RNA–Protein interactions for RNA: ENST00000360565.7

SCAF1-201, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS P2 TSL 2 BASIC

Gene SCAF1, Length 4,306 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-201ENST00000360565 ANK2Q01484 3957 aa7.65□□□□□ -1.19
SCAF1-201ENST00000360565 VPS13DQ5THJ4 4388 aa7.62□□□□□ -1.19
SCAF1-201ENST00000360565 STARD9Q9P2P6 4700 aa7.61□□□□□ -1.19
SCAF1-201ENST00000360565 KRTAP4-5Q9BYR2 181 aa7.6□□□□□ -1.19
SCAF1-201ENST00000360565 DNAH17Q9UFH2 4485 aa7.56□□□□□ -1.2
SCAF1-201ENST00000360565 PRKDCP78527 4128 aaKnown RBP7.55□□□□□ -1.2
SCAF1-201ENST00000360565 FAT1Q14517 4588 aa7.53□□□□□ -1.2
SCAF1-201ENST00000360565 LRP1BQ9NZR2 4599 aa7.48□□□□□ -1.21
SCAF1-201ENST00000360565 PRO2289Q9P1D8 64 aa7.48□□□□□ -1.21
SCAF1-201ENST00000360565 ALMS1Q8TCU4 4167 aa7.47□□□□□ -1.21
SCAF1-201ENST00000360565 DNAH2Q9P225 4427 aa7.44□□□□□ -1.22
SCAF1-201ENST00000360565 DYNC1H1Q14204 4646 aaKnown RBP7.43□□□□□ -1.22
SCAF1-201ENST00000360565 DNAH8Q96JB1 4490 aa7.42□□□□□ -1.22
SCAF1-201ENST00000360565 KMT2AQ03164 3969 aa7.39□□□□□ -1.23
SCAF1-201ENST00000360565 LYSTQ99698 3801 aa7.38□□□□□ -1.23
SCAF1-201ENST00000360565 KRTAP15-1Q3LI76 137 aa7.34□□□□□ -1.23
SCAF1-201ENST00000360565 LORP23490 312 aaPredicted RBP7.3□□□□□ -1.24
SCAF1-201ENST00000360565 DNAH3Q8TD57 4116 aa7.3□□□□□ -1.24
SCAF1-201ENST00000360565 CMYA5Q8N3K9 4069 aa7.3□□□□□ -1.24
SCAF1-201ENST00000360565 RYR1P21817 5038 aa7.23□□□□□ -1.25
SCAF1-201ENST00000360565 MYCBP2O75592 4640 aa7.22□□□□□ -1.25
SCAF1-201ENST00000360565 DYNC2H1Q8NCM8 4307 aaKnown RBP7.21□□□□□ -1.26
SCAF1-201ENST00000360565 VPS13BQ7Z7G8 4022 aa7.19□□□□□ -1.26
SCAF1-201ENST00000360565 DNAH7Q8WXX0 4024 aa7.17□□□□□ -1.26
SCAF1-201ENST00000360565 SACSQ9NZJ4 4579 aa7.17□□□□□ -1.26
SCAF1-201ENST00000360565 KIAA1109Q2LD37 5005 aa7.14□□□□□ -1.27
SCAF1-201ENST00000360565 FAT2Q9NYQ8 4349 aa7.13□□□□□ -1.27
SCAF1-201ENST00000360565 KRTAP4-1Q9BYQ7 146 aa7.12□□□□□ -1.27
SCAF1-201ENST00000360565 FRAS1Q86XX4 4008 aa7.1□□□□□ -1.27
SCAF1-201ENST00000360565 DNAH6Q9C0G6 4158 aa7.06□□□□□ -1.28
SCAF1-201ENST00000360565 APOBP04114 4563 aaKnown RBP7.05□□□□□ -1.28
SCAF1-201ENST00000360565 HECTD4Q9Y4D8 3996 aa7.03□□□□□ -1.28
SCAF1-201ENST00000360565 LRP1Q07954 4544 aaKnown RBP7.01□□□□□ -1.29
SCAF1-201ENST00000360565 HYDINQ4G0P3 5121 aa6.97□□□□□ -1.29
SCAF1-201ENST00000360565 RYR3Q15413 4870 aa6.96□□□□□ -1.3
SCAF1-201ENST00000360565 KRTAP10-12P60413 245 aa6.95□□□□□ -1.3
SCAF1-201ENST00000360565 FAT3Q8TDW7 4589 aa6.94□□□□□ -1.3
SCAF1-201ENST00000360565 KRTAP17-1Q9BYP8 105 aa6.92□□□□□ -1.3
SCAF1-201ENST00000360565 LCE3AQ5TA76 89 aa6.88□□□□□ -1.31
SCAF1-201ENST00000360565 KRTAP23-1A1A580 65 aa6.87□□□□□ -1.31
SCAF1-201ENST00000360565 KMT2CQ8NEZ4 4911 aaKnown RBP6.87□□□□□ -1.31
SCAF1-201ENST00000360565 PKHD1P08F94 4074 aa6.87□□□□□ -1.31
SCAF1-201ENST00000360565 KRTAP12-3P60328 96 aa6.84□□□□□ -1.32
SCAF1-201ENST00000360565 RYR2Q92736 4967 aa6.71□□□□□ -1.33
SCAF1-201ENST00000360565 LRP2P98164 4655 aa6.71□□□□□ -1.34
SCAF1-201ENST00000360565 MT1HP80294 61 aa6.69□□□□□ -1.34
SCAF1-201ENST00000360565 MT2AP02795 61 aa6.65□□□□□ -1.34
SCAF1-201ENST00000360565 SPRR2GQ9BYE4 73 aa6.65□□□□□ -1.34
SCAF1-201ENST00000360565 MT1FP04733 61 aa6.57□□□□□ -1.36
SCAF1-201ENST00000360565 HERC2O95714 4834 aa6.57□□□□□ -1.36
SCAF1-201ENST00000360565 INE1O15225 51 aa6.56□□□□□ -1.36
SCAF1-201ENST00000360565 PKD1P98161 4303 aa6.52□□□□□ -1.37
SCAF1-201ENST00000360565 HSPG2P98160 4391 aa6.5□□□□□ -1.37
SCAF1-201ENST00000360565 CRCT1Q9UGL9 99 aa6.47□□□□□ -1.37
SCAF1-201ENST00000360565 EPPK1P58107 5090 aaKnown RBP6.47□□□□□ -1.37
SCAF1-201ENST00000360565 KRTAP19-1Q8IUB9 90 aa6.43□□□□□ -1.38
SCAF1-201ENST00000360565 LPAP08519 4548 aa6.34□□□□□ -1.39
SCAF1-201ENST00000360565 KRTAP8-1Q8IUC2 63 aa6.33□□□□□ -1.4
SCAF1-201ENST00000360565 BIRC6Q9NR09 4857 aa6.29□□□□□ -1.4
SCAF1-201ENST00000360565 KRTAP19-8Q3LI54 63 aa6.24□□□□□ -1.41
SCAF1-201ENST00000360565 ABCA13Q86UQ4 5058 aa6.23□□□□□ -1.41
SCAF1-201ENST00000360565 LCE2CQ5TA81 110 aa6.22□□□□□ -1.41
SCAF1-201ENST00000360565 KRTAP19-5Q3LI72 72 aa6.21□□□□□ -1.42
SCAF1-201ENST00000360565 PCLOQ9Y6V0 5065 aa6.19□□□□□ -1.42
SCAF1-201ENST00000360565 TNXBP22105 4242 aa6.19□□□□□ -1.42
SCAF1-201ENST00000360565 PKHD1L1Q86WI1 4243 aa6.17□□□□□ -1.42
SCAF1-201ENST00000360565 KRTAP10-7P60409 375 aaPredicted RBP6.16□□□□□ -1.42
SCAF1-201ENST00000360565 KRTAP9-8Q9BYQ0 159 aa6.16□□□□□ -1.42
SCAF1-201ENST00000360565 HERC1Q15751 4861 aa6.15□□□□□ -1.42
SCAF1-201ENST00000360565 KRTAP19-2Q3LHN2 52 aa6.14□□□□□ -1.43
SCAF1-201ENST00000360565 MT1XP80297 61 aa6.13□□□□□ -1.43
SCAF1-201ENST00000360565 MT1BP07438 61 aa6.13□□□□□ -1.43
SCAF1-201ENST00000360565 KRTAP10-5P60370 271 aa6.08□□□□□ -1.44
SCAF1-201ENST00000360565 LCE3CQ5T5A8 94 aa6.08□□□□□ -1.44
SCAF1-201ENST00000360565 MUC17Q685J3 4493 aa6.07□□□□□ -1.44
SCAF1-201ENST00000360565 MUC2Q02817 5179 aa6□□□□□ -1.45
SCAF1-201ENST00000360565 FLGP20930 4061 aaPredicted RBP5.97□□□□□ -1.45
SCAF1-201ENST00000360565 RNF213Q63HN8 5207 aa5.96□□□□□ -1.45
SCAF1-201ENST00000360565 SPRR5A0A1B0GTR4 108 aa5.96□□□□□ -1.46
SCAF1-201ENST00000360565 KRTAP9-3Q9BYQ3 159 aa5.95□□□□□ -1.46
SCAF1-201ENST00000360565 KRTAP4-8A0A0G2JLE6 195 aa5.88□□□□□ -1.47
SCAF1-201ENST00000360565 KRTAP4-8Q9BYQ9 185 aa5.88□□□□□ -1.47
SCAF1-201ENST00000360565 UBR4Q5T4S7 5183 aa5.87□□□□□ -1.47
SCAF1-201ENST00000360565 SPRR2FQ96RM1 72 aa5.85□□□□□ -1.47
SCAF1-201ENST00000360565 FSIP2Q5CZC0 6907 aa5.82□□□□□ -1.48
SCAF1-201ENST00000360565 KRTAP19-4Q3LI73 84 aa5.78□□□□□ -1.48
SCAF1-201ENST00000360565 FAT4Q6V0I7 4981 aa5.78□□□□□ -1.48
SCAF1-201ENST00000360565 LCE2BO14633 110 aa5.73□□□□□ -1.49
SCAF1-201ENST00000360565 HMCN2Q8NDA2 5059 aa5.66□□□□□ -1.5
SCAF1-201ENST00000360565 MT1GP13640 62 aa5.58□□□□□ -1.52
SCAF1-201ENST00000360565 KRTAP4-7Q9BYR0 210 aa5.58□□□□□ -1.52
SCAF1-201ENST00000360565 SYNE1Q8NF91 8797 aaKnown RBP5.5□□□□□ -1.53
SCAF1-201ENST00000360565 MT1LQ93083 61 aa5.47□□□□□ -1.53
SCAF1-201ENST00000360565 LCE3BQ5TA77 95 aa5.46□□□□□ -1.53
SCAF1-201ENST00000360565 MT1EP04732 61 aa5.44□□□□□ -1.54
SCAF1-201ENST00000360565 KRTAP12-4P60329 112 aa5.41□□□□□ -1.54
SCAF1-201ENST00000360565 KRTAP19-3Q7Z4W3 81 aa5.35□□□□□ -1.55
SCAF1-201ENST00000360565 SPRR2EP22531 72 aa5.35□□□□□ -1.55
SCAF1-201ENST00000360565 SPRR2BP35325 72 aa5.35□□□□□ -1.55
SCAF1-201ENST00000360565 SPRR2AP35326 72 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 136 ms