52
SMPD4-213ENST00000454468 SOGA1O94964 1423 aa18.29■□□□□ 0.52
SMPD4-213ENST00000454468 PELP1Q8IZL8 1130 aaKnown RBP18.2■□□□□ 0.5
SMPD4-213ENST00000454468 ATP1B4Q9UN42 357 aaPredicted RBP18.2■□□□□ 0.5
SMPD4-213ENST00000454468 SMARCA4P51532 1647 aa18.19■□□□□ 0.5
SMPD4-213ENST00000454468 RUSC2Q8N2Y8 1516 aa18.16■□□□□ 0.5
SMPD4-213ENST00000454468 TOP2AP11388 1531 aaKnown RBP18.14■□□□□ 0.5
SMPD4-213ENST00000454468 ITGAEP38570 1179 aa18.12■□□□□ 0.49
SMPD4-213ENST00000454468 WRNQ14191 1432 aaPredicted RBP eCLIP18.12■□□□□ 0.495e-6■■■■■ 34.5
SMPD4-213ENST00000454468 CEP162Q5TB80 1403 aa18.1■□□□□ 0.49
SMPD4-213ENST00000454468 BAZ1BQ9UIG0 1483 aaKnown RBP18.1■□□□□ 0.49
SMPD4-213ENST00000454468 SMARCA2P51531 1590 aa18.06■□□□□ 0.48
SMPD4-213ENST00000454468 UNC13AQ9UPW8 1703 aa17.97■□□□□ 0.47
SMPD4-213ENST00000454468 ATAD2BQ9ULI0 1458 aa17.96■□□□□ 0.47
SMPD4-213ENST00000454468 P3H3Q8IVL6 736 aa17.95■□□□□ 0.46
SMPD4-213ENST00000454468 YTHDC1Q96MU7 727 aaKnown RBP17.95■□□□□ 0.46
SMPD4-213ENST00000454468 BICRAQ9NZM4 1560 aa17.94■□□□□ 0.46
SMPD4-213ENST00000454468 TNIKQ9UKE5 1360 aa17.94■□□□□ 0.46
SMPD4-213ENST00000454468 CLIP1P30622 1438 aa17.9■□□□□ 0.46
SMPD4-213ENST00000454468 GOLGA3Q08378 1498 aa17.89■□□□□ 0.45
SMPD4-213ENST00000454468 DIEXFQ68CQ4 756 aaKnown RBP17.87■□□□□ 0.45
SMPD4-213ENST00000454468 EEA1Q15075 1411 aa17.83■□□□□ 0.44
SMPD4-213ENST00000454468 CEP164Q9UPV0 1460 aa17.77■□□□□ 0.44
SMPD4-213ENST00000454468 RAPGEF2Q9Y4G8 1499 aa17.76■□□□□ 0.43
SMPD4-213ENST00000454468 SYNJ1O43426 1573 aa17.73■□□□□ 0.43
SMPD4-213ENST00000454468 FAM50AQ14320 339 aaKnown RBP17.71■□□□□ 0.43
SMPD4-213ENST00000454468 EIF4G1Q04637 1599 aaKnown RBP17.69■□□□□ 0.42
SMPD4-213ENST00000454468 MYT1Q01538 1121 aa17.68■□□□□ 0.42
SMPD4-213ENST00000454468 KANK4Q5T7N3 995 aaPredicted RBP17.68■□□□□ 0.42
SMPD4-213ENST00000454468 ARID3CA6NKF2 412 aa17.66■□□□□ 0.42
SMPD4-213ENST00000454468 ZNF316A6NFI3 1004 aaPredicted RBP17.64■□□□□ 0.41
SMPD4-213ENST00000454468 CENPBP07199 599 aaPredicted RBP17.63■□□□□ 0.41
SMPD4-213ENST00000454468 KIF27Q86VH2 1401 aa17.61■□□□□ 0.41
SMPD4-213ENST00000454468 NEUROD1Q13562 356 aa17.58■□□□□ 0.41
SMPD4-213ENST00000454468 VPS8Q8N3P4 1428 aa17.58■□□□□ 0.4
SMPD4-213ENST00000454468 CUX2O14529 1486 aa17.57■□□□□ 0.4
SMPD4-213ENST00000454468 SCAF1Q9H7N4 1312 aaKnown RBP17.53■□□□□ 0.4
SMPD4-213ENST00000454468 NCAPD3P42695 1498 aa17.5■□□□□ 0.39
SMPD4-213ENST00000454468 DNAJC5BQ9UF47 199 aa17.49■□□□□ 0.39
SMPD4-213ENST00000454468 GTF3C3Q9Y5Q9 886 aa17.48■□□□□ 0.39
SMPD4-213ENST00000454468 CADPSQ9ULU8 1353 aa17.47■□□□□ 0.39
SMPD4-213ENST00000454468 PEG3Q9GZU2 1588 aa17.47■□□□□ 0.39
SMPD4-213ENST00000454468 MIER1Q8N108 512 aa17.46■□□□□ 0.39
SMPD4-213ENST00000454468 CARMIL1Q5VZK9 1371 aa17.46■□□□□ 0.39
SMPD4-213ENST00000454468 ACIN1Q9UKV3 1341 aaKnown RBP17.44■□□□□ 0.38
SMPD4-213ENST00000454468 CUX1P39880 1505 aa17.42■□□□□ 0.38
SMPD4-213ENST00000454468 FBLN2P98095 1184 aa17.4■□□□□ 0.38
SMPD4-213ENST00000454468 KIF21BO75037 1637 aa17.39■□□□□ 0.38
SMPD4-213ENST00000454468 HIRIP3Q9BW71 556 aaPredicted RBP17.38■□□□□ 0.37
SMPD4-213ENST00000454468 TDRD9Q8NDG6 1382 aaKnown RBP17.38■□□□□ 0.37
SMPD4-213ENST00000454468 TOP2BQ02880 1626 aa17.37■□□□□ 0.37
SMPD4-213ENST00000454468 CFTRP13569 1480 aa17.36■□□□□ 0.37
SMPD4-213ENST00000454468 IGF1RP08069 1367 aa17.36■□□□□ 0.37
SMPD4-213ENST00000454468 NESP48681 1621 aa17.35■□□□□ 0.37
SMPD4-213ENST00000454468 RAD54L2Q9Y4B4 1467 aa17.34■□□□□ 0.37
SMPD4-213ENST00000454468 ARAP1Q96P48 1450 aa17.33■□□□□ 0.37
SMPD4-213ENST00000454468 FGD5Q6ZNL6 1462 aa17.32■□□□□ 0.36
SMPD4-213ENST00000454468 CHIC2Q9UKJ5 165 aa17.32■□□□□ 0.36
SMPD4-213ENST00000454468 SIN3AQ96ST3 1273 aa17.31■□□□□ 0.36
SMPD4-213ENST00000454468 FANCD2Q9BXW9 1451 aa17.3■□□□□ 0.36
SMPD4-213ENST00000454468 PRXQ9BXM0 1461 aa17.29■□□□□ 0.36
SMPD4-213ENST00000454468 CCNB3Q8WWL7 1395 aa17.29■□□□□ 0.36
SMPD4-213ENST00000454468 HMGXB3Q12766 1538 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms