RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 MT1HL1P0DM35 61 aa7.2□□□□□ -1.26
SHROOM1-203ENST00000378679 DNAH17Q9UFH2 4485 aa7.19□□□□□ -1.26
SHROOM1-203ENST00000378679 PLAC4Q8WY50 150 aa7.18□□□□□ -1.26
SHROOM1-203ENST00000378679 FAT1Q14517 4588 aa7.17□□□□□ -1.26
SHROOM1-203ENST00000378679 DNAH2Q9P225 4427 aa7.17□□□□□ -1.26
SHROOM1-203ENST00000378679 P0C880 135 aa7.13□□□□□ -1.27
SHROOM1-203ENST00000378679 KRTAP4-5Q9BYR2 181 aa7.12□□□□□ -1.27
SHROOM1-203ENST00000378679 KRTAP3-1Q9BYR8 98 aa7.11□□□□□ -1.27
SHROOM1-203ENST00000378679 HECTD4Q9Y4D8 3996 aa7.09□□□□□ -1.27
SHROOM1-203ENST00000378679 HYDINQ4G0P3 5121 aa7.05□□□□□ -1.28
SHROOM1-203ENST00000378679 ALMS1Q8TCU4 4167 aa7.04□□□□□ -1.28
SHROOM1-203ENST00000378679 VPS13BQ7Z7G8 4022 aa7.01□□□□□ -1.29
SHROOM1-203ENST00000378679 DYNC1H1Q14204 4646 aaKnown RBP7.01□□□□□ -1.29
SHROOM1-203ENST00000378679 MYCBP2O75592 4640 aa7□□□□□ -1.29
SHROOM1-203ENST00000378679 PKHD1P08F94 4074 aa6.99□□□□□ -1.29
SHROOM1-203ENST00000378679 DYNC2H1Q8NCM8 4307 aaKnown RBP6.95□□□□□ -1.3
SHROOM1-203ENST00000378679 KRTAP10-10P60014 251 aa6.93□□□□□ -1.3
SHROOM1-203ENST00000378679 KIAA1109Q2LD37 5005 aa6.88□□□□□ -1.31
SHROOM1-203ENST00000378679 KRTAP12-2P59991 146 aa6.87□□□□□ -1.31
SHROOM1-203ENST00000378679 KRTAP13-4Q3LI77 160 aa6.87□□□□□ -1.31
SHROOM1-203ENST00000378679 TNP1P09430 55 aa6.85□□□□□ -1.31
SHROOM1-203ENST00000378679 RYR1P21817 5038 aa6.85□□□□□ -1.31
SHROOM1-203ENST00000378679 LRP1Q07954 4544 aaKnown RBP6.85□□□□□ -1.31
SHROOM1-203ENST00000378679 FAT3Q8TDW7 4589 aa6.84□□□□□ -1.31
SHROOM1-203ENST00000378679 FAT2Q9NYQ8 4349 aa6.81□□□□□ -1.32
SHROOM1-203ENST00000378679 KRTAP10-6P60371 365 aaPredicted RBP6.77□□□□□ -1.33
SHROOM1-203ENST00000378679 RYR3Q15413 4870 aa6.75□□□□□ -1.33
SHROOM1-203ENST00000378679 APOBP04114 4563 aaKnown RBP6.74□□□□□ -1.33
SHROOM1-203ENST00000378679 KMT2CQ8NEZ4 4911 aaKnown RBP6.74□□□□□ -1.33
SHROOM1-203ENST00000378679 SACSQ9NZJ4 4579 aa6.72□□□□□ -1.33
SHROOM1-203ENST00000378679 KRTAP3-3Q9BYR6 98 aa6.72□□□□□ -1.33
SHROOM1-203ENST00000378679 KRTAP12-1P59990 96 aa6.7□□□□□ -1.34
SHROOM1-203ENST00000378679 PKD1P98161 4303 aa6.64□□□□□ -1.35
SHROOM1-203ENST00000378679 KRTAP3-2Q9BYR7 98 aa6.62□□□□□ -1.35
SHROOM1-203ENST00000378679 PP632Q6XCG6 107 aa6.61□□□□□ -1.35
SHROOM1-203ENST00000378679 RYR2Q92736 4967 aa6.57□□□□□ -1.36
SHROOM1-203ENST00000378679 KRTAP17-1Q9BYP8 105 aa6.56□□□□□ -1.36
SHROOM1-203ENST00000378679 PRO2289Q9P1D8 64 aa6.52□□□□□ -1.37
SHROOM1-203ENST00000378679 KRTAP15-1Q3LI76 137 aa6.5□□□□□ -1.37
SHROOM1-203ENST00000378679 LRP2P98164 4655 aa6.49□□□□□ -1.37
SHROOM1-203ENST00000378679 KRTAP4-1Q9BYQ7 146 aa6.46□□□□□ -1.38
SHROOM1-203ENST00000378679 HSPG2P98160 4391 aa6.43□□□□□ -1.38
SHROOM1-203ENST00000378679 HERC2O95714 4834 aa6.41□□□□□ -1.38
SHROOM1-203ENST00000378679 LPAP08519 4548 aa6.36□□□□□ -1.39
SHROOM1-203ENST00000378679 LORP23490 312 aaPredicted RBP6.35□□□□□ -1.39
SHROOM1-203ENST00000378679 EPPK1P58107 5090 aaKnown RBP6.28□□□□□ -1.4
SHROOM1-203ENST00000378679 PKHD1L1Q86WI1 4243 aa6.27□□□□□ -1.4
SHROOM1-203ENST00000378679 BIRC6Q9NR09 4857 aa6.21□□□□□ -1.42
SHROOM1-203ENST00000378679 MUC2Q02817 5179 aa6.2□□□□□ -1.42
SHROOM1-203ENST00000378679 ABCA13Q86UQ4 5058 aa6.18□□□□□ -1.42
SHROOM1-203ENST00000378679 MT1HP80294 61 aa6.12□□□□□ -1.43
SHROOM1-203ENST00000378679 TNXBP22105 4242 aa6.12□□□□□ -1.43
SHROOM1-203ENST00000378679 MT2AP02795 61 aa6.02□□□□□ -1.45
SHROOM1-203ENST00000378679 KRTAP10-12P60413 245 aa5.99□□□□□ -1.45
SHROOM1-203ENST00000378679 PCLOQ9Y6V0 5065 aa5.96□□□□□ -1.46
SHROOM1-203ENST00000378679 MT1FP04733 61 aa5.94□□□□□ -1.46
SHROOM1-203ENST00000378679 RNF213Q63HN8 5207 aa5.93□□□□□ -1.46
SHROOM1-203ENST00000378679 HERC1Q15751 4861 aa5.93□□□□□ -1.46
SHROOM1-203ENST00000378679 SPRR2GQ9BYE4 73 aa5.91□□□□□ -1.46
SHROOM1-203ENST00000378679 FAT4Q6V0I7 4981 aa5.9□□□□□ -1.47
SHROOM1-203ENST00000378679 LCE3AQ5TA76 89 aa5.86□□□□□ -1.47
SHROOM1-203ENST00000378679 KRTAP12-3P60328 96 aa5.82□□□□□ -1.48
SHROOM1-203ENST00000378679 KRTAP23-1A1A580 65 aa5.78□□□□□ -1.48
SHROOM1-203ENST00000378679 LCE2CQ5TA81 110 aa5.77□□□□□ -1.49
SHROOM1-203ENST00000378679 KRTAP19-1Q8IUB9 90 aa5.75□□□□□ -1.49
SHROOM1-203ENST00000378679 UBR4Q5T4S7 5183 aa5.71□□□□□ -1.5
SHROOM1-203ENST00000378679 KRTAP19-2Q3LHN2 52 aa5.66□□□□□ -1.5
SHROOM1-203ENST00000378679 KRTAP9-8Q9BYQ0 159 aa5.66□□□□□ -1.5
SHROOM1-203ENST00000378679 MUC17Q685J3 4493 aa5.61□□□□□ -1.51
SHROOM1-203ENST00000378679 KRTAP19-8Q3LI54 63 aa5.6□□□□□ -1.51
SHROOM1-203ENST00000378679 KRTAP8-1Q8IUC2 63 aa5.57□□□□□ -1.52
SHROOM1-203ENST00000378679 INE1O15225 51 aa5.56□□□□□ -1.52
SHROOM1-203ENST00000378679 HMCN2Q8NDA2 5059 aa5.53□□□□□ -1.52
SHROOM1-203ENST00000378679 CRCT1Q9UGL9 99 aa5.52□□□□□ -1.53
SHROOM1-203ENST00000378679 MT1BP07438 61 aa5.51□□□□□ -1.53
SHROOM1-203ENST00000378679 FSIP2Q5CZC0 6907 aa5.51□□□□□ -1.53
SHROOM1-203ENST00000378679 FLGP20930 4061 aaPredicted RBP5.5□□□□□ -1.53
SHROOM1-203ENST00000378679 KRTAP9-3Q9BYQ3 159 aa5.47□□□□□ -1.53
SHROOM1-203ENST00000378679 MT1XP80297 61 aa5.44□□□□□ -1.54
SHROOM1-203ENST00000378679 KRTAP10-7P60409 375 aaPredicted RBP5.43□□□□□ -1.54
SHROOM1-203ENST00000378679 KRTAP10-5P60370 271 aa5.4□□□□□ -1.55
SHROOM1-203ENST00000378679 LCE2DQ5TA82 110 aaPredicted RBP5.39□□□□□ -1.55
SHROOM1-203ENST00000378679 KRTAP19-5Q3LI72 72 aa5.39□□□□□ -1.55
SHROOM1-203ENST00000378679 USH2AO75445 5202 aa5.31□□□□□ -1.56
SHROOM1-203ENST00000378679 LCE2BO14633 110 aa5.31□□□□□ -1.56
SHROOM1-203ENST00000378679 SPRR2FQ96RM1 72 aa5.28□□□□□ -1.56
SHROOM1-203ENST00000378679 KRTAP4-8A0A0G2JLE6 195 aa5.23□□□□□ -1.57
SHROOM1-203ENST00000378679 KRTAP4-8Q9BYQ9 185 aa5.23□□□□□ -1.57
SHROOM1-203ENST00000378679 LCE2AQ5TA79 106 aaPredicted RBP5.19□□□□□ -1.58
SHROOM1-203ENST00000378679 LCE3CQ5T5A8 94 aa5.18□□□□□ -1.58
SHROOM1-203ENST00000378679 KMT2DO14686 5537 aa5.16□□□□□ -1.58
SHROOM1-203ENST00000378679 OBSCNQ5VST9 7968 aa5.15□□□□□ -1.59
SHROOM1-203ENST00000378679 SPRR5A0A1B0GTR4 108 aa5.13□□□□□ -1.59
SHROOM1-203ENST00000378679 SYNE1Q8NF91 8797 aaKnown RBP5.07□□□□□ -1.6
SHROOM1-203ENST00000378679 KRTAP19-4Q3LI73 84 aa5.02□□□□□ -1.61
SHROOM1-203ENST00000378679 DSTQ03001 7570 aaKnown RBP4.94□□□□□ -1.62
SHROOM1-203ENST00000378679 KRTAP19-6Q3LI70 58 aa4.92□□□□□ -1.62
SHROOM1-203ENST00000378679 SPRR2EP22531 72 aa4.89□□□□□ -1.63
SHROOM1-203ENST00000378679 SPRR2BP35325 72 aa4.89□□□□□ -1.63
SHROOM1-203ENST00000378679 SPRR2AP35326 72 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 209.7 ms