RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 KRTAP10-5P60370 271 aa4.5□□□□□ -1.69
CLIP1-202ENST00000358808 DNAH1Q9P2D7 4330 aa4.5□□□□□ -1.69
CLIP1-202ENST00000358808 KRTAP3-2Q9BYR7 98 aa4.45□□□□□ -1.7
CLIP1-202ENST00000358808 KRTAP8-1Q8IUC2 63 aa4.43□□□□□ -1.7
CLIP1-202ENST00000358808 LCE3AQ5TA76 89 aa4.42□□□□□ -1.7
CLIP1-202ENST00000358808 KRTAP3-3Q9BYR6 98 aa4.42□□□□□ -1.7
CLIP1-202ENST00000358808 DNAH11Q96DT5 4516 aa4.42□□□□□ -1.7
CLIP1-202ENST00000358808 VPS13DQ5THJ4 4388 aa4.41□□□□□ -1.7
CLIP1-202ENST00000358808 DNAH6Q9C0G6 4158 aa4.41□□□□□ -1.7
CLIP1-202ENST00000358808 LORP23490 312 aaPredicted RBP4.4□□□□□ -1.7
CLIP1-202ENST00000358808 DNAH10Q8IVF4 4471 aa4.39□□□□□ -1.71
CLIP1-202ENST00000358808 CMYA5Q8N3K9 4069 aa4.39□□□□□ -1.71
CLIP1-202ENST00000358808 PLECQ15149 4684 aaKnown RBP4.38□□□□□ -1.71
CLIP1-202ENST00000358808 DNAH3Q8TD57 4116 aa4.36□□□□□ -1.71
CLIP1-202ENST00000358808 DYNC2H1Q8NCM8 4307 aaKnown RBP4.35□□□□□ -1.71
CLIP1-202ENST00000358808 CSMD3Q7Z407 3707 aa4.34□□□□□ -1.71
CLIP1-202ENST00000358808 DNAH17Q9UFH2 4485 aa4.34□□□□□ -1.72
CLIP1-202ENST00000358808 DNAH5Q8TE73 4624 aa4.33□□□□□ -1.72
CLIP1-202ENST00000358808 DNHD1Q96M86 4753 aa4.32□□□□□ -1.72
CLIP1-202ENST00000358808 DYNC1H1Q14204 4646 aaKnown RBP4.3□□□□□ -1.72
CLIP1-202ENST00000358808 STARD9Q9P2P6 4700 aa4.27□□□□□ -1.73
CLIP1-202ENST00000358808 FAT2Q9NYQ8 4349 aa4.27□□□□□ -1.73
CLIP1-202ENST00000358808 PRKDCP78527 4128 aaKnown RBP4.26□□□□□ -1.73
CLIP1-202ENST00000358808 KRTAP23-1A1A580 65 aa4.25□□□□□ -1.73
CLIP1-202ENST00000358808 DNAH2Q9P225 4427 aa4.25□□□□□ -1.73
CLIP1-202ENST00000358808 LRP1BQ9NZR2 4599 aa4.2□□□□□ -1.74
CLIP1-202ENST00000358808 DNAH8Q96JB1 4490 aa4.19□□□□□ -1.74
CLIP1-202ENST00000358808 DNAH7Q8WXX0 4024 aa4.15□□□□□ -1.75
CLIP1-202ENST00000358808 KRTAP10-7P60409 375 aaPredicted RBP4.14□□□□□ -1.75
CLIP1-202ENST00000358808 SACSQ9NZJ4 4579 aa4.12□□□□□ -1.75
CLIP1-202ENST00000358808 SPRR2FQ96RM1 72 aa4.1□□□□□ -1.75
CLIP1-202ENST00000358808 MT1HP80294 61 aa4.08□□□□□ -1.76
CLIP1-202ENST00000358808 KMT2AQ03164 3969 aa4.07□□□□□ -1.76
CLIP1-202ENST00000358808 KRTAP4-1Q9BYQ7 146 aa4.06□□□□□ -1.76
CLIP1-202ENST00000358808 RYR2Q92736 4967 aa4.04□□□□□ -1.76
CLIP1-202ENST00000358808 BIRC6Q9NR09 4857 aa4.01□□□□□ -1.77
CLIP1-202ENST00000358808 KRTAP17-1Q9BYP8 105 aa4□□□□□ -1.77
CLIP1-202ENST00000358808 LYSTQ99698 3801 aa4□□□□□ -1.77
CLIP1-202ENST00000358808 APOBP04114 4563 aaKnown RBP4□□□□□ -1.77
CLIP1-202ENST00000358808 RYR3Q15413 4870 aa3.98□□□□□ -1.77
CLIP1-202ENST00000358808 FAT1Q14517 4588 aa3.97□□□□□ -1.77
CLIP1-202ENST00000358808 RYR1P21817 5038 aa3.96□□□□□ -1.78
CLIP1-202ENST00000358808 MT2AP02795 61 aa3.96□□□□□ -1.78
CLIP1-202ENST00000358808 KRTAP19-5Q3LI72 72 aa3.92□□□□□ -1.78
CLIP1-202ENST00000358808 VPS13BQ7Z7G8 4022 aa3.92□□□□□ -1.78
CLIP1-202ENST00000358808 SPRR2EP22531 72 aa3.91□□□□□ -1.78
CLIP1-202ENST00000358808 SPRR2BP35325 72 aa3.91□□□□□ -1.78
CLIP1-202ENST00000358808 SPRR2AP35326 72 aa3.91□□□□□ -1.78
CLIP1-202ENST00000358808 HSPG2P98160 4391 aa3.91□□□□□ -1.78
CLIP1-202ENST00000358808 HECTD4Q9Y4D8 3996 aa3.91□□□□□ -1.78
CLIP1-202ENST00000358808 FAT3Q8TDW7 4589 aa3.88□□□□□ -1.79
CLIP1-202ENST00000358808 PKHD1L1Q86WI1 4243 aa3.87□□□□□ -1.79
CLIP1-202ENST00000358808 HERC1Q15751 4861 aa3.87□□□□□ -1.79
CLIP1-202ENST00000358808 MT1FP04733 61 aa3.86□□□□□ -1.79
CLIP1-202ENST00000358808 SPRR2GQ9BYE4 73 aa3.86□□□□□ -1.79
CLIP1-202ENST00000358808 HYDINQ4G0P3 5121 aa3.86□□□□□ -1.79
CLIP1-202ENST00000358808 LCE3CQ5T5A8 94 aa3.86□□□□□ -1.79
CLIP1-202ENST00000358808 FRAS1Q86XX4 4008 aa3.85□□□□□ -1.79
CLIP1-202ENST00000358808 PKD1P98161 4303 aa3.8□□□□□ -1.8
CLIP1-202ENST00000358808 SPRR2DP22532 72 aa3.8□□□□□ -1.8
CLIP1-202ENST00000358808 LCE3BQ5TA77 95 aa3.79□□□□□ -1.8
CLIP1-202ENST00000358808 KIAA1109Q2LD37 5005 aa3.76□□□□□ -1.81
CLIP1-202ENST00000358808 MYCBP2O75592 4640 aa3.72□□□□□ -1.81
CLIP1-202ENST00000358808 HERC2O95714 4834 aa3.72□□□□□ -1.81
CLIP1-202ENST00000358808 KRTAP12-4P60329 112 aa3.71□□□□□ -1.82
CLIP1-202ENST00000358808 MUC17Q685J3 4493 aa3.71□□□□□ -1.82
CLIP1-202ENST00000358808 LCE2BO14633 110 aa3.7□□□□□ -1.82
CLIP1-202ENST00000358808 PKHD1P08F94 4074 aa3.69□□□□□ -1.82
CLIP1-202ENST00000358808 KMT2CQ8NEZ4 4911 aaKnown RBP3.67□□□□□ -1.82
CLIP1-202ENST00000358808 KRTAP19-4Q3LI73 84 aa3.67□□□□□ -1.82
CLIP1-202ENST00000358808 TNXBP22105 4242 aa3.66□□□□□ -1.82
CLIP1-202ENST00000358808 LRP1Q07954 4544 aaKnown RBP3.65□□□□□ -1.82
CLIP1-202ENST00000358808 MT1GP13640 62 aa3.65□□□□□ -1.83
CLIP1-202ENST00000358808 LCE2CQ5TA81 110 aa3.61□□□□□ -1.83
CLIP1-202ENST00000358808 KRTAP19-8Q3LI54 63 aa3.6□□□□□ -1.83
CLIP1-202ENST00000358808 KRTAP9-8Q9BYQ0 159 aa3.59□□□□□ -1.83
CLIP1-202ENST00000358808 EPPK1P58107 5090 aaKnown RBP3.57□□□□□ -1.84
CLIP1-202ENST00000358808 KRTAP19-1Q8IUB9 90 aa3.53□□□□□ -1.84
CLIP1-202ENST00000358808 KRTAP9-3Q9BYQ3 159 aa3.53□□□□□ -1.84
CLIP1-202ENST00000358808 LCE3DQ9BYE3 92 aa3.53□□□□□ -1.84
CLIP1-202ENST00000358808 PCLOQ9Y6V0 5065 aa3.52□□□□□ -1.85
CLIP1-202ENST00000358808 LPAP08519 4548 aa3.51□□□□□ -1.85
CLIP1-202ENST00000358808 KRTAP9-2Q9BYQ4 174 aa3.5□□□□□ -1.85
CLIP1-202ENST00000358808 LCE2DQ5TA82 110 aaPredicted RBP3.49□□□□□ -1.85
CLIP1-202ENST00000358808 MT1XP80297 61 aa3.49□□□□□ -1.85
CLIP1-202ENST00000358808 MT1BP07438 61 aa3.47□□□□□ -1.85
CLIP1-202ENST00000358808 KRTAP19-2Q3LHN2 52 aa3.46□□□□□ -1.86
CLIP1-202ENST00000358808 ABCA13Q86UQ4 5058 aa3.46□□□□□ -1.86
CLIP1-202ENST00000358808 LCE3EQ5T5B0 92 aa3.45□□□□□ -1.86
CLIP1-202ENST00000358808 KRTAP4-8A0A0G2JLE6 195 aa3.4□□□□□ -1.87
CLIP1-202ENST00000358808 KRTAP4-8Q9BYQ9 185 aa3.4□□□□□ -1.87
CLIP1-202ENST00000358808 KRTAP9-6A0A140TA67 174 aa3.39□□□□□ -1.87
CLIP1-202ENST00000358808 LRP2P98164 4655 aa3.39□□□□□ -1.87
CLIP1-202ENST00000358808 SPRR5A0A1B0GTR4 108 aa3.39□□□□□ -1.87
CLIP1-202ENST00000358808 LCE2AQ5TA79 106 aaPredicted RBP3.39□□□□□ -1.87
CLIP1-202ENST00000358808 MT4P47944 62 aa3.38□□□□□ -1.87
CLIP1-202ENST00000358808 SYNE1Q8NF91 8797 aaKnown RBP3.33□□□□□ -1.88
CLIP1-202ENST00000358808 KRTAP19-6Q3LI70 58 aa3.33□□□□□ -1.88
CLIP1-202ENST00000358808 FLGP20930 4061 aaPredicted RBP3.32□□□□□ -1.88
CLIP1-202ENST00000358808 LCE1BQ5T7P3 118 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms