RNA–Protein interactions for RNA: ENST00000375254.7

UBR4-204, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBR4, Length 15,906 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-204ENST00000375254 TRRAPQ9Y4A5 3859 aa2.71□□□□□ -1.98
UBR4-204ENST00000375254 FBN1P35555 2871 aaKnown RBP2.71□□□□□ -1.98
UBR4-204ENST00000375254 KRTAP10-5P60370 271 aa2.68□□□□□ -1.98
UBR4-204ENST00000375254 FRAS1Q86XX4 4008 aa2.67□□□□□ -1.98
UBR4-204ENST00000375254 SPRR5A0A1B0GTR4 108 aa2.65□□□□□ -1.98
UBR4-204ENST00000375254 LRP1BQ9NZR2 4599 aa2.64□□□□□ -1.99
UBR4-204ENST00000375254 CSMD2Q7Z408 3487 aa2.63□□□□□ -1.99
UBR4-204ENST00000375254 VPS13DQ5THJ4 4388 aa2.63□□□□□ -1.99
UBR4-204ENST00000375254 DNAH9Q9NYC9 4486 aa2.62□□□□□ -1.99
UBR4-204ENST00000375254 LCE3CQ5T5A8 94 aa2.61□□□□□ -1.99
UBR4-204ENST00000375254 CSMD3Q7Z407 3707 aa2.6□□□□□ -1.99
UBR4-204ENST00000375254 DNAH3Q8TD57 4116 aa2.6□□□□□ -1.99
UBR4-204ENST00000375254 VPS13BQ7Z7G8 4022 aa2.6□□□□□ -1.99
UBR4-204ENST00000375254 PLECQ15149 4684 aaKnown RBP2.59□□□□□ -1.99
UBR4-204ENST00000375254 APOBP04114 4563 aaKnown RBP2.59□□□□□ -1.99
UBR4-204ENST00000375254 KRTAP8-1Q8IUC2 63 aa2.59□□□□□ -2
UBR4-204ENST00000375254 DNAH6Q9C0G6 4158 aa2.59□□□□□ -2
UBR4-204ENST00000375254 BSNQ9UPA5 3926 aa2.56□□□□□ -2
UBR4-204ENST00000375254 MYCBP2O75592 4640 aa2.55□□□□□ -2
UBR4-204ENST00000375254 LRP1Q07954 4544 aaKnown RBP2.55□□□□□ -2
UBR4-204ENST00000375254 SPRR2GQ9BYE4 73 aa2.54□□□□□ -2
UBR4-204ENST00000375254 KRTAP10-4P60372 401 aaPredicted RBP2.54□□□□□ -2
UBR4-204ENST00000375254 VPS13CQ709C8 3753 aa2.54□□□□□ -2
UBR4-204ENST00000375254 SACSQ9NZJ4 4579 aa2.53□□□□□ -2
UBR4-204ENST00000375254 FAT1Q14517 4588 aa2.53□□□□□ -2
UBR4-204ENST00000375254 KRTAP12-4P60329 112 aa2.53□□□□□ -2
UBR4-204ENST00000375254 ANK2Q01484 3957 aa2.53□□□□□ -2
UBR4-204ENST00000375254 CMYA5Q8N3K9 4069 aa2.53□□□□□ -2
UBR4-204ENST00000375254 DNAH7Q8WXX0 4024 aa2.51□□□□□ -2.01
UBR4-204ENST00000375254 MT1HL1P0DM35 61 aa2.51□□□□□ -2.01
UBR4-204ENST00000375254 FAT3Q8TDW7 4589 aa2.5□□□□□ -2.01
UBR4-204ENST00000375254 LORP23490 312 aaPredicted RBP2.49□□□□□ -2.01
UBR4-204ENST00000375254 DYNC2H1Q8NCM8 4307 aaKnown RBP2.48□□□□□ -2.01
UBR4-204ENST00000375254 DNAH5Q8TE73 4624 aa2.47□□□□□ -2.01
UBR4-204ENST00000375254 CRCT1Q9UGL9 99 aa2.46□□□□□ -2.02
UBR4-204ENST00000375254 HECTD4Q9Y4D8 3996 aa2.46□□□□□ -2.02
UBR4-204ENST00000375254 PRKDCP78527 4128 aaKnown RBP2.45□□□□□ -2.02
UBR4-204ENST00000375254 DYNC1H1Q14204 4646 aaKnown RBP2.44□□□□□ -2.02
UBR4-204ENST00000375254 KMT2AQ03164 3969 aa2.44□□□□□ -2.02
UBR4-204ENST00000375254 ZNF469Q96JG9 3925 aaPredicted RBP2.42□□□□□ -2.02
UBR4-204ENST00000375254 PKD1P98161 4303 aa2.41□□□□□ -2.02
UBR4-204ENST00000375254 LYSTQ99698 3801 aa2.4□□□□□ -2.03
UBR4-204ENST00000375254 FAT2Q9NYQ8 4349 aa2.39□□□□□ -2.03
UBR4-204ENST00000375254 KRTAP19-5Q3LI72 72 aa2.39□□□□□ -2.03
UBR4-204ENST00000375254 FLGP20930 4061 aaPredicted RBP2.38□□□□□ -2.03
UBR4-204ENST00000375254 KRTAP10-7P60409 375 aaPredicted RBP2.37□□□□□ -2.03
UBR4-204ENST00000375254 DNHD1Q96M86 4753 aa2.37□□□□□ -2.03
UBR4-204ENST00000375254 STARD9Q9P2P6 4700 aa2.37□□□□□ -2.03
UBR4-204ENST00000375254 RYR1P21817 5038 aa2.36□□□□□ -2.03
UBR4-204ENST00000375254 KRTAP17-1Q9BYP8 105 aa2.36□□□□□ -2.03
UBR4-204ENST00000375254 KIAA1109Q2LD37 5005 aa2.35□□□□□ -2.03
UBR4-204ENST00000375254 LCE3EQ5T5B0 92 aa2.34□□□□□ -2.03
UBR4-204ENST00000375254 HSPG2P98160 4391 aa2.32□□□□□ -2.04
UBR4-204ENST00000375254 LCE3DQ9BYE3 92 aa2.32□□□□□ -2.04
UBR4-204ENST00000375254 KRTAP4-1Q9BYQ7 146 aa2.31□□□□□ -2.04
UBR4-204ENST00000375254 PKHD1L1Q86WI1 4243 aa2.27□□□□□ -2.05
UBR4-204ENST00000375254 TNXBP22105 4242 aa2.27□□□□□ -2.05
UBR4-204ENST00000375254 KRTAP19-8Q3LI54 63 aa2.25□□□□□ -2.05
UBR4-204ENST00000375254 KRTAP4-5Q9BYR2 181 aa2.24□□□□□ -2.05
UBR4-204ENST00000375254 MT1LQ93083 61 aa2.21□□□□□ -2.06
UBR4-204ENST00000375254 MT1GP13640 62 aa2.19□□□□□ -2.06
UBR4-204ENST00000375254 MT2AP02795 61 aa2.19□□□□□ -2.06
UBR4-204ENST00000375254 KRTAP19-2Q3LHN2 52 aa2.17□□□□□ -2.06
UBR4-204ENST00000375254 RYR3Q15413 4870 aa2.17□□□□□ -2.06
UBR4-204ENST00000375254 MT1HP80294 61 aa2.17□□□□□ -2.06
UBR4-204ENST00000375254 BIRC6Q9NR09 4857 aa2.17□□□□□ -2.06
UBR4-204ENST00000375254 KRTAP19-1Q8IUB9 90 aa2.16□□□□□ -2.06
UBR4-204ENST00000375254 LRP2P98164 4655 aa2.16□□□□□ -2.06
UBR4-204ENST00000375254 HYDINQ4G0P3 5121 aa2.16□□□□□ -2.06
UBR4-204ENST00000375254 PKHD1P08F94 4074 aa2.15□□□□□ -2.06
UBR4-204ENST00000375254 MT1XP80297 61 aa2.15□□□□□ -2.07
UBR4-204ENST00000375254 KMT2CQ8NEZ4 4911 aaKnown RBP2.15□□□□□ -2.07
UBR4-204ENST00000375254 MT1EP04732 61 aa2.15□□□□□ -2.07
UBR4-204ENST00000375254 KRTAP2-3P0C7H8 128 aa2.14□□□□□ -2.07
UBR4-204ENST00000375254 KRTAP2-4Q9BYR9 128 aa2.14□□□□□ -2.07
UBR4-204ENST00000375254 KRTAP2-1Q9BYU5 128 aa2.14□□□□□ -2.07
UBR4-204ENST00000375254 RYR2Q92736 4967 aa2.13□□□□□ -2.07
UBR4-204ENST00000375254 LCE3BQ5TA77 95 aa2.13□□□□□ -2.07
UBR4-204ENST00000375254 ABCA13Q86UQ4 5058 aa2.12□□□□□ -2.07
UBR4-204ENST00000375254 MT1FP04733 61 aa2.12□□□□□ -2.07
UBR4-204ENST00000375254 PRM1P04553 51 aa2.11□□□□□ -2.07
UBR4-204ENST00000375254 MT1AP04731 61 aa2.09□□□□□ -2.07
UBR4-204ENST00000375254 HERC1Q15751 4861 aa2.08□□□□□ -2.08
UBR4-204ENST00000375254 HERC2O95714 4834 aa2.07□□□□□ -2.08
UBR4-204ENST00000375254 UBR4Q5T4S7 5183 aa2.06□□□□□ -2.08
UBR4-204ENST00000375254 SYNE2Q8WXH0 6885 aaKnown RBP2.06□□□□□ -2.08
UBR4-204ENST00000375254 MUC17Q685J3 4493 aa2.04□□□□□ -2.08
UBR4-204ENST00000375254 LCE2CQ5TA81 110 aa2.04□□□□□ -2.08
UBR4-204ENST00000375254 SPRR2AP35326 72 aa2.04□□□□□ -2.08
UBR4-204ENST00000375254 SPRR2FQ96RM1 72 aa2.04□□□□□ -2.08
UBR4-204ENST00000375254 FAT4Q6V0I7 4981 aa2.02□□□□□ -2.09
UBR4-204ENST00000375254 RNF213Q63HN8 5207 aa2.02□□□□□ -2.09
UBR4-204ENST00000375254 EPPK1P58107 5090 aaKnown RBP2□□□□□ -2.09
UBR4-204ENST00000375254 FSIP2Q5CZC0 6907 aa1.99□□□□□ -2.09
UBR4-204ENST00000375254 MT1BP07438 61 aa1.99□□□□□ -2.09
UBR4-204ENST00000375254 SPRR2BP35325 72 aa1.98□□□□□ -2.09
UBR4-204ENST00000375254 PCLOQ9Y6V0 5065 aa1.98□□□□□ -2.09
UBR4-204ENST00000375254 LPAP08519 4548 aa1.97□□□□□ -2.09
UBR4-204ENST00000375254 KRTAP19-3Q7Z4W3 81 aa1.97□□□□□ -2.09
UBR4-204ENST00000375254 MT1MQ8N339 61 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 1022.8 ms