RNA–Protein interactions for RNA: ENST00000375360.7

PTPDC1-202, Transcript of protein tyrosine phosphatase domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPDC1, Length 4,517 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPDC1-202ENST00000375360 NISCHQ9Y2I1 1504 aa32.75■■■□□ 2.83
PTPDC1-202ENST00000375360 DCAF8L2P0C7V8 631 aa32.65■■■□□ 2.82
PTPDC1-202ENST00000375360 SUPT5HO00267 1087 aaKnown RBP30.92■■■□□ 2.54
PTPDC1-202ENST00000375360 SHROOM4Q9ULL8 1493 aa30.85■■■□□ 2.53
PTPDC1-202ENST00000375360 EHMT2Q96KQ7 1210 aa29.66■■■□□ 2.34
PTPDC1-202ENST00000375360 FAM9AQ8IZU1 332 aaPredicted RBP29.08■■■□□ 2.25
PTPDC1-202ENST00000375360 TRIM41Q8WV44 630 aa28.54■■■□□ 2.16
PTPDC1-202ENST00000375360 TTBK1Q5TCY1 1321 aaPredicted RBP28.5■■■□□ 2.15
PTPDC1-202ENST00000375360 RANGAP1P46060 587 aaPredicted RBP28.41■■■□□ 2.14
PTPDC1-202ENST00000375360 APLP2Q06481 763 aa28.33■■■□□ 2.13
PTPDC1-202ENST00000375360 PCGF6Q9BYE7 350 aa28.29■■■□□ 2.12
PTPDC1-202ENST00000375360 ABCC9O60706 1549 aa28.22■■■□□ 2.11
PTPDC1-202ENST00000375360 UBTFP17480 764 aaKnown RBP28.02■■■□□ 2.08
PTPDC1-202ENST00000375360 PABPN1Q86U42 306 aaKnown RBP eCLIP27.93■■■□□ 2.06
PTPDC1-202ENST00000375360 ATP1B4Q9UN42 357 aaPredicted RBP27.85■■■□□ 2.05
PTPDC1-202ENST00000375360 CHIC1Q5VXU3 224 aa27.85■■■□□ 2.05
PTPDC1-202ENST00000375360 PPARGC1BQ86YN6 1023 aaKnown RBP27.82■■■□□ 2.04
PTPDC1-202ENST00000375360 LOC105371045A0A1W2PR82 267 aa27.78■■■□□ 2.04
PTPDC1-202ENST00000375360 CCER1Q8TC90 406 aaPredicted RBP27.48■■□□□ 1.99
PTPDC1-202ENST00000375360 TRIM26Q12899 539 aaPredicted RBP27.13■■□□□ 1.93
PTPDC1-202ENST00000375360 ZCCHC6Q5VYS8 1495 aaKnown RBP27.12■■□□□ 1.93
PTPDC1-202ENST00000375360 ZEB1P37275 1124 aaPredicted RBP27.08■■□□□ 1.93
PTPDC1-202ENST00000375360 ITGAEP38570 1179 aa27.07■■□□□ 1.92
PTPDC1-202ENST00000375360 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.96■■□□□ 1.91
PTPDC1-202ENST00000375360 HNRNPUL2Q1KMD3 747 aaKnown RBP26.96■■□□□ 1.91
PTPDC1-202ENST00000375360 SCRIBQ14160 1630 aa26.94■■□□□ 1.9
PTPDC1-202ENST00000375360 CCDC180Q9P1Z9 1646 aa26.81■■□□□ 1.88
PTPDC1-202ENST00000375360 HRCP23327 699 aa26.69■■□□□ 1.86
PTPDC1-202ENST00000375360 YTHDC1Q96MU7 727 aaKnown RBP26.56■■□□□ 1.84
PTPDC1-202ENST00000375360 MYT1LQ9UL68 1186 aa26.53■■□□□ 1.84
PTPDC1-202ENST00000375360 CENPBP07199 599 aaPredicted RBP26.49■■□□□ 1.83
PTPDC1-202ENST00000375360 CSRNP3Q8WYN3 585 aa26.49■■□□□ 1.83
PTPDC1-202ENST00000375360 PELP1Q8IZL8 1130 aaKnown RBP26.49■■□□□ 1.83
PTPDC1-202ENST00000375360 FBLN2P98095 1184 aa26.47■■□□□ 1.83
PTPDC1-202ENST00000375360 P3H3Q8IVL6 736 aa26.4■■□□□ 1.82
PTPDC1-202ENST00000375360 FAM50AQ14320 339 aaKnown RBP26.39■■□□□ 1.82
PTPDC1-202ENST00000375360 ARID3CA6NKF2 412 aa26.26■■□□□ 1.79
PTPDC1-202ENST00000375360 POLR3GLQ9BT43 218 aa26.26■■□□□ 1.79
PTPDC1-202ENST00000375360 RSF1Q96T23 1441 aaPredicted RBP26.21■■□□□ 1.79
PTPDC1-202ENST00000375360 RB1CC1Q8TDY2 1594 aa26.2■■□□□ 1.79
PTPDC1-202ENST00000375360 CNGB1Q14028 1251 aaPredicted RBP26.2■■□□□ 1.78
PTPDC1-202ENST00000375360 TRIM52Q96A61 297 aa26.06■■□□□ 1.76
PTPDC1-202ENST00000375360 NACADO15069 1562 aa26.05■■□□□ 1.76
PTPDC1-202ENST00000375360 NEUROD1Q13562 356 aa26.04■■□□□ 1.76
PTPDC1-202ENST00000375360 CECR2Q9BXF3 1484 aa25.96■■□□□ 1.75
PTPDC1-202ENST00000375360 NEFLP07196 543 aa25.88■■□□□ 1.73
PTPDC1-202ENST00000375360 DIEXFQ68CQ4 756 aaKnown RBP25.87■■□□□ 1.73
PTPDC1-202ENST00000375360 MYO15BQ96JP2 1530 aa25.82■■□□□ 1.72
PTPDC1-202ENST00000375360 DCAF1Q9Y4B6 1507 aa25.8■■□□□ 1.72
PTPDC1-202ENST00000375360 ZNF777Q9ULD5 760 aaPredicted RBP25.76■■□□□ 1.72
PTPDC1-202ENST00000375360 ZNF326Q5BKZ1 582 aaKnown RBP25.74■■□□□ 1.71
PTPDC1-202ENST00000375360 BAZ1BQ9UIG0 1483 aaKnown RBP25.69■■□□□ 1.7
PTPDC1-202ENST00000375360 SLC4A1APQ9BWU0 796 aaKnown RBP25.63■■□□□ 1.69
PTPDC1-202ENST00000375360 WRNQ14191 1432 aaPredicted RBP eCLIP25.59■■□□□ 1.69
PTPDC1-202ENST00000375360 BAZ1AQ9NRL2 1556 aaPredicted RBP25.57■■□□□ 1.68
PTPDC1-202ENST00000375360 CDK11AQ9UQ88 783 aaPredicted RBP25.55■■□□□ 1.68
PTPDC1-202ENST00000375360 MROH2BQ7Z745 1585 aa25.52■■□□□ 1.68
PTPDC1-202ENST00000375360 CHMP7Q8WUX9 453 aaPredicted RBP25.5■■□□□ 1.67
PTPDC1-202ENST00000375360 CLIP1P30622 1438 aa25.49■■□□□ 1.67
PTPDC1-202ENST00000375360 CHIC2Q9UKJ5 165 aa25.47■■□□□ 1.67
PTPDC1-202ENST00000375360 ERICH6Q7L0X2 663 aa25.46■■□□□ 1.67
PTPDC1-202ENST00000375360 ZNF316A6NFI3 1004 aaPredicted RBP25.45■■□□□ 1.67
PTPDC1-202ENST00000375360 CEP162Q5TB80 1403 aa25.36■■□□□ 1.65
PTPDC1-202ENST00000375360 MTUS2Q5JR59 1369 aa25.29■■□□□ 1.64
PTPDC1-202ENST00000375360 EEA1Q15075 1411 aa25.29■■□□□ 1.64
PTPDC1-202ENST00000375360 SOGA1O94964 1423 aa25.28■■□□□ 1.64
PTPDC1-202ENST00000375360 GOLGA3Q08378 1498 aa25.28■■□□□ 1.64
PTPDC1-202ENST00000375360 CCDC88BA6NC98 1476 aa25.27■■□□□ 1.64
PTPDC1-202ENST00000375360 KIF27Q86VH2 1401 aa25.26■■□□□ 1.63
PTPDC1-202ENST00000375360 ANP32CO43423 234 aa25.25■■□□□ 1.63
PTPDC1-202ENST00000375360 NPM1P06748 294 aaKnown RBP eCLIP25.21■■□□□ 1.63
PTPDC1-202ENST00000375360 TNIKQ9UKE5 1360 aa25.17■■□□□ 1.62
PTPDC1-202ENST00000375360 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.16■■□□□ 1.62
PTPDC1-202ENST00000375360 ABCC8Q09428 1581 aa25.14■■□□□ 1.61
PTPDC1-202ENST00000375360 KCNH8Q96L42 1107 aa25.13■■□□□ 1.61
PTPDC1-202ENST00000375360 RRP7BPQ9NSQ0 103 aa25.12■■□□□ 1.61
PTPDC1-202ENST00000375360 TONSLQ96HA7 1378 aa25.12■■□□□ 1.61
PTPDC1-202ENST00000375360 WIZO95785 1651 aa25.1■■□□□ 1.61
PTPDC1-202ENST00000375360 CEP164Q9UPV0 1460 aa25.09■■□□□ 1.61
PTPDC1-202ENST00000375360 TSPY4P0CV99 314 aa25.09■■□□□ 1.61
PTPDC1-202ENST00000375360 TSPY10P0CW01 314 aa25.09■■□□□ 1.61
PTPDC1-202ENST00000375360 CHGAP10645 457 aaKnown RBP25.09■■□□□ 1.61
PTPDC1-202ENST00000375360 BCANQ96GW7 911 aa25.07■■□□□ 1.6
PTPDC1-202ENST00000375360 GTF3C3Q9Y5Q9 886 aa25.06■■□□□ 1.6
PTPDC1-202ENST00000375360 DDX10Q13206 875 aaKnown RBP25.04■■□□□ 1.6
PTPDC1-202ENST00000375360 HIRIP3Q9BW71 556 aaPredicted RBP25.04■■□□□ 1.6
PTPDC1-202ENST00000375360 CUX2O14529 1486 aa25.04■■□□□ 1.6
PTPDC1-202ENST00000375360 ERCC6Q03468 1493 aa25.03■■□□□ 1.6
PTPDC1-202ENST00000375360 PLPPR3Q6T4P5 718 aa25.02■■□□□ 1.6
PTPDC1-202ENST00000375360 CARMIL1Q5VZK9 1371 aa24.99■■□□□ 1.59
PTPDC1-202ENST00000375360 PLEKHD1A6NEE1 506 aa24.99■■□□□ 1.59
PTPDC1-202ENST00000375360 KDM2AQ9Y2K7 1162 aa24.95■■□□□ 1.59
PTPDC1-202ENST00000375360 SMARCA2P51531 1590 aa24.93■■□□□ 1.58
PTPDC1-202ENST00000375360 TDRD9Q8NDG6 1382 aaKnown RBP24.91■■□□□ 1.58
PTPDC1-202ENST00000375360 ESF1Q9H501 851 aaKnown RBP24.89■■□□□ 1.58
PTPDC1-202ENST00000375360 ATAD2BQ9ULI0 1458 aa24.88■■□□□ 1.57
PTPDC1-202ENST00000375360 CFDP1Q9UEE9 299 aaPredicted RBP24.86■■□□□ 1.57
PTPDC1-202ENST00000375360 STAG3Q9UJ98 1225 aa24.84■■□□□ 1.57
PTPDC1-202ENST00000375360 SENP3Q9H4L4 574 aaPredicted RBP24.83■■□□□ 1.57
PTPDC1-202ENST00000375360 TOP2AP11388 1531 aaKnown RBP24.83■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms