RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 PRO2289Q9P1D8 64 aa2.72□□□□□ -1.97
VPS13A-207ENST00000419472 DNAH1Q9P2D7 4330 aa2.71□□□□□ -1.97
VPS13A-207ENST00000419472 UQCR11O14957 56 aa2.71□□□□□ -1.98
VPS13A-207ENST00000419472 C6orf48Q9UBA6 75 aa2.71□□□□□ -1.98
VPS13A-207ENST00000419472 IGKV2-24A0A0C4DH68 120 aa2.7□□□□□ -1.98
VPS13A-207ENST00000419472 LY6G6CO95867 125 aa2.7□□□□□ -1.98
VPS13A-207ENST00000419472 TP53AIP1Q9HCN2 124 aa2.7□□□□□ -1.98
VPS13A-207ENST00000419472 A0A1B0GU69 56 aa2.7□□□□□ -1.98
VPS13A-207ENST00000419472 RPL37AP61513 92 aaKnown RBP2.7□□□□□ -1.98
VPS13A-207ENST00000419472 TPRXLQ17RH7 258 aa2.69□□□□□ -1.98
VPS13A-207ENST00000419472 DMBT1Q9UGM3 2413 aaPredicted RBP2.69□□□□□ -1.98
VPS13A-207ENST00000419472 FSIP2Q5CZC0 6907 aa2.69□□□□□ -1.98
VPS13A-207ENST00000419472 LINC01556Q5JQF7 62 aa2.69□□□□□ -1.98
VPS13A-207ENST00000419472 KRTAP26-1Q6PEX3 210 aa2.69□□□□□ -1.98
VPS13A-207ENST00000419472 UBE2DNLQ8IWF7 75 aa2.69□□□□□ -1.98
VPS13A-207ENST00000419472 FRAS1Q86XX4 4008 aa2.69□□□□□ -1.98
VPS13A-207ENST00000419472 DNAH6Q9C0G6 4158 aa2.68□□□□□ -1.98
VPS13A-207ENST00000419472 A0A087WSZ3 146 aa2.68□□□□□ -1.98
VPS13A-207ENST00000419472 MMP24-AS1A0A0U1RRL7 71 aa2.68□□□□□ -1.98
VPS13A-207ENST00000419472 KRTAP10-6P60371 365 aaPredicted RBP2.67□□□□□ -1.98
VPS13A-207ENST00000419472 Q6ZRX8 168 aa2.67□□□□□ -1.98
VPS13A-207ENST00000419472 SPACA4Q8TDM5 124 aa2.67□□□□□ -1.98
VPS13A-207ENST00000419472 DNAH2Q9P225 4427 aa2.67□□□□□ -1.98
VPS13A-207ENST00000419472 ACYP2P14621 99 aa2.67□□□□□ -1.98
VPS13A-207ENST00000419472 IGFL1Q6UW32 110 aa2.67□□□□□ -1.98
VPS13A-207ENST00000419472 LINC00472Q9H8W2 130 aa2.67□□□□□ -1.98
VPS13A-207ENST00000419472 A0A1B0GVY2 172 aa2.66□□□□□ -1.98
VPS13A-207ENST00000419472 VPS13DQ5THJ4 4388 aa2.66□□□□□ -1.98
VPS13A-207ENST00000419472 FLG2Q5D862 2391 aaPredicted RBP2.66□□□□□ -1.98
VPS13A-207ENST00000419472 SPRR1AP35321 89 aa2.66□□□□□ -1.98
VPS13A-207ENST00000419472 DMAC1Q96GE9 116 aa2.66□□□□□ -1.98
VPS13A-207ENST00000419472 HECTD4Q9Y4D8 3996 aa2.66□□□□□ -1.98
VPS13A-207ENST00000419472 NBDYA0A0U1RRE5 68 aa2.65□□□□□ -1.99
VPS13A-207ENST00000419472 LCE3EQ5T5B0 92 aa2.65□□□□□ -1.99
VPS13A-207ENST00000419472 RNF213Q63HN8 5207 aa2.64□□□□□ -1.99
VPS13A-207ENST00000419472 LINC00304Q8N9R0 145 aa2.63□□□□□ -1.99
VPS13A-207ENST00000419472 A0A096LNI7 61 aa2.61□□□□□ -1.99
VPS13A-207ENST00000419472 DNAH11Q96DT5 4516 aa2.61□□□□□ -1.99
VPS13A-207ENST00000419472 DNAH17Q9UFH2 4485 aa2.61□□□□□ -1.99
VPS13A-207ENST00000419472 A0A087WTM6 91 aa2.6□□□□□ -1.99
VPS13A-207ENST00000419472 PRLHP81277 87 aa2.6□□□□□ -1.99
VPS13A-207ENST00000419472 Q6ZRN7 208 aaPredicted RBP2.59□□□□□ -1.99
VPS13A-207ENST00000419472 CRCT1Q9UGL9 99 aa2.59□□□□□ -1.99
VPS13A-207ENST00000419472 PKHD1P08F94 4074 aa2.59□□□□□ -2
VPS13A-207ENST00000419472 KRTAP13-3Q3SY46 172 aa2.58□□□□□ -2
VPS13A-207ENST00000419472 MRPL34Q9BQ48 92 aaKnown RBP2.57□□□□□ -2
VPS13A-207ENST00000419472 DNAH5Q8TE73 4624 aa2.57□□□□□ -2
VPS13A-207ENST00000419472 DNAH8Q96JB1 4490 aa2.57□□□□□ -2
VPS13A-207ENST00000419472 Q96NJ1 140 aa2.57□□□□□ -2
VPS13A-207ENST00000419472 FAT2Q9NYQ8 4349 aa2.56□□□□□ -2
VPS13A-207ENST00000419472 FAT4Q6V0I7 4981 aa2.56□□□□□ -2
VPS13A-207ENST00000419472 LRP1BQ9NZR2 4599 aa2.55□□□□□ -2
VPS13A-207ENST00000419472 SPRR1BP22528 89 aa2.55□□□□□ -2
VPS13A-207ENST00000419472 H0YAA0 97 aa2.54□□□□□ -2
VPS13A-207ENST00000419472 PKD1P98161 4303 aa2.53□□□□□ -2
VPS13A-207ENST00000419472 SSBP3-AS1Q7Z2R9 100 aa2.53□□□□□ -2
VPS13A-207ENST00000419472 VPS13BQ7Z7G8 4022 aa2.53□□□□□ -2
VPS13A-207ENST00000419472 Q6ZSA8 131 aa2.53□□□□□ -2
VPS13A-207ENST00000419472 CRIPTQ9P021 101 aa2.53□□□□□ -2
VPS13A-207ENST00000419472 FAT1Q14517 4588 aa2.51□□□□□ -2.01
VPS13A-207ENST00000419472 DYNC1H1Q14204 4646 aaKnown RBP2.51□□□□□ -2.01
VPS13A-207ENST00000419472 KRTAP10-8P60410 259 aa2.5□□□□□ -2.01
VPS13A-207ENST00000419472 KRTAP10-1P60331 282 aa2.49□□□□□ -2.01
VPS13A-207ENST00000419472 KRTAP12-2P59991 146 aa2.49□□□□□ -2.01
VPS13A-207ENST00000419472 HMCN2Q8NDA2 5059 aa2.48□□□□□ -2.01
VPS13A-207ENST00000419472 SPRR5A0A1B0GTR4 108 aa2.47□□□□□ -2.01
VPS13A-207ENST00000419472 Q5VSD8 79 aa2.47□□□□□ -2.01
VPS13A-207ENST00000419472 SMR3BP02814 79 aaPredicted RBP2.46□□□□□ -2.02
VPS13A-207ENST00000419472 KRTAP13-1Q8IUC0 172 aa2.46□□□□□ -2.02
VPS13A-207ENST00000419472 H1FX-AS1Q4G0G2 97 aa2.45□□□□□ -2.02
VPS13A-207ENST00000419472 APOBP04114 4563 aaKnown RBP2.45□□□□□ -2.02
VPS13A-207ENST00000419472 KRTAP10-5P60370 271 aa2.45□□□□□ -2.02
VPS13A-207ENST00000419472 SPINK6Q6UWN8 80 aa2.44□□□□□ -2.02
VPS13A-207ENST00000419472 HSPG2P98160 4391 aa2.44□□□□□ -2.02
VPS13A-207ENST00000419472 KRTAP10-4P60372 401 aaPredicted RBP2.43□□□□□ -2.02
VPS13A-207ENST00000419472 LRP1Q07954 4544 aaKnown RBP2.42□□□□□ -2.02
VPS13A-207ENST00000419472 MUC5BQ9HC84 5762 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-207ENST00000419472 MYCBP2O75592 4640 aa2.42□□□□□ -2.02
VPS13A-207ENST00000419472 LCE1EQ5T753 118 aa2.4□□□□□ -2.02
VPS13A-207ENST00000419472 PKHD1L1Q86WI1 4243 aa2.4□□□□□ -2.02
VPS13A-207ENST00000419472 SPINK1P00995 79 aa2.4□□□□□ -2.03
VPS13A-207ENST00000419472 C10orf95Q9H7T3 257 aa2.4□□□□□ -2.03
VPS13A-207ENST00000419472 RPL37P61927 97 aaKnown RBP2.38□□□□□ -2.03
VPS13A-207ENST00000419472 COX6B2Q6YFQ2 88 aa2.37□□□□□ -2.03
VPS13A-207ENST00000419472 LCE3DQ9BYE3 92 aa2.36□□□□□ -2.03
VPS13A-207ENST00000419472 FAT3Q8TDW7 4589 aa2.36□□□□□ -2.03
VPS13A-207ENST00000419472 LRP2P98164 4655 aa2.36□□□□□ -2.03
VPS13A-207ENST00000419472 MT1HL1P0DM35 61 aa2.33□□□□□ -2.04
VPS13A-207ENST00000419472 KRTAP13-4Q3LI77 160 aa2.32□□□□□ -2.04
VPS13A-207ENST00000419472 C9orf92A6NGG3 77 aa2.31□□□□□ -2.04
VPS13A-207ENST00000419472 KRTAP10-7P60409 375 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-207ENST00000419472 SYNE2Q8WXH0 6885 aaKnown RBP2.3□□□□□ -2.04
VPS13A-207ENST00000419472 TNXBP22105 4242 aa2.3□□□□□ -2.04
VPS13A-207ENST00000419472 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.29□□□□□ -2.04
VPS13A-207ENST00000419472 PLAC4Q8WY50 150 aa2.29□□□□□ -2.04
VPS13A-207ENST00000419472 NEBP20929 6669 aa2.29□□□□□ -2.04
VPS13A-207ENST00000419472 S4R3F8 94 aa2.27□□□□□ -2.05
VPS13A-207ENST00000419472 LPAP08519 4548 aa2.26□□□□□ -2.05
VPS13A-207ENST00000419472 INE1O15225 51 aa2.26□□□□□ -2.05
VPS13A-207ENST00000419472 KRTAP12-1P59990 96 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms