RNA–Protein interactions for RNA: ENST00000375360.7

PTPDC1-202, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,517 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-202ENST00000375360 KRTAP13-4Q3LI77 160 aa8.52□□□□□ -1.05
PTPDC1-202ENST00000375360 PP632Q6XCG6 107 aa8.5□□□□□ -1.05
PTPDC1-202ENST00000375360 DYNC1H1Q14204 4646 aaKnown RBP8.5□□□□□ -1.05
PTPDC1-202ENST00000375360 KRTAP12-1P59990 96 aa8.5□□□□□ -1.05
PTPDC1-202ENST00000375360 RYR1P21817 5038 aa8.48□□□□□ -1.05
PTPDC1-202ENST00000375360 LRP1BQ9NZR2 4599 aa8.45□□□□□ -1.06
PTPDC1-202ENST00000375360 ALMS1Q8TCU4 4167 aa8.43□□□□□ -1.06
PTPDC1-202ENST00000375360 PRO2289Q9P1D8 64 aa8.42□□□□□ -1.06
PTPDC1-202ENST00000375360 KIAA1109Q2LD37 5005 aa8.41□□□□□ -1.06
PTPDC1-202ENST00000375360 KRTAP3-3Q9BYR6 98 aa8.41□□□□□ -1.06
PTPDC1-202ENST00000375360 KMT2AQ03164 3969 aa8.4□□□□□ -1.07
PTPDC1-202ENST00000375360 LYSTQ99698 3801 aa8.4□□□□□ -1.07
PTPDC1-202ENST00000375360 DNAH17Q9UFH2 4485 aa8.37□□□□□ -1.07
PTPDC1-202ENST00000375360 ANK2Q01484 3957 aa8.34□□□□□ -1.07
PTPDC1-202ENST00000375360 DNAH8Q96JB1 4490 aa8.33□□□□□ -1.08
PTPDC1-202ENST00000375360 KRTAP3-2Q9BYR7 98 aa8.3□□□□□ -1.08
PTPDC1-202ENST00000375360 DNAH2Q9P225 4427 aa8.3□□□□□ -1.08
PTPDC1-202ENST00000375360 MYCBP2O75592 4640 aa8.25□□□□□ -1.09
PTPDC1-202ENST00000375360 RYR3Q15413 4870 aa8.21□□□□□ -1.1
PTPDC1-202ENST00000375360 SACSQ9NZJ4 4579 aa8.2□□□□□ -1.1
PTPDC1-202ENST00000375360 VPS13BQ7Z7G8 4022 aa8.12□□□□□ -1.11
PTPDC1-202ENST00000375360 FAT2Q9NYQ8 4349 aa8.08□□□□□ -1.12
PTPDC1-202ENST00000375360 FAT3Q8TDW7 4589 aa8.06□□□□□ -1.12
PTPDC1-202ENST00000375360 DYNC2H1Q8NCM8 4307 aaKnown RBP8.06□□□□□ -1.12
PTPDC1-202ENST00000375360 LORP23490 312 aaPredicted RBP8.05□□□□□ -1.12
PTPDC1-202ENST00000375360 KRTAP4-1Q9BYQ7 146 aa8.04□□□□□ -1.12
PTPDC1-202ENST00000375360 LRP1Q07954 4544 aaKnown RBP8.03□□□□□ -1.12
PTPDC1-202ENST00000375360 DNAH3Q8TD57 4116 aa8.02□□□□□ -1.13
PTPDC1-202ENST00000375360 APOBP04114 4563 aaKnown RBP8.01□□□□□ -1.13
PTPDC1-202ENST00000375360 KRTAP17-1Q9BYP8 105 aa8□□□□□ -1.13
PTPDC1-202ENST00000375360 CMYA5Q8N3K9 4069 aa7.99□□□□□ -1.13
PTPDC1-202ENST00000375360 HYDINQ4G0P3 5121 aa7.95□□□□□ -1.14
PTPDC1-202ENST00000375360 DNAH6Q9C0G6 4158 aa7.95□□□□□ -1.14
PTPDC1-202ENST00000375360 DNAH7Q8WXX0 4024 aa7.92□□□□□ -1.14
PTPDC1-202ENST00000375360 FRAS1Q86XX4 4008 aa7.84□□□□□ -1.15
PTPDC1-202ENST00000375360 RYR2Q92736 4967 aa7.82□□□□□ -1.16
PTPDC1-202ENST00000375360 HERC2O95714 4834 aa7.81□□□□□ -1.16
PTPDC1-202ENST00000375360 PKHD1P08F94 4074 aa7.77□□□□□ -1.17
PTPDC1-202ENST00000375360 KMT2CQ8NEZ4 4911 aaKnown RBP7.74□□□□□ -1.17
PTPDC1-202ENST00000375360 KRTAP15-1Q3LI76 137 aa7.74□□□□□ -1.17
PTPDC1-202ENST00000375360 HECTD4Q9Y4D8 3996 aa7.73□□□□□ -1.17
PTPDC1-202ENST00000375360 LRP2P98164 4655 aa7.71□□□□□ -1.18
PTPDC1-202ENST00000375360 KRTAP10-12P60413 245 aa7.68□□□□□ -1.18
PTPDC1-202ENST00000375360 MT1HP80294 61 aa7.65□□□□□ -1.18
PTPDC1-202ENST00000375360 MT2AP02795 61 aa7.53□□□□□ -1.2
PTPDC1-202ENST00000375360 LCE3AQ5TA76 89 aa7.51□□□□□ -1.21
PTPDC1-202ENST00000375360 HSPG2P98160 4391 aa7.49□□□□□ -1.21
PTPDC1-202ENST00000375360 KRTAP12-3P60328 96 aa7.48□□□□□ -1.21
PTPDC1-202ENST00000375360 BIRC6Q9NR09 4857 aa7.47□□□□□ -1.21
PTPDC1-202ENST00000375360 MT1FP04733 61 aa7.44□□□□□ -1.22
PTPDC1-202ENST00000375360 CRCT1Q9UGL9 99 aa7.4□□□□□ -1.22
PTPDC1-202ENST00000375360 PCLOQ9Y6V0 5065 aa7.39□□□□□ -1.23
PTPDC1-202ENST00000375360 EPPK1P58107 5090 aaKnown RBP7.35□□□□□ -1.23
PTPDC1-202ENST00000375360 SPRR2GQ9BYE4 73 aa7.34□□□□□ -1.23
PTPDC1-202ENST00000375360 PKD1P98161 4303 aa7.33□□□□□ -1.24
PTPDC1-202ENST00000375360 LPAP08519 4548 aa7.29□□□□□ -1.24
PTPDC1-202ENST00000375360 ABCA13Q86UQ4 5058 aa7.23□□□□□ -1.25
PTPDC1-202ENST00000375360 KRTAP23-1A1A580 65 aa7.21□□□□□ -1.25
PTPDC1-202ENST00000375360 HERC1Q15751 4861 aa7.2□□□□□ -1.26
PTPDC1-202ENST00000375360 KRTAP8-1Q8IUC2 63 aa7.18□□□□□ -1.26
PTPDC1-202ENST00000375360 KRTAP19-1Q8IUB9 90 aa7.13□□□□□ -1.27
PTPDC1-202ENST00000375360 LCE2CQ5TA81 110 aa7.04□□□□□ -1.28
PTPDC1-202ENST00000375360 KRTAP9-8Q9BYQ0 159 aa6.97□□□□□ -1.29
PTPDC1-202ENST00000375360 FSIP2Q5CZC0 6907 aa6.97□□□□□ -1.29
PTPDC1-202ENST00000375360 TNXBP22105 4242 aa6.91□□□□□ -1.3
PTPDC1-202ENST00000375360 UBR4Q5T4S7 5183 aa6.91□□□□□ -1.3
PTPDC1-202ENST00000375360 KRTAP19-8Q3LI54 63 aa6.9□□□□□ -1.31
PTPDC1-202ENST00000375360 RNF213Q63HN8 5207 aa6.88□□□□□ -1.31
PTPDC1-202ENST00000375360 KRTAP19-5Q3LI72 72 aa6.88□□□□□ -1.31
PTPDC1-202ENST00000375360 PKHD1L1Q86WI1 4243 aa6.87□□□□□ -1.31
PTPDC1-202ENST00000375360 KRTAP10-7P60409 375 aaPredicted RBP6.86□□□□□ -1.31
PTPDC1-202ENST00000375360 KRTAP19-2Q3LHN2 52 aa6.84□□□□□ -1.32
PTPDC1-202ENST00000375360 MT1BP07438 61 aa6.83□□□□□ -1.32
PTPDC1-202ENST00000375360 SPRR2FQ96RM1 72 aa6.82□□□□□ -1.32
PTPDC1-202ENST00000375360 MT1XP80297 61 aa6.78□□□□□ -1.32
PTPDC1-202ENST00000375360 MUC2Q02817 5179 aa6.78□□□□□ -1.32
PTPDC1-202ENST00000375360 MUC17Q685J3 4493 aa6.77□□□□□ -1.33
PTPDC1-202ENST00000375360 KRTAP9-3Q9BYQ3 159 aa6.75□□□□□ -1.33
PTPDC1-202ENST00000375360 KRTAP10-5P60370 271 aa6.72□□□□□ -1.33
PTPDC1-202ENST00000375360 FAT4Q6V0I7 4981 aa6.71□□□□□ -1.33
PTPDC1-202ENST00000375360 KRTAP4-8A0A0G2JLE6 195 aa6.66□□□□□ -1.34
PTPDC1-202ENST00000375360 KRTAP4-8Q9BYQ9 185 aa6.66□□□□□ -1.34
PTPDC1-202ENST00000375360 INE1O15225 51 aa6.65□□□□□ -1.34
PTPDC1-202ENST00000375360 FLGP20930 4061 aaPredicted RBP6.63□□□□□ -1.35
PTPDC1-202ENST00000375360 LCE3CQ5T5A8 94 aa6.59□□□□□ -1.35
PTPDC1-202ENST00000375360 LCE2BO14633 110 aa6.57□□□□□ -1.36
PTPDC1-202ENST00000375360 HMCN2Q8NDA2 5059 aa6.53□□□□□ -1.36
PTPDC1-202ENST00000375360 SYNE1Q8NF91 8797 aaKnown RBP6.46□□□□□ -1.38
PTPDC1-202ENST00000375360 SPRR2EP22531 72 aa6.3□□□□□ -1.4
PTPDC1-202ENST00000375360 SPRR2BP35325 72 aa6.3□□□□□ -1.4
PTPDC1-202ENST00000375360 SPRR2AP35326 72 aa6.3□□□□□ -1.4
PTPDC1-202ENST00000375360 LCE2AQ5TA79 106 aaPredicted RBP6.27□□□□□ -1.41
PTPDC1-202ENST00000375360 MT1GP13640 62 aa6.25□□□□□ -1.41
PTPDC1-202ENST00000375360 KRTAP4-7Q9BYR0 210 aa6.21□□□□□ -1.42
PTPDC1-202ENST00000375360 KRTAP19-4Q3LI73 84 aa6.18□□□□□ -1.42
PTPDC1-202ENST00000375360 OBSCNQ5VST9 7968 aa6.12□□□□□ -1.43
PTPDC1-202ENST00000375360 LCE3BQ5TA77 95 aa6.08□□□□□ -1.44
PTPDC1-202ENST00000375360 KRTAP9-2Q9BYQ4 174 aa6.07□□□□□ -1.44
PTPDC1-202ENST00000375360 SPRR2DP22532 72 aa6.06□□□□□ -1.44
PTPDC1-202ENST00000375360 SPRR5A0A1B0GTR4 108 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms