RNA–Protein interactions for RNA: ENST00000450251.5

USP53-202, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP53, Length 6,072 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-202ENST00000450251 AEBP2Q6ZN18 517 aaPredicted RBP5.1□□□□□ -1.59
USP53-202ENST00000450251 CHIC1Q5VXU3 224 aa4.65□□□□□ -1.67
USP53-202ENST00000450251 PHF23Q9BUL5 403 aaPredicted RBP4.4□□□□□ -1.71
USP53-202ENST00000450251 MYT1Q01538 1121 aa3.95□□□□□ -1.78
USP53-202ENST00000450251 PPP6R1Q9UPN7 881 aa3.93□□□□□ -1.78
USP53-202ENST00000450251 PELP1Q8IZL8 1130 aaKnown RBP3.9□□□□□ -1.79
USP53-202ENST00000450251 FOXD1Q16676 465 aa3.87□□□□□ -1.79
USP53-202ENST00000450251 SENP3Q9H4L4 574 aaPredicted RBP3.82□□□□□ -1.8
USP53-202ENST00000450251 ADRA2BP18089 450 aa3.82□□□□□ -1.8
USP53-202ENST00000450251 NISCHQ9Y2I1 1504 aa3.72□□□□□ -1.81
USP53-202ENST00000450251 TTBK1Q5TCY1 1321 aaPredicted RBP3.72□□□□□ -1.81
USP53-202ENST00000450251 PLPPR3Q6T4P5 718 aa3.61□□□□□ -1.83
USP53-202ENST00000450251 MYO15BQ96JP2 1530 aa3.6□□□□□ -1.83
USP53-202ENST00000450251 SHROOM4Q9ULL8 1493 aa3.58□□□□□ -1.84
USP53-202ENST00000450251 CCDC180Q9P1Z9 1646 aa3.54□□□□□ -1.84
USP53-202ENST00000450251 ERICH6Q7L0X2 663 aa3.53□□□□□ -1.84
USP53-202ENST00000450251 ZEB1P37275 1124 aaPredicted RBP3.51□□□□□ -1.85
USP53-202ENST00000450251 CENPBP07199 599 aaPredicted RBP3.49□□□□□ -1.85
USP53-202ENST00000450251 MAPK8IP2Q13387 824 aaPredicted RBP3.48□□□□□ -1.85
USP53-202ENST00000450251 CCER1Q8TC90 406 aaPredicted RBP3.45□□□□□ -1.86
USP53-202ENST00000450251 PIAS4Q8N2W9 510 aaPredicted RBP3.42□□□□□ -1.86
USP53-202ENST00000450251 DCAF1Q9Y4B6 1507 aa3.42□□□□□ -1.86
USP53-202ENST00000450251 KCNA4P22459 653 aa3.41□□□□□ -1.86
USP53-202ENST00000450251 HRCP23327 699 aa3.41□□□□□ -1.86
USP53-202ENST00000450251 YTHDC1Q96MU7 727 aaKnown RBP3.4□□□□□ -1.86
USP53-202ENST00000450251 ZBTB22O15209 634 aa3.36□□□□□ -1.87
USP53-202ENST00000450251 MYT1LQ9UL68 1186 aa3.36□□□□□ -1.87
USP53-202ENST00000450251 CLSPNQ9HAW4 1339 aa3.35□□□□□ -1.87
USP53-202ENST00000450251 NACADO15069 1562 aa3.35□□□□□ -1.87
USP53-202ENST00000450251 NPM3O75607 178 aaKnown RBP3.29□□□□□ -1.88
USP53-202ENST00000450251 NEFLP07196 543 aa3.28□□□□□ -1.88
USP53-202ENST00000450251 GLIPR1L2Q4G1C9 344 aa3.27□□□□□ -1.89
USP53-202ENST00000450251 PPP4R3CPQ6ZMV5 832 aa3.27□□□□□ -1.89
USP53-202ENST00000450251 PCGF6Q9BYE7 350 aa3.27□□□□□ -1.89
USP53-202ENST00000450251 RB1CC1Q8TDY2 1594 aa3.27□□□□□ -1.89
USP53-202ENST00000450251 TRIM26Q12899 539 aaPredicted RBP3.26□□□□□ -1.89
USP53-202ENST00000450251 SLC4A2P04920 1241 aa3.24□□□□□ -1.89
USP53-202ENST00000450251 ACIN1Q9UKV3 1341 aaKnown RBP3.23□□□□□ -1.89
USP53-202ENST00000450251 RTL5Q5HYW3 569 aaPredicted RBP3.22□□□□□ -1.89
USP53-202ENST00000450251 RANGAP1P46060 587 aaPredicted RBP3.22□□□□□ -1.89
USP53-202ENST00000450251 SLC24A1O60721 1099 aa3.21□□□□□ -1.9
USP53-202ENST00000450251 BAZ1BQ9UIG0 1483 aaKnown RBP3.19□□□□□ -1.9
USP53-202ENST00000450251 ANP32EQ9BTT0 268 aa3.19□□□□□ -1.9
USP53-202ENST00000450251 BCL11AQ9H165 835 aa3.19□□□□□ -1.9
USP53-202ENST00000450251 GTF3C3Q9Y5Q9 886 aa3.19□□□□□ -1.9
USP53-202ENST00000450251 POTEDQ86YR6 584 aa3.18□□□□□ -1.9
USP53-202ENST00000450251 CSRNP3Q8WYN3 585 aa3.18□□□□□ -1.9
USP53-202ENST00000450251 DMRT2Q9Y5R5 561 aa3.18□□□□□ -1.9
USP53-202ENST00000450251 HOXD11P31277 338 aaPredicted RBP3.17□□□□□ -1.9
USP53-202ENST00000450251 SUPT5HO00267 1087 aaKnown RBP3.16□□□□□ -1.9
USP53-202ENST00000450251 DNAJC5BQ9UF47 199 aa3.16□□□□□ -1.9
USP53-202ENST00000450251 SCAF1Q9H7N4 1312 aaKnown RBP3.16□□□□□ -1.9
USP53-202ENST00000450251 FAM9AQ8IZU1 332 aaPredicted RBP3.16□□□□□ -1.9
USP53-202ENST00000450251 ERICH6BQ5W0A0 696 aa3.15□□□□□ -1.9
USP53-202ENST00000450251 DIEXFQ68CQ4 756 aaKnown RBP3.15□□□□□ -1.9
USP53-202ENST00000450251 BICRAQ9NZM4 1560 aa3.15□□□□□ -1.91
USP53-202ENST00000450251 MSH5O43196 834 aa3.15□□□□□ -1.91
USP53-202ENST00000450251 ATF5Q9Y2D1 282 aaPredicted RBP3.14□□□□□ -1.91
USP53-202ENST00000450251 DAXXQ9UER7 740 aaPredicted RBP3.14□□□□□ -1.91
USP53-202ENST00000450251 EIF5BO60841 1220 aaKnown RBP3.13□□□□□ -1.91
USP53-202ENST00000450251 CDK11AQ9UQ88 783 aaPredicted RBP3.13□□□□□ -1.91
USP53-202ENST00000450251 APLP2Q06481 763 aa3.12□□□□□ -1.91
USP53-202ENST00000450251 CUX2O14529 1486 aa3.12□□□□□ -1.91
USP53-202ENST00000450251 PEG3Q9GZU2 1588 aa3.12□□□□□ -1.91
USP53-202ENST00000450251 ZNF316A6NFI3 1004 aaPredicted RBP3.11□□□□□ -1.91
USP53-202ENST00000450251 PPARGC1BQ86YN6 1023 aaKnown RBP3.11□□□□□ -1.91
USP53-202ENST00000450251 ZCCHC6Q5VYS8 1495 aaKnown RBP3.11□□□□□ -1.91
USP53-202ENST00000450251 NCAPD3P42695 1498 aa3.1□□□□□ -1.91
USP53-202ENST00000450251 ABCC9O60706 1549 aa3.1□□□□□ -1.91
USP53-202ENST00000450251 NCLP19338 710 aaKnown RBP3.1□□□□□ -1.91
USP53-202ENST00000450251 ANP32AP39687 249 aaKnown RBP3.09□□□□□ -1.91
USP53-202ENST00000450251 EHMT2Q96KQ7 1210 aa3.09□□□□□ -1.92
USP53-202ENST00000450251 HMGXB3Q12766 1538 aa3.08□□□□□ -1.92
USP53-202ENST00000450251 PRKCSHP14314 528 aaPredicted RBP3.08□□□□□ -1.92
USP53-202ENST00000450251 CNKSR2Q8WXI2 1034 aa3.08□□□□□ -1.92
USP53-202ENST00000450251 ZNF326Q5BKZ1 582 aaKnown RBP3.07□□□□□ -1.92
USP53-202ENST00000450251 DNAJC5Q9H3Z4 198 aa3.06□□□□□ -1.92
USP53-202ENST00000450251 RNF216Q9NWF9 866 aaPredicted RBP3.06□□□□□ -1.92
USP53-202ENST00000450251 NEUROD1Q13562 356 aa3.06□□□□□ -1.92
USP53-202ENST00000450251 TNNT2P45379 298 aaPredicted RBP3.06□□□□□ -1.92
USP53-202ENST00000450251 TRIM44Q96DX7 344 aaPredicted RBP3.05□□□□□ -1.92
USP53-202ENST00000450251 U3KPZ7 1027 aaPredicted RBP3.04□□□□□ -1.92
USP53-202ENST00000450251 SMARCA2P51531 1590 aa3.03□□□□□ -1.92
USP53-202ENST00000450251 DDRGK1Q96HY6 314 aa3.03□□□□□ -1.92
USP53-202ENST00000450251 EIF4G1Q04637 1599 aaKnown RBP3.03□□□□□ -1.92
USP53-202ENST00000450251 DCAF8L2P0C7V8 631 aa3.03□□□□□ -1.92
USP53-202ENST00000450251 RSPH6AQ9H0K4 717 aa3.03□□□□□ -1.92
USP53-202ENST00000450251 ARID4BQ4LE39 1312 aaPredicted RBP3.02□□□□□ -1.93
USP53-202ENST00000450251 PPM1GO15355 546 aaPredicted RBP3.02□□□□□ -1.93
USP53-202ENST00000450251 TRIM41Q8WV44 630 aa3.02□□□□□ -1.93
USP53-202ENST00000450251 ANP32BQ92688 251 aaKnown RBP3.02□□□□□ -1.93
USP53-202ENST00000450251 SPINK5Q9NQ38 1064 aaPredicted RBP3.01□□□□□ -1.93
USP53-202ENST00000450251 ZBTB47Q9UFB7 747 aaPredicted RBP3.01□□□□□ -1.93
USP53-202ENST00000450251 WDR97A6NE52 1622 aa3.01□□□□□ -1.93
USP53-202ENST00000450251 DEKP35659 375 aaKnown RBP3□□□□□ -1.93
USP53-202ENST00000450251 PKNOX2Q96KN3 472 aa3□□□□□ -1.93
USP53-202ENST00000450251 POLR3GLQ9BT43 218 aa3□□□□□ -1.93
USP53-202ENST00000450251 UBE2Q2Q8WVN8 375 aa2.99□□□□□ -1.93
USP53-202ENST00000450251 ANP32CO43423 234 aa2.99□□□□□ -1.93
USP53-202ENST00000450251 RNF39Q9H2S5 420 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 270 ms