RNA–Protein interactions for RNA: ENST00000374747.9

NPLOC4-202, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 2 BASIC

Gene NPLOC4, Length 5,538 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-202ENST00000374747 HYDINQ4G0P3 5121 aa6.5□□□□□ -1.37
NPLOC4-202ENST00000374747 P0C880 135 aa6.5□□□□□ -1.37
NPLOC4-202ENST00000374747 DYNC2H1Q8NCM8 4307 aaKnown RBP6.48□□□□□ -1.37
NPLOC4-202ENST00000374747 XP32Q5T750 250 aa6.45□□□□□ -1.38
NPLOC4-202ENST00000374747 DNAH5Q8TE73 4624 aa6.44□□□□□ -1.38
NPLOC4-202ENST00000374747 PKHD1P08F94 4074 aa6.42□□□□□ -1.38
NPLOC4-202ENST00000374747 FAT1Q14517 4588 aa6.41□□□□□ -1.38
NPLOC4-202ENST00000374747 KRTAP10-8P60410 259 aa6.41□□□□□ -1.38
NPLOC4-202ENST00000374747 TPRXLQ17RH7 258 aa6.4□□□□□ -1.38
NPLOC4-202ENST00000374747 KRTAP13-3Q3SY46 172 aa6.4□□□□□ -1.38
NPLOC4-202ENST00000374747 FAT2Q9NYQ8 4349 aa6.39□□□□□ -1.39
NPLOC4-202ENST00000374747 VPS13BQ7Z7G8 4022 aa6.38□□□□□ -1.39
NPLOC4-202ENST00000374747 ALMS1Q8TCU4 4167 aa6.31□□□□□ -1.4
NPLOC4-202ENST00000374747 MYCBP2O75592 4640 aa6.28□□□□□ -1.4
NPLOC4-202ENST00000374747 PKD1P98161 4303 aa6.23□□□□□ -1.41
NPLOC4-202ENST00000374747 DYNC1H1Q14204 4646 aaKnown RBP6.21□□□□□ -1.42
NPLOC4-202ENST00000374747 KMT2CQ8NEZ4 4911 aaKnown RBP6.2□□□□□ -1.42
NPLOC4-202ENST00000374747 LRP1Q07954 4544 aaKnown RBP6.17□□□□□ -1.42
NPLOC4-202ENST00000374747 PRO2289Q9P1D8 64 aa6.16□□□□□ -1.42
NPLOC4-202ENST00000374747 KRTAP10-10P60014 251 aa6.16□□□□□ -1.42
NPLOC4-202ENST00000374747 SACSQ9NZJ4 4579 aa6.13□□□□□ -1.43
NPLOC4-202ENST00000374747 APOBP04114 4563 aaKnown RBP6.12□□□□□ -1.43
NPLOC4-202ENST00000374747 KRTAP12-2P59991 146 aa6.1□□□□□ -1.43
NPLOC4-202ENST00000374747 KIAA1109Q2LD37 5005 aa6.08□□□□□ -1.44
NPLOC4-202ENST00000374747 FAT3Q8TDW7 4589 aa6.06□□□□□ -1.44
NPLOC4-202ENST00000374747 KRTAP13-4Q3LI77 160 aa6.03□□□□□ -1.44
NPLOC4-202ENST00000374747 KRTAP3-1Q9BYR8 98 aa6□□□□□ -1.45
NPLOC4-202ENST00000374747 KRTAP12-1P59990 96 aa6□□□□□ -1.45
NPLOC4-202ENST00000374747 HSPG2P98160 4391 aa5.96□□□□□ -1.46
NPLOC4-202ENST00000374747 RYR2Q92736 4967 aa5.94□□□□□ -1.46
NPLOC4-202ENST00000374747 KRTAP10-4P60372 401 aaPredicted RBP5.94□□□□□ -1.46
NPLOC4-202ENST00000374747 MT1HL1P0DM35 61 aa5.93□□□□□ -1.46
NPLOC4-202ENST00000374747 RYR3Q15413 4870 aa5.91□□□□□ -1.46
NPLOC4-202ENST00000374747 LRP2P98164 4655 aa5.89□□□□□ -1.47
NPLOC4-202ENST00000374747 RYR1P21817 5038 aa5.86□□□□□ -1.47
NPLOC4-202ENST00000374747 PKHD1L1Q86WI1 4243 aa5.83□□□□□ -1.48
NPLOC4-202ENST00000374747 KRTAP10-6P60371 365 aaPredicted RBP5.78□□□□□ -1.48
NPLOC4-202ENST00000374747 KRTAP17-1Q9BYP8 105 aa5.76□□□□□ -1.49
NPLOC4-202ENST00000374747 KRTAP15-1Q3LI76 137 aa5.76□□□□□ -1.49
NPLOC4-202ENST00000374747 LPAP08519 4548 aa5.76□□□□□ -1.49
NPLOC4-202ENST00000374747 ABCA13Q86UQ4 5058 aa5.76□□□□□ -1.49
NPLOC4-202ENST00000374747 KRTAP4-5Q9BYR2 181 aa5.75□□□□□ -1.49
NPLOC4-202ENST00000374747 KRTAP3-3Q9BYR6 98 aa5.71□□□□□ -1.5
NPLOC4-202ENST00000374747 EPPK1P58107 5090 aaKnown RBP5.71□□□□□ -1.5
NPLOC4-202ENST00000374747 MUC2Q02817 5179 aa5.66□□□□□ -1.5
NPLOC4-202ENST00000374747 INE1O15225 51 aa5.65□□□□□ -1.5
NPLOC4-202ENST00000374747 TNXBP22105 4242 aa5.65□□□□□ -1.5
NPLOC4-202ENST00000374747 KRTAP3-2Q9BYR7 98 aa5.63□□□□□ -1.51
NPLOC4-202ENST00000374747 HERC2O95714 4834 aa5.48□□□□□ -1.53
NPLOC4-202ENST00000374747 KRTAP10-12P60413 245 aa5.44□□□□□ -1.54
NPLOC4-202ENST00000374747 FAT4Q6V0I7 4981 aa5.39□□□□□ -1.55
NPLOC4-202ENST00000374747 RNF213Q63HN8 5207 aa5.38□□□□□ -1.55
NPLOC4-202ENST00000374747 HERC1Q15751 4861 aa5.37□□□□□ -1.55
NPLOC4-202ENST00000374747 KRTAP23-1A1A580 65 aa5.35□□□□□ -1.55
NPLOC4-202ENST00000374747 KRTAP12-3P60328 96 aa5.33□□□□□ -1.56
NPLOC4-202ENST00000374747 CRCT1Q9UGL9 99 aa5.31□□□□□ -1.56
NPLOC4-202ENST00000374747 LORP23490 312 aaPredicted RBP5.31□□□□□ -1.56
NPLOC4-202ENST00000374747 KRTAP4-1Q9BYQ7 146 aa5.28□□□□□ -1.56
NPLOC4-202ENST00000374747 PCLOQ9Y6V0 5065 aa5.26□□□□□ -1.57
NPLOC4-202ENST00000374747 LCE3AQ5TA76 89 aa5.25□□□□□ -1.57
NPLOC4-202ENST00000374747 UBR4Q5T4S7 5183 aa5.17□□□□□ -1.58
NPLOC4-202ENST00000374747 MUC17Q685J3 4493 aa5.17□□□□□ -1.58
NPLOC4-202ENST00000374747 MT1HP80294 61 aa5.1□□□□□ -1.59
NPLOC4-202ENST00000374747 KRTAP19-2Q3LHN2 52 aa5.08□□□□□ -1.6
NPLOC4-202ENST00000374747 HMCN2Q8NDA2 5059 aa5.06□□□□□ -1.6
NPLOC4-202ENST00000374747 KRTAP10-5P60370 271 aa5.03□□□□□ -1.6
NPLOC4-202ENST00000374747 MT2AP02795 61 aa5□□□□□ -1.61
NPLOC4-202ENST00000374747 FLGP20930 4061 aaPredicted RBP4.99□□□□□ -1.61
NPLOC4-202ENST00000374747 BIRC6Q9NR09 4857 aa4.99□□□□□ -1.61
NPLOC4-202ENST00000374747 SPRR2GQ9BYE4 73 aa4.97□□□□□ -1.61
NPLOC4-202ENST00000374747 KRTAP8-1Q8IUC2 63 aa4.91□□□□□ -1.62
NPLOC4-202ENST00000374747 MT1FP04733 61 aa4.9□□□□□ -1.62
NPLOC4-202ENST00000374747 USH2AO75445 5202 aa4.81□□□□□ -1.64
NPLOC4-202ENST00000374747 LCE2CQ5TA81 110 aa4.79□□□□□ -1.64
NPLOC4-202ENST00000374747 KRTAP19-1Q8IUB9 90 aa4.74□□□□□ -1.65
NPLOC4-202ENST00000374747 KRTAP19-8Q3LI54 63 aa4.7□□□□□ -1.66
NPLOC4-202ENST00000374747 LCE3CQ5T5A8 94 aa4.64□□□□□ -1.67
NPLOC4-202ENST00000374747 KRTAP19-5Q3LI72 72 aa4.64□□□□□ -1.67
NPLOC4-202ENST00000374747 KMT2DO14686 5537 aa4.62□□□□□ -1.67
NPLOC4-202ENST00000374747 KRTAP9-8Q9BYQ0 159 aa4.62□□□□□ -1.67
NPLOC4-202ENST00000374747 FSIP2Q5CZC0 6907 aa4.57□□□□□ -1.68
NPLOC4-202ENST00000374747 KRTAP19-4Q3LI73 84 aa4.57□□□□□ -1.68
NPLOC4-202ENST00000374747 KRTAP10-7P60409 375 aaPredicted RBP4.56□□□□□ -1.68
NPLOC4-202ENST00000374747 MT1BP07438 61 aa4.53□□□□□ -1.68
NPLOC4-202ENST00000374747 SPRR2FQ96RM1 72 aa4.5□□□□□ -1.69
NPLOC4-202ENST00000374747 MT1XP80297 61 aa4.5□□□□□ -1.69
NPLOC4-202ENST00000374747 KRTAP9-3Q9BYQ3 159 aa4.5□□□□□ -1.69
NPLOC4-202ENST00000374747 SPRR5A0A1B0GTR4 108 aa4.48□□□□□ -1.69
NPLOC4-202ENST00000374747 DSTQ03001 7570 aaKnown RBP4.32□□□□□ -1.72
NPLOC4-202ENST00000374747 KRTAP12-4P60329 112 aa4.31□□□□□ -1.72
NPLOC4-202ENST00000374747 LCE3BQ5TA77 95 aa4.3□□□□□ -1.72
NPLOC4-202ENST00000374747 LCE2BO14633 110 aa4.29□□□□□ -1.72
NPLOC4-202ENST00000374747 OBSCNQ5VST9 7968 aa4.25□□□□□ -1.73
NPLOC4-202ENST00000374747 KRTAP4-8A0A0G2JLE6 195 aa4.24□□□□□ -1.73
NPLOC4-202ENST00000374747 KRTAP4-8Q9BYQ9 185 aa4.24□□□□□ -1.73
NPLOC4-202ENST00000374747 SPRR2EP22531 72 aa4.23□□□□□ -1.73
NPLOC4-202ENST00000374747 SPRR2BP35325 72 aa4.23□□□□□ -1.73
NPLOC4-202ENST00000374747 SPRR2AP35326 72 aa4.23□□□□□ -1.73
NPLOC4-202ENST00000374747 MT1GP13640 62 aa4.21□□□□□ -1.73
NPLOC4-202ENST00000374747 SYNE1Q8NF91 8797 aaKnown RBP4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms