RNA–Protein interactions for RNA: ENST00000409076.6

SNX13-201, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 3,818 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-201ENST00000409076 SACSQ9NZJ4 4579 aa4.35□□□□□ -1.71
SNX13-201ENST00000409076 RPL37P61927 97 aaKnown RBP4.33□□□□□ -1.72
SNX13-201ENST00000409076 APOBP04114 4563 aaKnown RBP4.33□□□□□ -1.72
SNX13-201ENST00000409076 KRTAP13-4Q3LI77 160 aa4.33□□□□□ -1.72
SNX13-201ENST00000409076 C20orf166-AS1Q96NR2 134 aa4.33□□□□□ -1.72
SNX13-201ENST00000409076 KMT2CQ8NEZ4 4911 aaKnown RBP4.3□□□□□ -1.72
SNX13-201ENST00000409076 PKD1P98161 4303 aa4.3□□□□□ -1.72
SNX13-201ENST00000409076 KIAA1109Q2LD37 5005 aa4.29□□□□□ -1.72
SNX13-201ENST00000409076 XP32Q5T750 250 aa4.26□□□□□ -1.73
SNX13-201ENST00000409076 RYR1P21817 5038 aa4.26□□□□□ -1.73
SNX13-201ENST00000409076 HSPG2P98160 4391 aa4.25□□□□□ -1.73
SNX13-201ENST00000409076 NDUFAF8A1L188 74 aa4.25□□□□□ -1.73
SNX13-201ENST00000409076 M0QZ58 72 aa4.24□□□□□ -1.73
SNX13-201ENST00000409076 LRP2P98164 4655 aa4.23□□□□□ -1.73
SNX13-201ENST00000409076 TPRXLQ17RH7 258 aa4.23□□□□□ -1.73
SNX13-201ENST00000409076 KRTAP12-2P59991 146 aa4.22□□□□□ -1.73
SNX13-201ENST00000409076 LPAP08519 4548 aa4.21□□□□□ -1.74
SNX13-201ENST00000409076 KRTAP10-6P60371 365 aaPredicted RBP4.2□□□□□ -1.74
SNX13-201ENST00000409076 R4GN34 69 aa4.2□□□□□ -1.74
SNX13-201ENST00000409076 A0A1B0GVY2 172 aa4.19□□□□□ -1.74
SNX13-201ENST00000409076 RYR3Q15413 4870 aa4.18□□□□□ -1.74
SNX13-201ENST00000409076 RPS29P62273 56 aaKnown RBP4.18□□□□□ -1.74
SNX13-201ENST00000409076 KRTAP3-3Q9BYR6 98 aa4.17□□□□□ -1.74
SNX13-201ENST00000409076 J3QL48 77 aa4.17□□□□□ -1.74
SNX13-201ENST00000409076 KRTAP10-4P60372 401 aaPredicted RBP4.17□□□□□ -1.74
SNX13-201ENST00000409076 KRTAP17-1Q9BYP8 105 aa4.13□□□□□ -1.75
SNX13-201ENST00000409076 KRTAP3-2Q9BYR7 98 aa4.13□□□□□ -1.75
SNX13-201ENST00000409076 CAMK2N1Q7Z7J9 78 aa4.12□□□□□ -1.75
SNX13-201ENST00000409076 PKHD1L1Q86WI1 4243 aa4.12□□□□□ -1.75
SNX13-201ENST00000409076 EPPK1P58107 5090 aaKnown RBP4.11□□□□□ -1.75
SNX13-201ENST00000409076 RYR2Q92736 4967 aa4.1□□□□□ -1.75
SNX13-201ENST00000409076 KRTAP4-5Q9BYR2 181 aa4.09□□□□□ -1.76
SNX13-201ENST00000409076 KRTAP12-1P59990 96 aa4.08□□□□□ -1.76
SNX13-201ENST00000409076 MUC2Q02817 5179 aa4.07□□□□□ -1.76
SNX13-201ENST00000409076 ABCA13Q86UQ4 5058 aa4.05□□□□□ -1.76
SNX13-201ENST00000409076 LORP23490 312 aaPredicted RBP4.04□□□□□ -1.76
SNX13-201ENST00000409076 MT1HL1P0DM35 61 aa4.01□□□□□ -1.77
SNX13-201ENST00000409076 KRTAP15-1Q3LI76 137 aa3.99□□□□□ -1.77
SNX13-201ENST00000409076 M0R2T5 61 aa3.97□□□□□ -1.77
SNX13-201ENST00000409076 TNXBP22105 4242 aa3.97□□□□□ -1.77
SNX13-201ENST00000409076 SEC61BP60468 96 aaKnown RBP3.93□□□□□ -1.78
SNX13-201ENST00000409076 PLAC4Q8WY50 150 aa3.91□□□□□ -1.78
SNX13-201ENST00000409076 LUZP6Q538Z0 58 aa3.9□□□□□ -1.78
SNX13-201ENST00000409076 KRTAP4-1Q9BYQ7 146 aa3.89□□□□□ -1.79
SNX13-201ENST00000409076 FAT4Q6V0I7 4981 aa3.87□□□□□ -1.79
SNX13-201ENST00000409076 A0A0A0MQY5 61 aa3.86□□□□□ -1.79
SNX13-201ENST00000409076 HERC2O95714 4834 aa3.85□□□□□ -1.79
SNX13-201ENST00000409076 RNF213Q63HN8 5207 aa3.85□□□□□ -1.79
SNX13-201ENST00000409076 HERC1Q15751 4861 aa3.79□□□□□ -1.8
SNX13-201ENST00000409076 KRTAP21-3Q3LHN1 58 aa3.78□□□□□ -1.8
SNX13-201ENST00000409076 TNP1P09430 55 aa3.73□□□□□ -1.81
SNX13-201ENST00000409076 HMCN2Q8NDA2 5059 aa3.68□□□□□ -1.82
SNX13-201ENST00000409076 KRTAP10-10P60014 251 aa3.68□□□□□ -1.82
SNX13-201ENST00000409076 LCE2DQ5TA82 110 aaPredicted RBP3.68□□□□□ -1.82
SNX13-201ENST00000409076 UBR4Q5T4S7 5183 aa3.68□□□□□ -1.82
SNX13-201ENST00000409076 PCLOQ9Y6V0 5065 aa3.66□□□□□ -1.82
SNX13-201ENST00000409076 MUC17Q685J3 4493 aa3.63□□□□□ -1.83
SNX13-201ENST00000409076 PP632Q6XCG6 107 aa3.57□□□□□ -1.84
SNX13-201ENST00000409076 FSIP2Q5CZC0 6907 aa3.54□□□□□ -1.84
SNX13-201ENST00000409076 LCE3AQ5TA76 89 aa3.54□□□□□ -1.84
SNX13-201ENST00000409076 USH2AO75445 5202 aa3.52□□□□□ -1.85
SNX13-201ENST00000409076 KMT2DO14686 5537 aa3.49□□□□□ -1.85
SNX13-201ENST00000409076 FLGP20930 4061 aaPredicted RBP3.48□□□□□ -1.85
SNX13-201ENST00000409076 BIRC6Q9NR09 4857 aa3.48□□□□□ -1.85
SNX13-201ENST00000409076 KRTAP19-2Q3LHN2 52 aa3.45□□□□□ -1.86
SNX13-201ENST00000409076 MT1FP04733 61 aa3.42□□□□□ -1.86
SNX13-201ENST00000409076 KRTAP19-1Q8IUB9 90 aa3.4□□□□□ -1.87
SNX13-201ENST00000409076 MT1HP80294 61 aa3.39□□□□□ -1.87
SNX13-201ENST00000409076 MT2AP02795 61 aa3.37□□□□□ -1.87
SNX13-201ENST00000409076 LCE2CQ5TA81 110 aa3.35□□□□□ -1.87
SNX13-201ENST00000409076 OBSCNQ5VST9 7968 aa3.34□□□□□ -1.87
SNX13-201ENST00000409076 KRTAP10-12P60413 245 aa3.33□□□□□ -1.88
SNX13-201ENST00000409076 KRTAP12-3P60328 96 aa3.32□□□□□ -1.88
SNX13-201ENST00000409076 KRTAP10-7P60409 375 aaPredicted RBP3.3□□□□□ -1.88
SNX13-201ENST00000409076 SPRR2GQ9BYE4 73 aa3.29□□□□□ -1.88
SNX13-201ENST00000409076 SPRR5A0A1B0GTR4 108 aa3.28□□□□□ -1.88
SNX13-201ENST00000409076 CRCT1Q9UGL9 99 aa3.26□□□□□ -1.89
SNX13-201ENST00000409076 DSTQ03001 7570 aaKnown RBP3.25□□□□□ -1.89
SNX13-201ENST00000409076 PRO2289Q9P1D8 64 aa3.23□□□□□ -1.89
SNX13-201ENST00000409076 KRTAP4-8A0A0G2JLE6 195 aa3.23□□□□□ -1.89
SNX13-201ENST00000409076 KRTAP9-8Q9BYQ0 159 aa3.23□□□□□ -1.89
SNX13-201ENST00000409076 KRTAP4-8Q9BYQ9 185 aa3.23□□□□□ -1.89
SNX13-201ENST00000409076 MT1XP80297 61 aa3.22□□□□□ -1.89
SNX13-201ENST00000409076 KRTAP10-5P60370 271 aa3.21□□□□□ -1.9
SNX13-201ENST00000409076 MT1BP07438 61 aa3.21□□□□□ -1.9
SNX13-201ENST00000409076 SYNE1Q8NF91 8797 aaKnown RBP3.2□□□□□ -1.9
SNX13-201ENST00000409076 KRTAP23-1A1A580 65 aa3.19□□□□□ -1.9
SNX13-201ENST00000409076 KRTAP19-5Q3LI72 72 aa3.19□□□□□ -1.9
SNX13-201ENST00000409076 KRTAP4-7Q9BYR0 210 aa3.19□□□□□ -1.9
SNX13-201ENST00000409076 FCGBPQ9Y6R7 5405 aaPredicted RBP3.18□□□□□ -1.9
SNX13-201ENST00000409076 KRTAP8-1Q8IUC2 63 aa3.13□□□□□ -1.91
SNX13-201ENST00000409076 INE1O15225 51 aa3.11□□□□□ -1.91
SNX13-201ENST00000409076 LCE2BO14633 110 aa3.07□□□□□ -1.92
SNX13-201ENST00000409076 KRTAP9-3Q9BYQ3 159 aa3.07□□□□□ -1.92
SNX13-201ENST00000409076 KRTAP19-8Q3LI54 63 aa3.06□□□□□ -1.92
SNX13-201ENST00000409076 MUC12Q9UKN1 5478 aa3.06□□□□□ -1.92
SNX13-201ENST00000409076 LCE3CQ5T5A8 94 aa3.02□□□□□ -1.93
SNX13-201ENST00000409076 KRTAP4-3Q9BYR4 195 aa2.97□□□□□ -1.93
SNX13-201ENST00000409076 KRTAP9-6A8MVA2 160 aa2.96□□□□□ -1.94
SNX13-201ENST00000409076 LOC100996750A0A140TA64 210 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms