RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 NBEAL2Q6ZNJ1 2754 aa1.9□□□□□ -2.11
USH2A-202ENST00000366942 KRTAP5-3Q6L8H2 238 aa1.9□□□□□ -2.11
USH2A-202ENST00000366942 CRCT1Q9UGL9 99 aa1.9□□□□□ -2.11
USH2A-202ENST00000366942 KRTAP9-2Q9BYQ4 174 aa1.89□□□□□ -2.11
USH2A-202ENST00000366942 KRTAP4-2Q9BYR5 136 aa1.88□□□□□ -2.11
USH2A-202ENST00000366942 COL7A1Q02388 2944 aa1.88□□□□□ -2.11
USH2A-202ENST00000366942 KRTAP13-4Q3LI77 160 aa1.88□□□□□ -2.11
USH2A-202ENST00000366942 FRAS1Q86XX4 4008 aa1.87□□□□□ -2.11
USH2A-202ENST00000366942 SPRR2FQ96RM1 72 aa1.87□□□□□ -2.11
USH2A-202ENST00000366942 KRTAP4-5Q9BYR2 181 aa1.87□□□□□ -2.11
USH2A-202ENST00000366942 TACC2O95359 2948 aa1.87□□□□□ -2.11
USH2A-202ENST00000366942 KRTAP12-2P59991 146 aa1.87□□□□□ -2.11
USH2A-202ENST00000366942 VWFP04275 2813 aa1.87□□□□□ -2.11
USH2A-202ENST00000366942 MXRA5Q9NR99 2828 aa1.86□□□□□ -2.11
USH2A-202ENST00000366942 KRTAP19-4Q3LI73 84 aa1.86□□□□□ -2.11
USH2A-202ENST00000366942 DNHD1Q96M86 4753 aa1.86□□□□□ -2.11
USH2A-202ENST00000366942 APCP25054 2843 aa1.86□□□□□ -2.11
USH2A-202ENST00000366942 KRTAP9-9Q9BYP9 154 aa1.85□□□□□ -2.11
USH2A-202ENST00000366942 KRTAP9-4Q9BYQ2 154 aa1.85□□□□□ -2.11
USH2A-202ENST00000366942 SPRR2EP22531 72 aa1.84□□□□□ -2.11
USH2A-202ENST00000366942 SPRR2BP35325 72 aa1.84□□□□□ -2.11
USH2A-202ENST00000366942 SPRR2AP35326 72 aa1.84□□□□□ -2.11
USH2A-202ENST00000366942 KRTAP9-6A0A140TA67 174 aa1.84□□□□□ -2.11
USH2A-202ENST00000366942 DNAH6Q9C0G6 4158 aa1.84□□□□□ -2.12
USH2A-202ENST00000366942 KRTAP9-8Q9BYQ0 159 aa1.83□□□□□ -2.12
USH2A-202ENST00000366942 SPRR2DP22532 72 aa1.82□□□□□ -2.12
USH2A-202ENST00000366942 KRTAP12-4P60329 112 aa1.82□□□□□ -2.12
USH2A-202ENST00000366942 MEGF8Q7Z7M0 2845 aa1.8□□□□□ -2.12
USH2A-202ENST00000366942 GPR98Q8WXG9 6306 aa1.8□□□□□ -2.12
USH2A-202ENST00000366942 SPRR5A0A1B0GTR4 108 aa1.8□□□□□ -2.12
USH2A-202ENST00000366942 KRTAP10-4P60372 401 aaPredicted RBP1.79□□□□□ -2.12
USH2A-202ENST00000366942 PKD1P98161 4303 aa1.79□□□□□ -2.12
USH2A-202ENST00000366942 LCE2AQ5TA79 106 aaPredicted RBP1.78□□□□□ -2.12
USH2A-202ENST00000366942 DNAH9Q9NYC9 4486 aa1.78□□□□□ -2.12
USH2A-202ENST00000366942 PKHD1P08F94 4074 aa1.78□□□□□ -2.12
USH2A-202ENST00000366942 HECTD4Q9Y4D8 3996 aa1.78□□□□□ -2.13
USH2A-202ENST00000366942 KRTAP12-3P60328 96 aa1.77□□□□□ -2.13
USH2A-202ENST00000366942 ZANQ9Y493 2812 aa1.77□□□□□ -2.13
USH2A-202ENST00000366942 TGP01266 2768 aa1.76□□□□□ -2.13
USH2A-202ENST00000366942 FAT2Q9NYQ8 4349 aa1.76□□□□□ -2.13
USH2A-202ENST00000366942 KRTAP4-8A0A0G2JLE6 195 aa1.76□□□□□ -2.13
USH2A-202ENST00000366942 KRTAP4-12Q9BQ66 201 aa1.76□□□□□ -2.13
USH2A-202ENST00000366942 FAT3Q8TDW7 4589 aa1.76□□□□□ -2.13
USH2A-202ENST00000366942 DNAH17Q9UFH2 4485 aa1.76□□□□□ -2.13
USH2A-202ENST00000366942 KRTAP20-1Q3LI63 56 aa1.76□□□□□ -2.13
USH2A-202ENST00000366942 KRTAP4-7Q9BYR0 210 aa1.75□□□□□ -2.13
USH2A-202ENST00000366942 DNAH2Q9P225 4427 aa1.74□□□□□ -2.13
USH2A-202ENST00000366942 HUWE1Q7Z6Z7 4374 aaKnown RBP1.74□□□□□ -2.13
USH2A-202ENST00000366942 DNAH11Q96DT5 4516 aa1.73□□□□□ -2.13
USH2A-202ENST00000366942 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.73□□□□□ -2.13
USH2A-202ENST00000366942 PKHD1L1Q86WI1 4243 aa1.73□□□□□ -2.13
USH2A-202ENST00000366942 VPS13DQ5THJ4 4388 aa1.72□□□□□ -2.13
USH2A-202ENST00000366942 KRTAP5-2Q701N4 177 aa1.72□□□□□ -2.13
USH2A-202ENST00000366942 STARD9Q9P2P6 4700 aa1.72□□□□□ -2.13
USH2A-202ENST00000366942 FBN1P35555 2871 aaKnown RBP1.72□□□□□ -2.13
USH2A-202ENST00000366942 MT1HP80294 61 aa1.71□□□□□ -2.14
USH2A-202ENST00000366942 VPS13BQ7Z7G8 4022 aa1.71□□□□□ -2.14
USH2A-202ENST00000366942 HYDINQ4G0P3 5121 aa1.7□□□□□ -2.14
USH2A-202ENST00000366942 KMT2CQ8NEZ4 4911 aaKnown RBP1.7□□□□□ -2.14
USH2A-202ENST00000366942 ALMS1Q8TCU4 4167 aa1.69□□□□□ -2.14
USH2A-202ENST00000366942 SACSQ9NZJ4 4579 aa1.69□□□□□ -2.14
USH2A-202ENST00000366942 KRTAP9-7A8MTY7 169 aa1.69□□□□□ -2.14
USH2A-202ENST00000366942 KRTAP10-5P60370 271 aa1.69□□□□□ -2.14
USH2A-202ENST00000366942 RYR3Q15413 4870 aa1.68□□□□□ -2.14
USH2A-202ENST00000366942 KMT2AQ03164 3969 aa1.68□□□□□ -2.14
USH2A-202ENST00000366942 KRTAP12-1P59990 96 aa1.68□□□□□ -2.14
USH2A-202ENST00000366942 DNAH8Q96JB1 4490 aa1.68□□□□□ -2.14
USH2A-202ENST00000366942 PLECQ15149 4684 aaKnown RBP1.67□□□□□ -2.14
USH2A-202ENST00000366942 MT2AP02795 61 aa1.67□□□□□ -2.14
USH2A-202ENST00000366942 KRTAP3-1Q9BYR8 98 aa1.65□□□□□ -2.14
USH2A-202ENST00000366942 KRTAP2-3P0C7H8 128 aa1.65□□□□□ -2.15
USH2A-202ENST00000366942 KRTAP2-4Q9BYR9 128 aa1.65□□□□□ -2.15
USH2A-202ENST00000366942 DNAH10Q8IVF4 4471 aa1.65□□□□□ -2.15
USH2A-202ENST00000366942 DNAH5Q8TE73 4624 aa1.65□□□□□ -2.15
USH2A-202ENST00000366942 RYR2Q92736 4967 aa1.65□□□□□ -2.15
USH2A-202ENST00000366942 HMCN1Q96RW7 5635 aa1.63□□□□□ -2.15
USH2A-202ENST00000366942 INE1O15225 51 aa1.63□□□□□ -2.15
USH2A-202ENST00000366942 MYCBP2O75592 4640 aa1.61□□□□□ -2.15
USH2A-202ENST00000366942 KRTAP4-9Q9BYQ8 210 aa1.6□□□□□ -2.15
USH2A-202ENST00000366942 HSPG2P98160 4391 aa1.6□□□□□ -2.15
USH2A-202ENST00000366942 PCLOQ9Y6V0 5065 aa1.6□□□□□ -2.15
USH2A-202ENST00000366942 MT1GP13640 62 aa1.59□□□□□ -2.15
USH2A-202ENST00000366942 KRTAP19-1Q8IUB9 90 aa1.59□□□□□ -2.15
USH2A-202ENST00000366942 SPRR2GQ9BYE4 73 aa1.59□□□□□ -2.15
USH2A-202ENST00000366942 LRP2P98164 4655 aa1.59□□□□□ -2.15
USH2A-202ENST00000366942 MT1FP04733 61 aa1.59□□□□□ -2.16
USH2A-202ENST00000366942 TNXBP22105 4242 aa1.59□□□□□ -2.16
USH2A-202ENST00000366942 APOBP04114 4563 aaKnown RBP1.58□□□□□ -2.16
USH2A-202ENST00000366942 KRTAP6-3Q3LI67 103 aa1.58□□□□□ -2.16
USH2A-202ENST00000366942 DYNC1H1Q14204 4646 aaKnown RBP1.58□□□□□ -2.16
USH2A-202ENST00000366942 LCE3BQ5TA77 95 aa1.57□□□□□ -2.16
USH2A-202ENST00000366942 LCE3AQ5TA76 89 aa1.57□□□□□ -2.16
USH2A-202ENST00000366942 KRTAP2-2Q9BYT5 123 aa1.57□□□□□ -2.16
USH2A-202ENST00000366942 KRTAP2-1Q9BYU5 128 aa1.57□□□□□ -2.16
USH2A-202ENST00000366942 EPPK1P58107 5090 aaKnown RBP1.56□□□□□ -2.16
USH2A-202ENST00000366942 RYR1P21817 5038 aa1.55□□□□□ -2.16
USH2A-202ENST00000366942 HERC1Q15751 4861 aa1.54□□□□□ -2.16
USH2A-202ENST00000366942 MACF1Q9UPN3 7388 aaKnown RBP1.52□□□□□ -2.17
USH2A-202ENST00000366942 BIRC6Q9NR09 4857 aa1.52□□□□□ -2.17
USH2A-202ENST00000366942 KRTAP19-8Q3LI54 63 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 246.8 ms