RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 DNAH1Q9P2D7 4330 aa4.11□□□□□ -1.75
TMEM39A-202ENST00000438581 DNAH11Q96DT5 4516 aa4.11□□□□□ -1.75
TMEM39A-202ENST00000438581 KRTAP10-4P60372 401 aaPredicted RBP4.11□□□□□ -1.75
TMEM39A-202ENST00000438581 MT1HL1P0DM35 61 aa4.1□□□□□ -1.75
TMEM39A-202ENST00000438581 DNAH5Q8TE73 4624 aa4.1□□□□□ -1.75
TMEM39A-202ENST00000438581 STARD9Q9P2P6 4700 aa4.09□□□□□ -1.76
TMEM39A-202ENST00000438581 C10orf95Q9H7T3 257 aa4.04□□□□□ -1.76
TMEM39A-202ENST00000438581 VPS13DQ5THJ4 4388 aa4.03□□□□□ -1.76
TMEM39A-202ENST00000438581 KRTAP3-1Q9BYR8 98 aa4.02□□□□□ -1.77
TMEM39A-202ENST00000438581 FAT1Q14517 4588 aa4.01□□□□□ -1.77
TMEM39A-202ENST00000438581 KRTAP10-10P60014 251 aa4□□□□□ -1.77
TMEM39A-202ENST00000438581 KMT2AQ03164 3969 aa4□□□□□ -1.77
TMEM39A-202ENST00000438581 FRAS1Q86XX4 4008 aa3.99□□□□□ -1.77
TMEM39A-202ENST00000438581 LCE2BO14633 110 aa3.98□□□□□ -1.77
TMEM39A-202ENST00000438581 ALMS1Q8TCU4 4167 aa3.98□□□□□ -1.77
TMEM39A-202ENST00000438581 DYNC1H1Q14204 4646 aaKnown RBP3.98□□□□□ -1.77
TMEM39A-202ENST00000438581 KRTAP12-2P59991 146 aa3.96□□□□□ -1.77
TMEM39A-202ENST00000438581 LRP1BQ9NZR2 4599 aa3.95□□□□□ -1.78
TMEM39A-202ENST00000438581 DNAH17Q9UFH2 4485 aa3.94□□□□□ -1.78
TMEM39A-202ENST00000438581 DNAH2Q9P225 4427 aa3.94□□□□□ -1.78
TMEM39A-202ENST00000438581 KIAA1109Q2LD37 5005 aa3.93□□□□□ -1.78
TMEM39A-202ENST00000438581 RYR1P21817 5038 aa3.93□□□□□ -1.78
TMEM39A-202ENST00000438581 DYNC2H1Q8NCM8 4307 aaKnown RBP3.91□□□□□ -1.78
TMEM39A-202ENST00000438581 TNP1P09430 55 aa3.91□□□□□ -1.78
TMEM39A-202ENST00000438581 HECTD4Q9Y4D8 3996 aa3.91□□□□□ -1.78
TMEM39A-202ENST00000438581 DNAH6Q9C0G6 4158 aa3.89□□□□□ -1.79
TMEM39A-202ENST00000438581 LCE2CQ5TA81 110 aa3.87□□□□□ -1.79
TMEM39A-202ENST00000438581 DNAH8Q96JB1 4490 aa3.87□□□□□ -1.79
TMEM39A-202ENST00000438581 HYDINQ4G0P3 5121 aa3.86□□□□□ -1.79
TMEM39A-202ENST00000438581 RYR3Q15413 4870 aa3.84□□□□□ -1.79
TMEM39A-202ENST00000438581 FAT2Q9NYQ8 4349 aa3.83□□□□□ -1.8
TMEM39A-202ENST00000438581 KRTAP10-6P60371 365 aaPredicted RBP3.82□□□□□ -1.8
TMEM39A-202ENST00000438581 SACSQ9NZJ4 4579 aa3.82□□□□□ -1.8
TMEM39A-202ENST00000438581 KRTAP13-4Q3LI77 160 aa3.81□□□□□ -1.8
TMEM39A-202ENST00000438581 LORP23490 312 aaPredicted RBP3.81□□□□□ -1.8
TMEM39A-202ENST00000438581 MYCBP2O75592 4640 aa3.8□□□□□ -1.8
TMEM39A-202ENST00000438581 LCE2AQ5TA79 106 aaPredicted RBP3.79□□□□□ -1.8
TMEM39A-202ENST00000438581 KRTAP12-1P59990 96 aa3.78□□□□□ -1.8
TMEM39A-202ENST00000438581 VPS13BQ7Z7G8 4022 aa3.77□□□□□ -1.81
TMEM39A-202ENST00000438581 KRTAP17-1Q9BYP8 105 aa3.77□□□□□ -1.81
TMEM39A-202ENST00000438581 APOBP04114 4563 aaKnown RBP3.77□□□□□ -1.81
TMEM39A-202ENST00000438581 PKHD1P08F94 4074 aa3.76□□□□□ -1.81
TMEM39A-202ENST00000438581 LRP1Q07954 4544 aaKnown RBP3.75□□□□□ -1.81
TMEM39A-202ENST00000438581 PKD1P98161 4303 aa3.74□□□□□ -1.81
TMEM39A-202ENST00000438581 FAT3Q8TDW7 4589 aa3.74□□□□□ -1.81
TMEM39A-202ENST00000438581 RYR2Q92736 4967 aa3.72□□□□□ -1.81
TMEM39A-202ENST00000438581 KRTAP4-1Q9BYQ7 146 aa3.7□□□□□ -1.82
TMEM39A-202ENST00000438581 KMT2CQ8NEZ4 4911 aaKnown RBP3.69□□□□□ -1.82
TMEM39A-202ENST00000438581 HERC2O95714 4834 aa3.65□□□□□ -1.82
TMEM39A-202ENST00000438581 SPRR5A0A1B0GTR4 108 aa3.6□□□□□ -1.83
TMEM39A-202ENST00000438581 LRP2P98164 4655 aa3.58□□□□□ -1.84
TMEM39A-202ENST00000438581 HSPG2P98160 4391 aa3.55□□□□□ -1.84
TMEM39A-202ENST00000438581 BIRC6Q9NR09 4857 aa3.54□□□□□ -1.84
TMEM39A-202ENST00000438581 EPPK1P58107 5090 aaKnown RBP3.51□□□□□ -1.85
TMEM39A-202ENST00000438581 MT1HP80294 61 aa3.5□□□□□ -1.85
TMEM39A-202ENST00000438581 PKHD1L1Q86WI1 4243 aa3.5□□□□□ -1.85
TMEM39A-202ENST00000438581 KRTAP19-4Q3LI73 84 aa3.5□□□□□ -1.85
TMEM39A-202ENST00000438581 MT2AP02795 61 aa3.44□□□□□ -1.86
TMEM39A-202ENST00000438581 ABCA13Q86UQ4 5058 aa3.42□□□□□ -1.86
TMEM39A-202ENST00000438581 KRTAP10-12P60413 245 aa3.42□□□□□ -1.86
TMEM39A-202ENST00000438581 PCLOQ9Y6V0 5065 aa3.42□□□□□ -1.86
TMEM39A-202ENST00000438581 LPAP08519 4548 aa3.42□□□□□ -1.86
TMEM39A-202ENST00000438581 MT1FP04733 61 aa3.4□□□□□ -1.86
TMEM39A-202ENST00000438581 TNXBP22105 4242 aa3.39□□□□□ -1.87
TMEM39A-202ENST00000438581 HERC1Q15751 4861 aa3.37□□□□□ -1.87
TMEM39A-202ENST00000438581 LCE3AQ5TA76 89 aa3.35□□□□□ -1.87
TMEM39A-202ENST00000438581 SPRR2GQ9BYE4 73 aa3.34□□□□□ -1.88
TMEM39A-202ENST00000438581 KRTAP12-3P60328 96 aa3.32□□□□□ -1.88
TMEM39A-202ENST00000438581 KRTAP19-1Q8IUB9 90 aa3.26□□□□□ -1.89
TMEM39A-202ENST00000438581 CRCT1Q9UGL9 99 aa3.24□□□□□ -1.89
TMEM39A-202ENST00000438581 KRTAP9-8Q9BYQ0 159 aa3.22□□□□□ -1.89
TMEM39A-202ENST00000438581 MUC2Q02817 5179 aa3.22□□□□□ -1.89
TMEM39A-202ENST00000438581 RNF213Q63HN8 5207 aa3.21□□□□□ -1.89
TMEM39A-202ENST00000438581 KRTAP8-1Q8IUC2 63 aa3.21□□□□□ -1.9
TMEM39A-202ENST00000438581 KRTAP19-2Q3LHN2 52 aa3.2□□□□□ -1.9
TMEM39A-202ENST00000438581 MT3P25713 68 aa3.19□□□□□ -1.9
TMEM39A-202ENST00000438581 UBR4Q5T4S7 5183 aa3.18□□□□□ -1.9
TMEM39A-202ENST00000438581 FSIP2Q5CZC0 6907 aa3.17□□□□□ -1.9
TMEM39A-202ENST00000438581 KRTAP19-8Q3LI54 63 aa3.16□□□□□ -1.9
TMEM39A-202ENST00000438581 MUC17Q685J3 4493 aa3.15□□□□□ -1.9
TMEM39A-202ENST00000438581 FAT4Q6V0I7 4981 aa3.13□□□□□ -1.91
TMEM39A-202ENST00000438581 MT1BP07438 61 aa3.13□□□□□ -1.91
TMEM39A-202ENST00000438581 KRTAP9-3Q9BYQ3 159 aa3.11□□□□□ -1.91
TMEM39A-202ENST00000438581 KRTAP10-7P60409 375 aaPredicted RBP3.11□□□□□ -1.91
TMEM39A-202ENST00000438581 HMCN2Q8NDA2 5059 aa3.1□□□□□ -1.91
TMEM39A-202ENST00000438581 FLGP20930 4061 aaPredicted RBP3.09□□□□□ -1.91
TMEM39A-202ENST00000438581 MT1XP80297 61 aa3.09□□□□□ -1.91
TMEM39A-202ENST00000438581 KRTAP19-5Q3LI72 72 aa3.09□□□□□ -1.92
TMEM39A-202ENST00000438581 KRTAP10-5P60370 271 aa3.06□□□□□ -1.92
TMEM39A-202ENST00000438581 SPRR2FQ96RM1 72 aa3.06□□□□□ -1.92
TMEM39A-202ENST00000438581 KRTAP4-8A0A0G2JLE6 195 aa3.02□□□□□ -1.93
TMEM39A-202ENST00000438581 KRTAP4-8Q9BYQ9 185 aa3.02□□□□□ -1.93
TMEM39A-202ENST00000438581 LCE3CQ5T5A8 94 aa2.94□□□□□ -1.94
TMEM39A-202ENST00000438581 KRTAP2-2Q9BYT5 123 aa2.91□□□□□ -1.94
TMEM39A-202ENST00000438581 SYNE1Q8NF91 8797 aaKnown RBP2.84□□□□□ -1.95
TMEM39A-202ENST00000438581 SPRR2EP22531 72 aa2.84□□□□□ -1.95
TMEM39A-202ENST00000438581 SPRR2BP35325 72 aa2.84□□□□□ -1.95
TMEM39A-202ENST00000438581 SPRR2AP35326 72 aa2.84□□□□□ -1.95
TMEM39A-202ENST00000438581 OBSCNQ5VST9 7968 aa2.84□□□□□ -1.96
TMEM39A-202ENST00000438581 LOC100996750A0A140TA64 210 aa2.83□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms