RNA–Protein interactions for RNA: ENST00000377298.8

CLSTN1-202, Transcript of calsyntenin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN1, Length 5,221 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-202ENST00000377298 DNAH11Q96DT5 4516 aa7.73□□□□□ -1.17
CLSTN1-202ENST00000377298 CRCT1Q9UGL9 99 aa7.73□□□□□ -1.17
CLSTN1-202ENST00000377298 PLECQ15149 4684 aaKnown RBP7.71□□□□□ -1.17
CLSTN1-202ENST00000377298 DNAH1Q9P2D7 4330 aa7.71□□□□□ -1.18
CLSTN1-202ENST00000377298 DNAH10Q8IVF4 4471 aa7.71□□□□□ -1.18
CLSTN1-202ENST00000377298 CSMD3Q7Z407 3707 aa7.69□□□□□ -1.18
CLSTN1-202ENST00000377298 LORP23490 312 aaPredicted RBP7.65□□□□□ -1.19
CLSTN1-202ENST00000377298 KRTAP23-1A1A580 65 aa7.64□□□□□ -1.19
CLSTN1-202ENST00000377298 KRTAP12-3P60328 96 aa7.61□□□□□ -1.19
CLSTN1-202ENST00000377298 VPS13DQ5THJ4 4388 aa7.61□□□□□ -1.19
CLSTN1-202ENST00000377298 KRTAP4-1Q9BYQ7 146 aa7.56□□□□□ -1.2
CLSTN1-202ENST00000377298 DNAH17Q9UFH2 4485 aa7.56□□□□□ -1.2
CLSTN1-202ENST00000377298 DYNC1H1Q14204 4646 aaKnown RBP7.55□□□□□ -1.2
CLSTN1-202ENST00000377298 LCE3AQ5TA76 89 aa7.51□□□□□ -1.21
CLSTN1-202ENST00000377298 INE1O15225 51 aa7.49□□□□□ -1.21
CLSTN1-202ENST00000377298 MT1HP80294 61 aa7.47□□□□□ -1.21
CLSTN1-202ENST00000377298 DNAH2Q9P225 4427 aa7.46□□□□□ -1.22
CLSTN1-202ENST00000377298 LRP1BQ9NZR2 4599 aa7.45□□□□□ -1.22
CLSTN1-202ENST00000377298 KRTAP8-1Q8IUC2 63 aa7.45□□□□□ -1.22
CLSTN1-202ENST00000377298 STARD9Q9P2P6 4700 aa7.39□□□□□ -1.23
CLSTN1-202ENST00000377298 FAT1Q14517 4588 aa7.36□□□□□ -1.23
CLSTN1-202ENST00000377298 RYR1P21817 5038 aa7.36□□□□□ -1.23
CLSTN1-202ENST00000377298 MT2AP02795 61 aa7.34□□□□□ -1.23
CLSTN1-202ENST00000377298 FAT2Q9NYQ8 4349 aa7.32□□□□□ -1.24
CLSTN1-202ENST00000377298 DYNC2H1Q8NCM8 4307 aaKnown RBP7.31□□□□□ -1.24
CLSTN1-202ENST00000377298 SACSQ9NZJ4 4579 aa7.29□□□□□ -1.24
CLSTN1-202ENST00000377298 SPRR2GQ9BYE4 73 aa7.28□□□□□ -1.24
CLSTN1-202ENST00000377298 DNAH3Q8TD57 4116 aa7.23□□□□□ -1.25
CLSTN1-202ENST00000377298 PRKDCP78527 4128 aaKnown RBP7.22□□□□□ -1.25
CLSTN1-202ENST00000377298 ANK2Q01484 3957 aa7.2□□□□□ -1.26
CLSTN1-202ENST00000377298 MT1FP04733 61 aa7.18□□□□□ -1.26
CLSTN1-202ENST00000377298 DNAH8Q96JB1 4490 aa7.15□□□□□ -1.27
CLSTN1-202ENST00000377298 APOBP04114 4563 aaKnown RBP7.07□□□□□ -1.28
CLSTN1-202ENST00000377298 RYR3Q15413 4870 aa7.06□□□□□ -1.28
CLSTN1-202ENST00000377298 KIAA1109Q2LD37 5005 aa7.05□□□□□ -1.28
CLSTN1-202ENST00000377298 KRTAP10-5P60370 271 aa7.03□□□□□ -1.28
CLSTN1-202ENST00000377298 KRTAP17-1Q9BYP8 105 aa7.03□□□□□ -1.28
CLSTN1-202ENST00000377298 KMT2AQ03164 3969 aa6.99□□□□□ -1.29
CLSTN1-202ENST00000377298 SPRR2FQ96RM1 72 aa6.97□□□□□ -1.29
CLSTN1-202ENST00000377298 DNAH6Q9C0G6 4158 aa6.94□□□□□ -1.3
CLSTN1-202ENST00000377298 RYR2Q92736 4967 aa6.93□□□□□ -1.3
CLSTN1-202ENST00000377298 VPS13BQ7Z7G8 4022 aa6.93□□□□□ -1.3
CLSTN1-202ENST00000377298 LYSTQ99698 3801 aa6.86□□□□□ -1.31
CLSTN1-202ENST00000377298 KRTAP10-7P60409 375 aaPredicted RBP6.86□□□□□ -1.31
CLSTN1-202ENST00000377298 FAT3Q8TDW7 4589 aa6.84□□□□□ -1.31
CLSTN1-202ENST00000377298 KRTAP19-8Q3LI54 63 aa6.83□□□□□ -1.32
CLSTN1-202ENST00000377298 KRTAP19-5Q3LI72 72 aa6.83□□□□□ -1.32
CLSTN1-202ENST00000377298 KRTAP19-1Q8IUB9 90 aa6.79□□□□□ -1.32
CLSTN1-202ENST00000377298 MYCBP2O75592 4640 aa6.77□□□□□ -1.33
CLSTN1-202ENST00000377298 KRTAP19-4Q3LI73 84 aa6.76□□□□□ -1.33
CLSTN1-202ENST00000377298 CMYA5Q8N3K9 4069 aa6.75□□□□□ -1.33
CLSTN1-202ENST00000377298 DNAH7Q8WXX0 4024 aa6.75□□□□□ -1.33
CLSTN1-202ENST00000377298 BIRC6Q9NR09 4857 aa6.72□□□□□ -1.33
CLSTN1-202ENST00000377298 FRAS1Q86XX4 4008 aa6.71□□□□□ -1.33
CLSTN1-202ENST00000377298 LRP1Q07954 4544 aaKnown RBP6.71□□□□□ -1.34
CLSTN1-202ENST00000377298 HERC2O95714 4834 aa6.7□□□□□ -1.34
CLSTN1-202ENST00000377298 LCE3CQ5T5A8 94 aa6.68□□□□□ -1.34
CLSTN1-202ENST00000377298 KRTAP9-8Q9BYQ0 159 aa6.63□□□□□ -1.35
CLSTN1-202ENST00000377298 HERC1Q15751 4861 aa6.61□□□□□ -1.35
CLSTN1-202ENST00000377298 HECTD4Q9Y4D8 3996 aa6.59□□□□□ -1.35
CLSTN1-202ENST00000377298 SPRR2EP22531 72 aa6.58□□□□□ -1.36
CLSTN1-202ENST00000377298 SPRR2BP35325 72 aa6.58□□□□□ -1.36
CLSTN1-202ENST00000377298 SPRR2AP35326 72 aa6.58□□□□□ -1.36
CLSTN1-202ENST00000377298 LCE2CQ5TA81 110 aa6.57□□□□□ -1.36
CLSTN1-202ENST00000377298 MT1BP07438 61 aa6.57□□□□□ -1.36
CLSTN1-202ENST00000377298 MT1XP80297 61 aa6.57□□□□□ -1.36
CLSTN1-202ENST00000377298 HSPG2P98160 4391 aa6.53□□□□□ -1.36
CLSTN1-202ENST00000377298 HYDINQ4G0P3 5121 aa6.49□□□□□ -1.37
CLSTN1-202ENST00000377298 KRTAP9-3Q9BYQ3 159 aa6.48□□□□□ -1.37
CLSTN1-202ENST00000377298 PKD1P98161 4303 aa6.47□□□□□ -1.37
CLSTN1-202ENST00000377298 PCLOQ9Y6V0 5065 aa6.46□□□□□ -1.38
CLSTN1-202ENST00000377298 LRP2P98164 4655 aa6.41□□□□□ -1.38
CLSTN1-202ENST00000377298 SPRR2DP22532 72 aa6.37□□□□□ -1.39
CLSTN1-202ENST00000377298 PKHD1L1Q86WI1 4243 aa6.36□□□□□ -1.39
CLSTN1-202ENST00000377298 SPRR5A0A1B0GTR4 108 aa6.35□□□□□ -1.39
CLSTN1-202ENST00000377298 PKHD1P08F94 4074 aa6.32□□□□□ -1.4
CLSTN1-202ENST00000377298 LCE2BO14633 110 aa6.31□□□□□ -1.4
CLSTN1-202ENST00000377298 KRTAP19-2Q3LHN2 52 aa6.29□□□□□ -1.4
CLSTN1-202ENST00000377298 KRTAP4-8A0A0G2JLE6 195 aa6.25□□□□□ -1.41
CLSTN1-202ENST00000377298 KRTAP4-8Q9BYQ9 185 aa6.25□□□□□ -1.41
CLSTN1-202ENST00000377298 MT1GP13640 62 aa6.25□□□□□ -1.41
CLSTN1-202ENST00000377298 KRTAP12-4P60329 112 aa6.19□□□□□ -1.42
CLSTN1-202ENST00000377298 LCE3BQ5TA77 95 aa6.15□□□□□ -1.43
CLSTN1-202ENST00000377298 KMT2CQ8NEZ4 4911 aaKnown RBP6.14□□□□□ -1.43
CLSTN1-202ENST00000377298 LPAP08519 4548 aa6.13□□□□□ -1.43
CLSTN1-202ENST00000377298 TNXBP22105 4242 aa6.04□□□□□ -1.44
CLSTN1-202ENST00000377298 EPPK1P58107 5090 aaKnown RBP6.04□□□□□ -1.44
CLSTN1-202ENST00000377298 MUC17Q685J3 4493 aa6.04□□□□□ -1.44
CLSTN1-202ENST00000377298 ABCA13Q86UQ4 5058 aa6.04□□□□□ -1.44
CLSTN1-202ENST00000377298 KRTAP19-3Q7Z4W3 81 aa6.02□□□□□ -1.45
CLSTN1-202ENST00000377298 FLGP20930 4061 aaPredicted RBP5.97□□□□□ -1.45
CLSTN1-202ENST00000377298 KRTAP19-6Q3LI70 58 aa5.95□□□□□ -1.46
CLSTN1-202ENST00000377298 MT1LQ93083 61 aa5.94□□□□□ -1.46
CLSTN1-202ENST00000377298 MT1EP04732 61 aa5.93□□□□□ -1.46
CLSTN1-202ENST00000377298 KRTAP9-2Q9BYQ4 174 aa5.91□□□□□ -1.46
CLSTN1-202ENST00000377298 LCE2AQ5TA79 106 aaPredicted RBP5.87□□□□□ -1.47
CLSTN1-202ENST00000377298 LCE2DQ5TA82 110 aaPredicted RBP5.84□□□□□ -1.48
CLSTN1-202ENST00000377298 KRTAP4-7Q9BYR0 210 aa5.79□□□□□ -1.48
CLSTN1-202ENST00000377298 SYNE1Q8NF91 8797 aaKnown RBP5.78□□□□□ -1.48
CLSTN1-202ENST00000377298 LCE3DQ9BYE3 92 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms