RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 VPS13BQ7Z7G8 4022 aa5.73□□□□□ -1.49
CCDC40-204ENST00000397545 FAT2Q9NYQ8 4349 aa5.72□□□□□ -1.49
CCDC40-204ENST00000397545 PKHD1P08F94 4074 aa5.69□□□□□ -1.5
CCDC40-204ENST00000397545 PKD1P98161 4303 aa5.68□□□□□ -1.5
CCDC40-204ENST00000397545 KRTAP13-3Q3SY46 172 aa5.68□□□□□ -1.5
CCDC40-204ENST00000397545 FAT1Q14517 4588 aa5.67□□□□□ -1.5
CCDC40-204ENST00000397545 SACSQ9NZJ4 4579 aa5.66□□□□□ -1.5
CCDC40-204ENST00000397545 DYNC1H1Q14204 4646 aaKnown RBP5.65□□□□□ -1.5
CCDC40-204ENST00000397545 PLAC4Q8WY50 150 aa5.64□□□□□ -1.51
CCDC40-204ENST00000397545 XP32Q5T750 250 aa5.63□□□□□ -1.51
CCDC40-204ENST00000397545 P0C880 135 aa5.6□□□□□ -1.51
CCDC40-204ENST00000397545 A0A1B0GVY2 172 aa5.59□□□□□ -1.51
CCDC40-204ENST00000397545 KMT2CQ8NEZ4 4911 aaKnown RBP5.51□□□□□ -1.53
CCDC40-204ENST00000397545 APOBP04114 4563 aaKnown RBP5.5□□□□□ -1.53
CCDC40-204ENST00000397545 TNP1P09430 55 aa5.49□□□□□ -1.53
CCDC40-204ENST00000397545 KRTAP10-4P60372 401 aaPredicted RBP5.49□□□□□ -1.53
CCDC40-204ENST00000397545 KRTAP10-8P60410 259 aa5.48□□□□□ -1.53
CCDC40-204ENST00000397545 RYR2Q92736 4967 aa5.48□□□□□ -1.53
CCDC40-204ENST00000397545 LRP1Q07954 4544 aaKnown RBP5.43□□□□□ -1.54
CCDC40-204ENST00000397545 KRTAP3-1Q9BYR8 98 aa5.41□□□□□ -1.54
CCDC40-204ENST00000397545 KRTAP4-5Q9BYR2 181 aa5.4□□□□□ -1.55
CCDC40-204ENST00000397545 MYCBP2O75592 4640 aa5.37□□□□□ -1.55
CCDC40-204ENST00000397545 TPRXLQ17RH7 258 aa5.37□□□□□ -1.55
CCDC40-204ENST00000397545 KRTAP12-2P59991 146 aa5.37□□□□□ -1.55
CCDC40-204ENST00000397545 KIAA1109Q2LD37 5005 aa5.33□□□□□ -1.56
CCDC40-204ENST00000397545 PP632Q6XCG6 107 aa5.33□□□□□ -1.56
CCDC40-204ENST00000397545 PKHD1L1Q86WI1 4243 aa5.32□□□□□ -1.56
CCDC40-204ENST00000397545 RYR3Q15413 4870 aa5.31□□□□□ -1.56
CCDC40-204ENST00000397545 HSPG2P98160 4391 aa5.3□□□□□ -1.56
CCDC40-204ENST00000397545 KRTAP17-1Q9BYP8 105 aa5.3□□□□□ -1.56
CCDC40-204ENST00000397545 KRTAP13-4Q3LI77 160 aa5.28□□□□□ -1.56
CCDC40-204ENST00000397545 KRTAP12-1P59990 96 aa5.27□□□□□ -1.57
CCDC40-204ENST00000397545 FAT3Q8TDW7 4589 aa5.27□□□□□ -1.57
CCDC40-204ENST00000397545 RYR1P21817 5038 aa5.27□□□□□ -1.57
CCDC40-204ENST00000397545 KRTAP10-10P60014 251 aa5.23□□□□□ -1.57
CCDC40-204ENST00000397545 TNXBP22105 4242 aa5.23□□□□□ -1.57
CCDC40-204ENST00000397545 KRTAP10-6P60371 365 aaPredicted RBP5.23□□□□□ -1.57
CCDC40-204ENST00000397545 MT1HL1P0DM35 61 aa5.21□□□□□ -1.58
CCDC40-204ENST00000397545 EPPK1P58107 5090 aaKnown RBP5.16□□□□□ -1.58
CCDC40-204ENST00000397545 LRP2P98164 4655 aa5.1□□□□□ -1.59
CCDC40-204ENST00000397545 KRTAP3-3Q9BYR6 98 aa5.09□□□□□ -1.59
CCDC40-204ENST00000397545 LPAP08519 4548 aa5.06□□□□□ -1.6
CCDC40-204ENST00000397545 KRTAP3-2Q9BYR7 98 aa5.06□□□□□ -1.6
CCDC40-204ENST00000397545 ABCA13Q86UQ4 5058 aa5.02□□□□□ -1.61
CCDC40-204ENST00000397545 PRO2289Q9P1D8 64 aa4.95□□□□□ -1.62
CCDC40-204ENST00000397545 HERC2O95714 4834 aa4.93□□□□□ -1.62
CCDC40-204ENST00000397545 KRTAP15-1Q3LI76 137 aa4.91□□□□□ -1.62
CCDC40-204ENST00000397545 KRTAP4-1Q9BYQ7 146 aa4.86□□□□□ -1.63
CCDC40-204ENST00000397545 LORP23490 312 aaPredicted RBP4.81□□□□□ -1.64
CCDC40-204ENST00000397545 PCLOQ9Y6V0 5065 aa4.8□□□□□ -1.64
CCDC40-204ENST00000397545 MUC2Q02817 5179 aa4.77□□□□□ -1.65
CCDC40-204ENST00000397545 BIRC6Q9NR09 4857 aa4.74□□□□□ -1.65
CCDC40-204ENST00000397545 MUC17Q685J3 4493 aa4.71□□□□□ -1.66
CCDC40-204ENST00000397545 HERC1Q15751 4861 aa4.7□□□□□ -1.66
CCDC40-204ENST00000397545 FSIP2Q5CZC0 6907 aa4.61□□□□□ -1.67
CCDC40-204ENST00000397545 KRTAP10-12P60413 245 aa4.6□□□□□ -1.67
CCDC40-204ENST00000397545 KRTAP19-2Q3LHN2 52 aa4.59□□□□□ -1.67
CCDC40-204ENST00000397545 LCE3AQ5TA76 89 aa4.58□□□□□ -1.68
CCDC40-204ENST00000397545 FAT4Q6V0I7 4981 aa4.56□□□□□ -1.68
CCDC40-204ENST00000397545 KRTAP12-3P60328 96 aa4.55□□□□□ -1.68
CCDC40-204ENST00000397545 HMCN2Q8NDA2 5059 aa4.55□□□□□ -1.68
CCDC40-204ENST00000397545 RNF213Q63HN8 5207 aa4.53□□□□□ -1.68
CCDC40-204ENST00000397545 FLGP20930 4061 aaPredicted RBP4.53□□□□□ -1.68
CCDC40-204ENST00000397545 CRCT1Q9UGL9 99 aa4.51□□□□□ -1.69
CCDC40-204ENST00000397545 UBR4Q5T4S7 5183 aa4.48□□□□□ -1.69
CCDC40-204ENST00000397545 INE1O15225 51 aa4.46□□□□□ -1.7
CCDC40-204ENST00000397545 LCE2CQ5TA81 110 aa4.42□□□□□ -1.7
CCDC40-204ENST00000397545 KRTAP23-1A1A580 65 aa4.41□□□□□ -1.7
CCDC40-204ENST00000397545 MT1HP80294 61 aa4.41□□□□□ -1.7
CCDC40-204ENST00000397545 MT1FP04733 61 aa4.31□□□□□ -1.72
CCDC40-204ENST00000397545 MT2AP02795 61 aa4.3□□□□□ -1.72
CCDC40-204ENST00000397545 KRTAP19-1Q8IUB9 90 aa4.3□□□□□ -1.72
CCDC40-204ENST00000397545 SPRR2GQ9BYE4 73 aa4.27□□□□□ -1.73
CCDC40-204ENST00000397545 KRTAP9-8Q9BYQ0 159 aa4.22□□□□□ -1.73
CCDC40-204ENST00000397545 KRTAP10-5P60370 271 aa4.19□□□□□ -1.74
CCDC40-204ENST00000397545 KRTAP8-1Q8IUC2 63 aa4.13□□□□□ -1.75
CCDC40-204ENST00000397545 KRTAP19-5Q3LI72 72 aa4.1□□□□□ -1.75
CCDC40-204ENST00000397545 MT1BP07438 61 aa4.09□□□□□ -1.75
CCDC40-204ENST00000397545 KRTAP19-8Q3LI54 63 aa4.08□□□□□ -1.76
CCDC40-204ENST00000397545 MT1XP80297 61 aa4.05□□□□□ -1.76
CCDC40-204ENST00000397545 KRTAP9-3Q9BYQ3 159 aa4.04□□□□□ -1.76
CCDC40-204ENST00000397545 KRTAP10-7P60409 375 aaPredicted RBP4.03□□□□□ -1.76
CCDC40-204ENST00000397545 USH2AO75445 5202 aa4.02□□□□□ -1.77
CCDC40-204ENST00000397545 LCE3CQ5T5A8 94 aa4□□□□□ -1.77
CCDC40-204ENST00000397545 SYNE1Q8NF91 8797 aaKnown RBP3.98□□□□□ -1.77
CCDC40-204ENST00000397545 SPRR2FQ96RM1 72 aa3.95□□□□□ -1.78
CCDC40-204ENST00000397545 LCE2BO14633 110 aa3.95□□□□□ -1.78
CCDC40-204ENST00000397545 OBSCNQ5VST9 7968 aa3.91□□□□□ -1.78
CCDC40-204ENST00000397545 KMT2DO14686 5537 aa3.9□□□□□ -1.79
CCDC40-204ENST00000397545 KRTAP4-8A0A0G2JLE6 195 aa3.88□□□□□ -1.79
CCDC40-204ENST00000397545 KRTAP4-8Q9BYQ9 185 aa3.88□□□□□ -1.79
CCDC40-204ENST00000397545 SPRR5A0A1B0GTR4 108 aa3.86□□□□□ -1.79
CCDC40-204ENST00000397545 LCE2AQ5TA79 106 aaPredicted RBP3.85□□□□□ -1.79
CCDC40-204ENST00000397545 KRTAP9-2Q9BYQ4 174 aa3.85□□□□□ -1.79
CCDC40-204ENST00000397545 KRTAP19-4Q3LI73 84 aa3.75□□□□□ -1.81
CCDC40-204ENST00000397545 MT1GP13640 62 aa3.73□□□□□ -1.81
CCDC40-204ENST00000397545 KRTAP4-7Q9BYR0 210 aa3.73□□□□□ -1.81
CCDC40-204ENST00000397545 SYNE2Q8WXH0 6885 aaKnown RBP3.72□□□□□ -1.81
CCDC40-204ENST00000397545 LCE3BQ5TA77 95 aa3.71□□□□□ -1.82
CCDC40-204ENST00000397545 DSTQ03001 7570 aaKnown RBP3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms