RNA–Protein interactions for RNA: ENST00000450251.5

USP53-202, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP53, Length 6,072 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-202ENST00000450251 KRTAP23-1A1A580 65 aa1.15□□□□□ -2.22
USP53-202ENST00000450251 KRTAP1-5Q9BYS1 174 aa1.15□□□□□ -2.22
USP53-202ENST00000450251 DCHS2Q6V1P9 2916 aa1.15□□□□□ -2.23
USP53-202ENST00000450251 KRTAP9-8Q9BYQ0 159 aa1.15□□□□□ -2.23
USP53-202ENST00000450251 HRNRQ86YZ3 2850 aaPredicted RBP1.15□□□□□ -2.23
USP53-202ENST00000450251 KRTAP13-2Q52LG2 175 aa1.15□□□□□ -2.23
USP53-202ENST00000450251 LCE1DQ5T752 114 aa1.15□□□□□ -2.23
USP53-202ENST00000450251 KRTAP4-11Q9BYQ6 195 aa1.15□□□□□ -2.23
USP53-202ENST00000450251 ANK2Q01484 3957 aa1.15□□□□□ -2.23
USP53-202ENST00000450251 LRP1BQ9NZR2 4599 aa1.15□□□□□ -2.23
USP53-202ENST00000450251 PKHD1L1Q86WI1 4243 aa1.14□□□□□ -2.23
USP53-202ENST00000450251 KRTAP13-4Q3LI77 160 aa1.14□□□□□ -2.23
USP53-202ENST00000450251 LCE5AQ5TCM9 118 aa1.14□□□□□ -2.23
USP53-202ENST00000450251 KRTAP4-9Q9BYQ8 210 aa1.14□□□□□ -2.23
USP53-202ENST00000450251 KIAA1109Q2LD37 5005 aa1.14□□□□□ -2.23
USP53-202ENST00000450251 KRTAP5-9P26371 169 aa1.13□□□□□ -2.23
USP53-202ENST00000450251 ABCA13Q86UQ4 5058 aa1.13□□□□□ -2.23
USP53-202ENST00000450251 CELSR1Q9NYQ6 3014 aa1.13□□□□□ -2.23
USP53-202ENST00000450251 ADGRG4Q8IZF6 3080 aa1.13□□□□□ -2.23
USP53-202ENST00000450251 RYR3Q15413 4870 aa1.13□□□□□ -2.23
USP53-202ENST00000450251 SPEGQ15772 3267 aa1.12□□□□□ -2.23
USP53-202ENST00000450251 KRTAP12-1P59990 96 aa1.12□□□□□ -2.23
USP53-202ENST00000450251 KRTAP12-2P59991 146 aa1.12□□□□□ -2.23
USP53-202ENST00000450251 KRTAP10-8P60410 259 aa1.11□□□□□ -2.23
USP53-202ENST00000450251 SRRM2Q9UQ35 2752 aaKnown RBP1.11□□□□□ -2.23
USP53-202ENST00000450251 HECTD4Q9Y4D8 3996 aa1.1□□□□□ -2.23
USP53-202ENST00000450251 ALMS1Q8TCU4 4167 aa1.1□□□□□ -2.23
USP53-202ENST00000450251 KRTAP10-1P60331 282 aa1.1□□□□□ -2.23
USP53-202ENST00000450251 FREM2Q5SZK8 3169 aa1.09□□□□□ -2.23
USP53-202ENST00000450251 KRTAP1-4P0C5Y4 121 aa1.09□□□□□ -2.23
USP53-202ENST00000450251 HERC1Q15751 4861 aa1.09□□□□□ -2.23
USP53-202ENST00000450251 VPS13AQ96RL7 3174 aa1.09□□□□□ -2.23
USP53-202ENST00000450251 VPS13BQ7Z7G8 4022 aa1.08□□□□□ -2.24
USP53-202ENST00000450251 LYSTQ99698 3801 aa1.08□□□□□ -2.24
USP53-202ENST00000450251 KRTAP10-6P60371 365 aaPredicted RBP1.08□□□□□ -2.24
USP53-202ENST00000450251 EPPK1P58107 5090 aaKnown RBP1.08□□□□□ -2.24
USP53-202ENST00000450251 SMR3BP02814 79 aaPredicted RBP1.07□□□□□ -2.24
USP53-202ENST00000450251 COL7A1Q02388 2944 aa1.07□□□□□ -2.24
USP53-202ENST00000450251 LAMA1P25391 3075 aa1.07□□□□□ -2.24
USP53-202ENST00000450251 PRKDCP78527 4128 aaKnown RBP1.07□□□□□ -2.24
USP53-202ENST00000450251 OBSCNQ5VST9 7968 aa1.06□□□□□ -2.24
USP53-202ENST00000450251 KRTAP5-4Q6L8H1 288 aa1.05□□□□□ -2.24
USP53-202ENST00000450251 KMT2CQ8NEZ4 4911 aaKnown RBP1.05□□□□□ -2.24
USP53-202ENST00000450251 CMYA5Q8N3K9 4069 aa1.04□□□□□ -2.24
USP53-202ENST00000450251 DNAH11Q96DT5 4516 aa1.03□□□□□ -2.24
USP53-202ENST00000450251 LOC400499M0QZD8 3231 aa1.03□□□□□ -2.24
USP53-202ENST00000450251 M0R2T5 61 aa1.03□□□□□ -2.24
USP53-202ENST00000450251 VCANP13611 3396 aa1.03□□□□□ -2.25
USP53-202ENST00000450251 SSPOA2VEC9 5147 aa1.02□□□□□ -2.25
USP53-202ENST00000450251 HMCN2Q8NDA2 5059 aa1.02□□□□□ -2.25
USP53-202ENST00000450251 FRAS1Q86XX4 4008 aa1.02□□□□□ -2.25
USP53-202ENST00000450251 FAT3Q8TDW7 4589 aa1.02□□□□□ -2.25
USP53-202ENST00000450251 DNAH6Q9C0G6 4158 aa1.01□□□□□ -2.25
USP53-202ENST00000450251 A0A1B0GVY2 172 aa1.01□□□□□ -2.25
USP53-202ENST00000450251 PLECQ15149 4684 aaKnown RBP1.01□□□□□ -2.25
USP53-202ENST00000450251 DNAH10Q8IVF4 4471 aa1□□□□□ -2.25
USP53-202ENST00000450251 DYNC2H1Q8NCM8 4307 aaKnown RBP1□□□□□ -2.25
USP53-202ENST00000450251 FAT4Q6V0I7 4981 aa0.99□□□□□ -2.25
USP53-202ENST00000450251 UBR4Q5T4S7 5183 aa0.99□□□□□ -2.25
USP53-202ENST00000450251 LCE1AQ5T7P2 110 aa0.99□□□□□ -2.25
USP53-202ENST00000450251 RNF213Q63HN8 5207 aa0.98□□□□□ -2.25
USP53-202ENST00000450251 USH2AO75445 5202 aa0.98□□□□□ -2.25
USP53-202ENST00000450251 DNAH17Q9UFH2 4485 aa0.98□□□□□ -2.25
USP53-202ENST00000450251 SPRR5A0A1B0GTR4 108 aa0.97□□□□□ -2.25
USP53-202ENST00000450251 KRTAP19-4Q3LI73 84 aa0.97□□□□□ -2.25
USP53-202ENST00000450251 MYCBP2O75592 4640 aa0.96□□□□□ -2.26
USP53-202ENST00000450251 XIRP2A4UGR9 3374 aa0.96□□□□□ -2.26
USP53-202ENST00000450251 GPR98Q8WXG9 6306 aa0.96□□□□□ -2.26
USP53-202ENST00000450251 FLG2Q5D862 2391 aaPredicted RBP0.96□□□□□ -2.26
USP53-202ENST00000450251 DNAH1Q9P2D7 4330 aa0.96□□□□□ -2.26
USP53-202ENST00000450251 HMCN1Q96RW7 5635 aa0.95□□□□□ -2.26
USP53-202ENST00000450251 LCE1FQ5T754 118 aa0.95□□□□□ -2.26
USP53-202ENST00000450251 KRTAP10-4P60372 401 aaPredicted RBP0.95□□□□□ -2.26
USP53-202ENST00000450251 DYNC1H1Q14204 4646 aaKnown RBP0.94□□□□□ -2.26
USP53-202ENST00000450251 VPS13CQ709C8 3753 aa0.94□□□□□ -2.26
USP53-202ENST00000450251 ANK3Q12955 4377 aaKnown RBP0.94□□□□□ -2.26
USP53-202ENST00000450251 HUWE1Q7Z6Z7 4374 aaKnown RBP0.94□□□□□ -2.26
USP53-202ENST00000450251 KRTAP10-12P60413 245 aa0.93□□□□□ -2.26
USP53-202ENST00000450251 DNAH2Q9P225 4427 aa0.93□□□□□ -2.26
USP53-202ENST00000450251 KRTAP12-3P60328 96 aa0.93□□□□□ -2.26
USP53-202ENST00000450251 DNAH3Q8TD57 4116 aa0.93□□□□□ -2.26
USP53-202ENST00000450251 PKHD1P08F94 4074 aa0.93□□□□□ -2.26
USP53-202ENST00000450251 STARD9Q9P2P6 4700 aa0.92□□□□□ -2.26
USP53-202ENST00000450251 MUC5BQ9HC84 5762 aaPredicted RBP0.92□□□□□ -2.26
USP53-202ENST00000450251 CELSR3Q9NYQ7 3312 aa0.92□□□□□ -2.26
USP53-202ENST00000450251 SACSQ9NZJ4 4579 aa0.92□□□□□ -2.26
USP53-202ENST00000450251 LCE3AQ5TA76 89 aa0.92□□□□□ -2.26
USP53-202ENST00000450251 KRTAP5-8O75690 187 aa0.91□□□□□ -2.26
USP53-202ENST00000450251 KRTAP10-10P60014 251 aa0.91□□□□□ -2.26
USP53-202ENST00000450251 KRTAP5-5Q701N2 237 aaPredicted RBP0.91□□□□□ -2.26
USP53-202ENST00000450251 KRTAP2-2Q9BYT5 123 aa0.9□□□□□ -2.26
USP53-202ENST00000450251 DNAH9Q9NYC9 4486 aa0.9□□□□□ -2.27
USP53-202ENST00000450251 MT1HL1P0DM35 61 aa0.9□□□□□ -2.27
USP53-202ENST00000450251 APOBP04114 4563 aaKnown RBP0.89□□□□□ -2.27
USP53-202ENST00000450251 VPS13DQ5THJ4 4388 aa0.89□□□□□ -2.27
USP53-202ENST00000450251 HSPG2P98160 4391 aa0.89□□□□□ -2.27
USP53-202ENST00000450251 KRTAP5-11Q6L8G4 156 aa0.88□□□□□ -2.27
USP53-202ENST00000450251 KRTAP8-1Q8IUC2 63 aa0.87□□□□□ -2.27
USP53-202ENST00000450251 MUC2Q02817 5179 aa0.87□□□□□ -2.27
USP53-202ENST00000450251 DNAH5Q8TE73 4624 aa0.87□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms