RNA–Protein interactions for RNA: ENST00000399022.8

RPRD1A-202, Transcript of regulation of nuclear pre-mRNA domain containing 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPRD1A, Length 4,438 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1A-202ENST00000399022 VPS13DQ5THJ4 4388 aa7.09□□□□□ -1.27
RPRD1A-202ENST00000399022 KRTAP3-2Q9BYR7 98 aa7.07□□□□□ -1.28
RPRD1A-202ENST00000399022 KRTAP3-3Q9BYR6 98 aa7.02□□□□□ -1.28
RPRD1A-202ENST00000399022 MT1HL1P0DM35 61 aa7.01□□□□□ -1.29
RPRD1A-202ENST00000399022 DNAH17Q9UFH2 4485 aa7.01□□□□□ -1.29
RPRD1A-202ENST00000399022 FAT1Q14517 4588 aa7□□□□□ -1.29
RPRD1A-202ENST00000399022 KMT2AQ03164 3969 aa7□□□□□ -1.29
RPRD1A-202ENST00000399022 LRP1BQ9NZR2 4599 aa6.99□□□□□ -1.29
RPRD1A-202ENST00000399022 LYSTQ99698 3801 aa6.99□□□□□ -1.29
RPRD1A-202ENST00000399022 DNAH8Q96JB1 4490 aa6.96□□□□□ -1.3
RPRD1A-202ENST00000399022 DNAH2Q9P225 4427 aa6.91□□□□□ -1.3
RPRD1A-202ENST00000399022 KRTAP4-5Q9BYR2 181 aa6.89□□□□□ -1.31
RPRD1A-202ENST00000399022 DYNC1H1Q14204 4646 aaKnown RBP6.88□□□□□ -1.31
RPRD1A-202ENST00000399022 DNAH3Q8TD57 4116 aa6.87□□□□□ -1.31
RPRD1A-202ENST00000399022 CMYA5Q8N3K9 4069 aa6.86□□□□□ -1.31
RPRD1A-202ENST00000399022 ALMS1Q8TCU4 4167 aa6.83□□□□□ -1.32
RPRD1A-202ENST00000399022 DNAH7Q8WXX0 4024 aa6.81□□□□□ -1.32
RPRD1A-202ENST00000399022 KRTAP10-10P60014 251 aa6.79□□□□□ -1.32
RPRD1A-202ENST00000399022 FRAS1Q86XX4 4008 aa6.77□□□□□ -1.33
RPRD1A-202ENST00000399022 DYNC2H1Q8NCM8 4307 aaKnown RBP6.74□□□□□ -1.33
RPRD1A-202ENST00000399022 DNAH6Q9C0G6 4158 aa6.72□□□□□ -1.33
RPRD1A-202ENST00000399022 VPS13BQ7Z7G8 4022 aa6.71□□□□□ -1.33
RPRD1A-202ENST00000399022 MYCBP2O75592 4640 aa6.7□□□□□ -1.34
RPRD1A-202ENST00000399022 RYR1P21817 5038 aa6.66□□□□□ -1.34
RPRD1A-202ENST00000399022 SACSQ9NZJ4 4579 aa6.65□□□□□ -1.35
RPRD1A-202ENST00000399022 KIAA1109Q2LD37 5005 aa6.64□□□□□ -1.35
RPRD1A-202ENST00000399022 HECTD4Q9Y4D8 3996 aa6.63□□□□□ -1.35
RPRD1A-202ENST00000399022 FAT2Q9NYQ8 4349 aa6.59□□□□□ -1.35
RPRD1A-202ENST00000399022 HYDINQ4G0P3 5121 aa6.59□□□□□ -1.36
RPRD1A-202ENST00000399022 LRP1Q07954 4544 aaKnown RBP6.57□□□□□ -1.36
RPRD1A-202ENST00000399022 LORP23490 312 aaPredicted RBP6.53□□□□□ -1.36
RPRD1A-202ENST00000399022 APOBP04114 4563 aaKnown RBP6.52□□□□□ -1.37
RPRD1A-202ENST00000399022 FAT3Q8TDW7 4589 aa6.51□□□□□ -1.37
RPRD1A-202ENST00000399022 RYR3Q15413 4870 aa6.48□□□□□ -1.37
RPRD1A-202ENST00000399022 PKHD1P08F94 4074 aa6.47□□□□□ -1.37
RPRD1A-202ENST00000399022 KRTAP17-1Q9BYP8 105 aa6.45□□□□□ -1.38
RPRD1A-202ENST00000399022 PRO2289Q9P1D8 64 aa6.44□□□□□ -1.38
RPRD1A-202ENST00000399022 KRTAP4-1Q9BYQ7 146 aa6.42□□□□□ -1.38
RPRD1A-202ENST00000399022 INE1O15225 51 aa6.39□□□□□ -1.39
RPRD1A-202ENST00000399022 RYR2Q92736 4967 aa6.32□□□□□ -1.4
RPRD1A-202ENST00000399022 LRP2P98164 4655 aa6.26□□□□□ -1.41
RPRD1A-202ENST00000399022 KMT2CQ8NEZ4 4911 aaKnown RBP6.25□□□□□ -1.41
RPRD1A-202ENST00000399022 PKD1P98161 4303 aa6.23□□□□□ -1.41
RPRD1A-202ENST00000399022 KRTAP23-1A1A580 65 aa6.21□□□□□ -1.42
RPRD1A-202ENST00000399022 LCE3AQ5TA76 89 aa6.16□□□□□ -1.42
RPRD1A-202ENST00000399022 HSPG2P98160 4391 aa6.12□□□□□ -1.43
RPRD1A-202ENST00000399022 HERC2O95714 4834 aa6.09□□□□□ -1.43
RPRD1A-202ENST00000399022 KRTAP12-3P60328 96 aa6.06□□□□□ -1.44
RPRD1A-202ENST00000399022 KRTAP10-12P60413 245 aa6.04□□□□□ -1.44
RPRD1A-202ENST00000399022 LPAP08519 4548 aa6.02□□□□□ -1.45
RPRD1A-202ENST00000399022 MT1HP80294 61 aa5.96□□□□□ -1.46
RPRD1A-202ENST00000399022 MT2AP02795 61 aa5.91□□□□□ -1.46
RPRD1A-202ENST00000399022 EPPK1P58107 5090 aaKnown RBP5.89□□□□□ -1.47
RPRD1A-202ENST00000399022 PKHD1L1Q86WI1 4243 aa5.89□□□□□ -1.47
RPRD1A-202ENST00000399022 MT1FP04733 61 aa5.87□□□□□ -1.47
RPRD1A-202ENST00000399022 SPRR2GQ9BYE4 73 aa5.86□□□□□ -1.47
RPRD1A-202ENST00000399022 TNXBP22105 4242 aa5.84□□□□□ -1.47
RPRD1A-202ENST00000399022 ABCA13Q86UQ4 5058 aa5.77□□□□□ -1.49
RPRD1A-202ENST00000399022 KRTAP19-1Q8IUB9 90 aa5.75□□□□□ -1.49
RPRD1A-202ENST00000399022 SPRR5A0A1B0GTR4 108 aa5.74□□□□□ -1.49
RPRD1A-202ENST00000399022 BIRC6Q9NR09 4857 aa5.72□□□□□ -1.49
RPRD1A-202ENST00000399022 KRTAP8-1Q8IUC2 63 aa5.66□□□□□ -1.5
RPRD1A-202ENST00000399022 HERC1Q15751 4861 aa5.66□□□□□ -1.5
RPRD1A-202ENST00000399022 PCLOQ9Y6V0 5065 aa5.65□□□□□ -1.5
RPRD1A-202ENST00000399022 LCE2CQ5TA81 110 aa5.64□□□□□ -1.51
RPRD1A-202ENST00000399022 KRTAP19-2Q3LHN2 52 aa5.62□□□□□ -1.51
RPRD1A-202ENST00000399022 CRCT1Q9UGL9 99 aa5.62□□□□□ -1.51
RPRD1A-202ENST00000399022 MUC2Q02817 5179 aa5.57□□□□□ -1.52
RPRD1A-202ENST00000399022 MUC17Q685J3 4493 aa5.55□□□□□ -1.52
RPRD1A-202ENST00000399022 KRTAP9-8Q9BYQ0 159 aa5.54□□□□□ -1.52
RPRD1A-202ENST00000399022 KRTAP19-8Q3LI54 63 aa5.51□□□□□ -1.53
RPRD1A-202ENST00000399022 KRTAP10-7P60409 375 aaPredicted RBP5.5□□□□□ -1.53
RPRD1A-202ENST00000399022 MT1BP07438 61 aa5.47□□□□□ -1.53
RPRD1A-202ENST00000399022 MT1XP80297 61 aa5.46□□□□□ -1.53
RPRD1A-202ENST00000399022 KRTAP19-5Q3LI72 72 aa5.46□□□□□ -1.53
RPRD1A-202ENST00000399022 RNF213Q63HN8 5207 aa5.46□□□□□ -1.54
RPRD1A-202ENST00000399022 KRTAP10-5P60370 271 aa5.46□□□□□ -1.54
RPRD1A-202ENST00000399022 FAT4Q6V0I7 4981 aa5.44□□□□□ -1.54
RPRD1A-202ENST00000399022 FLGP20930 4061 aaPredicted RBP5.43□□□□□ -1.54
RPRD1A-202ENST00000399022 LCE3CQ5T5A8 94 aa5.43□□□□□ -1.54
RPRD1A-202ENST00000399022 UBR4Q5T4S7 5183 aa5.34□□□□□ -1.55
RPRD1A-202ENST00000399022 KRTAP9-3Q9BYQ3 159 aa5.33□□□□□ -1.56
RPRD1A-202ENST00000399022 KRTAP4-8A0A0G2JLE6 195 aa5.28□□□□□ -1.56
RPRD1A-202ENST00000399022 KRTAP4-8Q9BYQ9 185 aa5.28□□□□□ -1.56
RPRD1A-202ENST00000399022 HMCN2Q8NDA2 5059 aa5.26□□□□□ -1.57
RPRD1A-202ENST00000399022 FSIP2Q5CZC0 6907 aa5.23□□□□□ -1.57
RPRD1A-202ENST00000399022 LCE2BO14633 110 aa5.18□□□□□ -1.58
RPRD1A-202ENST00000399022 SPRR2FQ96RM1 72 aa5.1□□□□□ -1.59
RPRD1A-202ENST00000399022 KRTAP12-4P60329 112 aa5.06□□□□□ -1.6
RPRD1A-202ENST00000399022 KRTAP4-7Q9BYR0 210 aa5.02□□□□□ -1.61
RPRD1A-202ENST00000399022 KRTAP19-4Q3LI73 84 aa4.93□□□□□ -1.62
RPRD1A-202ENST00000399022 SYNE1Q8NF91 8797 aaKnown RBP4.92□□□□□ -1.62
RPRD1A-202ENST00000399022 MT1GP13640 62 aa4.92□□□□□ -1.62
RPRD1A-202ENST00000399022 LCE2AQ5TA79 106 aaPredicted RBP4.85□□□□□ -1.63
RPRD1A-202ENST00000399022 LCE3BQ5TA77 95 aa4.84□□□□□ -1.63
RPRD1A-202ENST00000399022 MT1LQ93083 61 aa4.83□□□□□ -1.64
RPRD1A-202ENST00000399022 USH2AO75445 5202 aa4.83□□□□□ -1.64
RPRD1A-202ENST00000399022 MT1EP04732 61 aa4.81□□□□□ -1.64
RPRD1A-202ENST00000399022 KRTAP19-7Q3SYF9 63 aa4.74□□□□□ -1.65
RPRD1A-202ENST00000399022 KMT2DO14686 5537 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms