RNA–Protein interactions for RNA: ENST00000377298.8

CLSTN1-202, Transcript of calsyntenin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN1, Length 5,221 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-202ENST00000377298 DCAF8L2P0C7V8 631 aa31.72■■■□□ 2.67
CLSTN1-202ENST00000377298 NISCHQ9Y2I1 1504 aa31.34■■■□□ 2.61
CLSTN1-202ENST00000377298 SUPT5HO00267 1087 aaKnown RBP29.89■■■□□ 2.37
CLSTN1-202ENST00000377298 SHROOM4Q9ULL8 1493 aa29.57■■■□□ 2.32
CLSTN1-202ENST00000377298 EHMT2Q96KQ7 1210 aa28.56■■■□□ 2.16
CLSTN1-202ENST00000377298 APLP2Q06481 763 aa28.3■■■□□ 2.12
CLSTN1-202ENST00000377298 FAM9AQ8IZU1 332 aaPredicted RBP28.09■■■□□ 2.09
CLSTN1-202ENST00000377298 TRIM41Q8WV44 630 aa27.85■■■□□ 2.05
CLSTN1-202ENST00000377298 TTBK1Q5TCY1 1321 aaPredicted RBP27.54■■■□□ 2
CLSTN1-202ENST00000377298 RANGAP1P46060 587 aaPredicted RBP27.53■■■□□ 2
CLSTN1-202ENST00000377298 UBTFP17480 764 aaKnown RBP27.44■■□□□ 1.98
CLSTN1-202ENST00000377298 PCGF6Q9BYE7 350 aa27.4■■□□□ 1.98
CLSTN1-202ENST00000377298 ATP1B4Q9UN42 357 aaPredicted RBP27.36■■□□□ 1.97
CLSTN1-202ENST00000377298 PELP1Q8IZL8 1130 aaKnown RBP27.27■■□□□ 1.96
CLSTN1-202ENST00000377298 ZEB1P37275 1124 aaPredicted RBP27.08■■□□□ 1.93
CLSTN1-202ENST00000377298 CCER1Q8TC90 406 aaPredicted RBP27.04■■□□□ 1.92
CLSTN1-202ENST00000377298 ABCC9O60706 1549 aa27.01■■□□□ 1.92
CLSTN1-202ENST00000377298 PABPN1Q86U42 306 aaKnown RBP eCLIP26.71■■□□□ 1.87
CLSTN1-202ENST00000377298 CHIC1Q5VXU3 224 aa26.69■■□□□ 1.86
CLSTN1-202ENST00000377298 PPARGC1BQ86YN6 1023 aaKnown RBP26.61■■□□□ 1.85
CLSTN1-202ENST00000377298 CENPBP07199 599 aaPredicted RBP26.59■■□□□ 1.85
CLSTN1-202ENST00000377298 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.57■■□□□ 1.84
CLSTN1-202ENST00000377298 HNRNPUL2Q1KMD3 747 aaKnown RBP26.57■■□□□ 1.84
CLSTN1-202ENST00000377298 TRIM26Q12899 539 aaPredicted RBP26.55■■□□□ 1.84
CLSTN1-202ENST00000377298 LOC105371045A0A1W2PR82 267 aa26.45■■□□□ 1.83
CLSTN1-202ENST00000377298 MYT1LQ9UL68 1186 aa26.44■■□□□ 1.82
CLSTN1-202ENST00000377298 ITGAEP38570 1179 aa26.34■■□□□ 1.81
CLSTN1-202ENST00000377298 HRCP23327 699 aa26.23■■□□□ 1.79
CLSTN1-202ENST00000377298 NEFLP07196 543 aa26.1■■□□□ 1.77
CLSTN1-202ENST00000377298 YTHDC1Q96MU7 727 aaKnown RBP26■■□□□ 1.75
CLSTN1-202ENST00000377298 ZCCHC6Q5VYS8 1495 aaKnown RBP25.94■■□□□ 1.74
CLSTN1-202ENST00000377298 ERICH6Q7L0X2 663 aa25.93■■□□□ 1.74
CLSTN1-202ENST00000377298 POLR3GLQ9BT43 218 aa25.88■■□□□ 1.73
CLSTN1-202ENST00000377298 SCRIBQ14160 1630 aa25.87■■□□□ 1.73
CLSTN1-202ENST00000377298 CCDC180Q9P1Z9 1646 aa25.86■■□□□ 1.73
CLSTN1-202ENST00000377298 FAM50AQ14320 339 aaKnown RBP25.85■■□□□ 1.73
CLSTN1-202ENST00000377298 MYT1Q01538 1121 aa25.83■■□□□ 1.73
CLSTN1-202ENST00000377298 FBLN2P98095 1184 aa25.8■■□□□ 1.72
CLSTN1-202ENST00000377298 CSRNP3Q8WYN3 585 aa25.69■■□□□ 1.7
CLSTN1-202ENST00000377298 TRIM52Q96A61 297 aa25.66■■□□□ 1.7
CLSTN1-202ENST00000377298 SLC4A1APQ9BWU0 796 aaKnown RBP25.51■■□□□ 1.67
CLSTN1-202ENST00000377298 CNGB1Q14028 1251 aaPredicted RBP25.49■■□□□ 1.67
CLSTN1-202ENST00000377298 P3H3Q8IVL6 736 aa25.46■■□□□ 1.67
CLSTN1-202ENST00000377298 RB1CC1Q8TDY2 1594 aa25.44■■□□□ 1.66
CLSTN1-202ENST00000377298 NEUROD1Q13562 356 aa25.41■■□□□ 1.66
CLSTN1-202ENST00000377298 CDK11AQ9UQ88 783 aaPredicted RBP25.37■■□□□ 1.65
CLSTN1-202ENST00000377298 DIEXFQ68CQ4 756 aaKnown RBP25.32■■□□□ 1.64
CLSTN1-202ENST00000377298 ARID3CA6NKF2 412 aa25.3■■□□□ 1.64
CLSTN1-202ENST00000377298 NACADO15069 1562 aa25.23■■□□□ 1.63
CLSTN1-202ENST00000377298 ZNF326Q5BKZ1 582 aaKnown RBP25.22■■□□□ 1.63
CLSTN1-202ENST00000377298 DAXXQ9UER7 740 aaPredicted RBP25.18■■□□□ 1.62
CLSTN1-202ENST00000377298 ZNF777Q9ULD5 760 aaPredicted RBP25.17■■□□□ 1.62
CLSTN1-202ENST00000377298 NPM1P06748 294 aaKnown RBP eCLIP25.05■■□□□ 1.6
CLSTN1-202ENST00000377298 ANP32CO43423 234 aa25.05■■□□□ 1.6
CLSTN1-202ENST00000377298 RSF1Q96T23 1441 aaPredicted RBP25.01■■□□□ 1.59
CLSTN1-202ENST00000377298 BCANQ96GW7 911 aa24.98■■□□□ 1.59
CLSTN1-202ENST00000377298 ZNF316A6NFI3 1004 aaPredicted RBP24.94■■□□□ 1.58
CLSTN1-202ENST00000377298 CHMP7Q8WUX9 453 aaPredicted RBP24.93■■□□□ 1.58
CLSTN1-202ENST00000377298 ESF1Q9H501 851 aaKnown RBP24.9■■□□□ 1.58
CLSTN1-202ENST00000377298 BAZ1BQ9UIG0 1483 aaKnown RBP24.89■■□□□ 1.58
CLSTN1-202ENST00000377298 CLSPNQ9HAW4 1339 aa24.85■■□□□ 1.57
CLSTN1-202ENST00000377298 DCAF1Q9Y4B6 1507 aa24.84■■□□□ 1.57
CLSTN1-202ENST00000377298 EEA1Q15075 1411 aa24.82■■□□□ 1.56
CLSTN1-202ENST00000377298 GTF3C3Q9Y5Q9 886 aa24.81■■□□□ 1.56
CLSTN1-202ENST00000377298 TONSLQ96HA7 1378 aa24.76■■□□□ 1.55
CLSTN1-202ENST00000377298 MTUS2Q5JR59 1369 aa24.76■■□□□ 1.55
CLSTN1-202ENST00000377298 CLIP1P30622 1438 aa24.75■■□□□ 1.55
CLSTN1-202ENST00000377298 WRNQ14191 1432 aaPredicted RBP eCLIP24.74■■□□□ 1.55
CLSTN1-202ENST00000377298 NEFMP07197 916 aa24.74■■□□□ 1.55
CLSTN1-202ENST00000377298 TSPY4P0CV99 314 aa24.72■■□□□ 1.55
CLSTN1-202ENST00000377298 TSPY10P0CW01 314 aa24.72■■□□□ 1.55
CLSTN1-202ENST00000377298 BAZ1AQ9NRL2 1556 aaPredicted RBP24.71■■□□□ 1.55
CLSTN1-202ENST00000377298 STAG3Q9UJ98 1225 aa24.7■■□□□ 1.54
CLSTN1-202ENST00000377298 CHGAP10645 457 aaKnown RBP24.68■■□□□ 1.54
CLSTN1-202ENST00000377298 CHIC2Q9UKJ5 165 aa24.67■■□□□ 1.54
CLSTN1-202ENST00000377298 SLC24A1O60721 1099 aa24.65■■□□□ 1.54
CLSTN1-202ENST00000377298 GOLGA3Q08378 1498 aa24.65■■□□□ 1.54
CLSTN1-202ENST00000377298 KIF27Q86VH2 1401 aa24.62■■□□□ 1.53
CLSTN1-202ENST00000377298 ACIN1Q9UKV3 1341 aaKnown RBP24.6■■□□□ 1.53
CLSTN1-202ENST00000377298 ZBTB47Q9UFB7 747 aaPredicted RBP24.6■■□□□ 1.53
CLSTN1-202ENST00000377298 PLPPR3Q6T4P5 718 aa24.59■■□□□ 1.53
CLSTN1-202ENST00000377298 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.58■■□□□ 1.533e-7■□□□□ 9.3
CLSTN1-202ENST00000377298 CANXP27824 592 aaKnown RBP24.54■■□□□ 1.52
CLSTN1-202ENST00000377298 PLEKHD1A6NEE1 506 aa24.53■■□□□ 1.52
CLSTN1-202ENST00000377298 CECR2Q9BXF3 1484 aa24.51■■□□□ 1.51
CLSTN1-202ENST00000377298 CEP162Q5TB80 1403 aa24.49■■□□□ 1.51
CLSTN1-202ENST00000377298 ERCC6Q03468 1493 aa24.48■■□□□ 1.51
CLSTN1-202ENST00000377298 CEP164Q9UPV0 1460 aa24.46■■□□□ 1.51
CLSTN1-202ENST00000377298 TNIKQ9UKE5 1360 aa24.42■■□□□ 1.5
CLSTN1-202ENST00000377298 KCNH8Q96L42 1107 aa24.42■■□□□ 1.5
CLSTN1-202ENST00000377298 RTL5Q5HYW3 569 aaPredicted RBP24.42■■□□□ 1.5
CLSTN1-202ENST00000377298 RRP7BPQ9NSQ0 103 aa24.34■■□□□ 1.49
CLSTN1-202ENST00000377298 DDX10Q13206 875 aaKnown RBP24.33■■□□□ 1.49
CLSTN1-202ENST00000377298 KDM2AQ9Y2K7 1162 aa24.31■■□□□ 1.48
CLSTN1-202ENST00000377298 CFDP1Q9UEE9 299 aaPredicted RBP24.29■■□□□ 1.48
CLSTN1-202ENST00000377298 MYO15BQ96JP2 1530 aa24.27■■□□□ 1.48
CLSTN1-202ENST00000377298 BCL11AQ9H165 835 aa24.27■■□□□ 1.48
CLSTN1-202ENST00000377298 SMARCA2P51531 1590 aa24.24■■□□□ 1.47
CLSTN1-202ENST00000377298 CARMIL1Q5VZK9 1371 aa24.21■■□□□ 1.47
CLSTN1-202ENST00000377298 MROH2BQ7Z745 1585 aa24.2■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 181 ms