RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 HECTD4Q9Y4D8 3996 aa2.73□□□□□ -1.97
UPF2-201ENST00000356352 NF1P21359 2839 aa2.72□□□□□ -1.97
UPF2-201ENST00000356352 KRTAP8-1Q8IUC2 63 aa2.72□□□□□ -1.97
UPF2-201ENST00000356352 HUWE1Q7Z6Z7 4374 aaKnown RBP2.72□□□□□ -1.97
UPF2-201ENST00000356352 DNAH17Q9UFH2 4485 aa2.71□□□□□ -1.98
UPF2-201ENST00000356352 OTOGQ6ZRI0 2925 aa2.71□□□□□ -1.98
UPF2-201ENST00000356352 PKHD1P08F94 4074 aa2.7□□□□□ -1.98
UPF2-201ENST00000356352 PKHD1L1Q86WI1 4243 aa2.7□□□□□ -1.98
UPF2-201ENST00000356352 MXRA5Q9NR99 2828 aa2.69□□□□□ -1.98
UPF2-201ENST00000356352 DNAH9Q9NYC9 4486 aa2.69□□□□□ -1.98
UPF2-201ENST00000356352 KRTAP10-5P60370 271 aa2.68□□□□□ -1.98
UPF2-201ENST00000356352 KRTAP4-5Q9BYR2 181 aa2.68□□□□□ -1.98
UPF2-201ENST00000356352 VPS13DQ5THJ4 4388 aa2.68□□□□□ -1.98
UPF2-201ENST00000356352 ZANQ9Y493 2812 aa2.66□□□□□ -1.98
UPF2-201ENST00000356352 PKD1P98161 4303 aa2.66□□□□□ -1.98
UPF2-201ENST00000356352 DNAH2Q9P225 4427 aa2.65□□□□□ -1.98
UPF2-201ENST00000356352 DNAH8Q96JB1 4490 aa2.65□□□□□ -1.98
UPF2-201ENST00000356352 FAT2Q9NYQ8 4349 aa2.63□□□□□ -1.99
UPF2-201ENST00000356352 DNAH10Q8IVF4 4471 aa2.62□□□□□ -1.99
UPF2-201ENST00000356352 LORP23490 312 aaPredicted RBP2.62□□□□□ -1.99
UPF2-201ENST00000356352 DNAH11Q96DT5 4516 aa2.61□□□□□ -1.99
UPF2-201ENST00000356352 FAT3Q8TDW7 4589 aa2.58□□□□□ -2
UPF2-201ENST00000356352 KRTAP19-4Q3LI73 84 aa2.58□□□□□ -2
UPF2-201ENST00000356352 STARD9Q9P2P6 4700 aa2.57□□□□□ -2
UPF2-201ENST00000356352 FBN3Q75N90 2809 aa2.57□□□□□ -2
UPF2-201ENST00000356352 DNHD1Q96M86 4753 aa2.56□□□□□ -2
UPF2-201ENST00000356352 MT1HP80294 61 aa2.55□□□□□ -2
UPF2-201ENST00000356352 PLECQ15149 4684 aaKnown RBP2.55□□□□□ -2
UPF2-201ENST00000356352 PKD1L1Q8TDX9 2849 aa2.55□□□□□ -2
UPF2-201ENST00000356352 KRTAP10-7P60409 375 aaPredicted RBP2.55□□□□□ -2
UPF2-201ENST00000356352 KMT2AQ03164 3969 aa2.54□□□□□ -2
UPF2-201ENST00000356352 SPRR2GQ9BYE4 73 aa2.54□□□□□ -2
UPF2-201ENST00000356352 VWFP04275 2813 aa2.54□□□□□ -2
UPF2-201ENST00000356352 COL7A1Q02388 2944 aa2.53□□□□□ -2
UPF2-201ENST00000356352 VPS13BQ7Z7G8 4022 aa2.53□□□□□ -2
UPF2-201ENST00000356352 DNAH5Q8TE73 4624 aa2.52□□□□□ -2.01
UPF2-201ENST00000356352 FBN1P35555 2871 aaKnown RBP2.52□□□□□ -2.01
UPF2-201ENST00000356352 SACSQ9NZJ4 4579 aa2.51□□□□□ -2.01
UPF2-201ENST00000356352 MT2AP02795 61 aa2.51□□□□□ -2.01
UPF2-201ENST00000356352 MEGF8Q7Z7M0 2845 aa2.5□□□□□ -2.01
UPF2-201ENST00000356352 HYDINQ4G0P3 5121 aa2.49□□□□□ -2.01
UPF2-201ENST00000356352 SPRR2FQ96RM1 72 aa2.48□□□□□ -2.01
UPF2-201ENST00000356352 HSPG2P98160 4391 aa2.48□□□□□ -2.01
UPF2-201ENST00000356352 LCE3CQ5T5A8 94 aa2.47□□□□□ -2.01
UPF2-201ENST00000356352 KRTAP4-1Q9BYQ7 146 aa2.47□□□□□ -2.01
UPF2-201ENST00000356352 KRTAP19-5Q3LI72 72 aa2.47□□□□□ -2.01
UPF2-201ENST00000356352 KRTAP17-1Q9BYP8 105 aa2.44□□□□□ -2.02
UPF2-201ENST00000356352 APOBP04114 4563 aaKnown RBP2.44□□□□□ -2.02
UPF2-201ENST00000356352 TNXBP22105 4242 aa2.44□□□□□ -2.02
UPF2-201ENST00000356352 DYNC1H1Q14204 4646 aaKnown RBP2.43□□□□□ -2.02
UPF2-201ENST00000356352 MT1FP04733 61 aa2.43□□□□□ -2.02
UPF2-201ENST00000356352 RYR2Q92736 4967 aa2.42□□□□□ -2.02
UPF2-201ENST00000356352 SPRR2EP22531 72 aa2.36□□□□□ -2.03
UPF2-201ENST00000356352 SPRR2BP35325 72 aa2.36□□□□□ -2.03
UPF2-201ENST00000356352 SPRR2AP35326 72 aa2.36□□□□□ -2.03
UPF2-201ENST00000356352 FAT1Q14517 4588 aa2.35□□□□□ -2.03
UPF2-201ENST00000356352 KRTAP19-8Q3LI54 63 aa2.34□□□□□ -2.03
UPF2-201ENST00000356352 RYR3Q15413 4870 aa2.33□□□□□ -2.04
UPF2-201ENST00000356352 LRP1BQ9NZR2 4599 aa2.33□□□□□ -2.04
UPF2-201ENST00000356352 SRRM2Q9UQ35 2752 aaKnown RBP2.32□□□□□ -2.04
UPF2-201ENST00000356352 KMT2CQ8NEZ4 4911 aaKnown RBP2.32□□□□□ -2.04
UPF2-201ENST00000356352 SPRR2DP22532 72 aa2.31□□□□□ -2.04
UPF2-201ENST00000356352 KRTAP12-4P60329 112 aa2.29□□□□□ -2.04
UPF2-201ENST00000356352 LCE2BO14633 110 aa2.29□□□□□ -2.04
UPF2-201ENST00000356352 HERC1Q15751 4861 aa2.28□□□□□ -2.04
UPF2-201ENST00000356352 LCE3BQ5TA77 95 aa2.28□□□□□ -2.04
UPF2-201ENST00000356352 MT1GP13640 62 aa2.25□□□□□ -2.05
UPF2-201ENST00000356352 MT1XP80297 61 aa2.24□□□□□ -2.05
UPF2-201ENST00000356352 KRTAP19-1Q8IUB9 90 aa2.24□□□□□ -2.05
UPF2-201ENST00000356352 MUC17Q685J3 4493 aa2.23□□□□□ -2.05
UPF2-201ENST00000356352 LRP1Q07954 4544 aaKnown RBP2.23□□□□□ -2.05
UPF2-201ENST00000356352 RYR1P21817 5038 aa2.21□□□□□ -2.06
UPF2-201ENST00000356352 LCE3DQ9BYE3 92 aa2.2□□□□□ -2.06
UPF2-201ENST00000356352 MYCBP2O75592 4640 aa2.19□□□□□ -2.06
UPF2-201ENST00000356352 MT1BP07438 61 aa2.19□□□□□ -2.06
UPF2-201ENST00000356352 LCE3EQ5T5B0 92 aa2.18□□□□□ -2.06
UPF2-201ENST00000356352 BIRC6Q9NR09 4857 aa2.18□□□□□ -2.06
UPF2-201ENST00000356352 SPRR5A0A1B0GTR4 108 aa2.17□□□□□ -2.06
UPF2-201ENST00000356352 EPPK1P58107 5090 aaKnown RBP2.16□□□□□ -2.06
UPF2-201ENST00000356352 FLGP20930 4061 aaPredicted RBP2.15□□□□□ -2.06
UPF2-201ENST00000356352 KRTAP9-8Q9BYQ0 159 aa2.15□□□□□ -2.06
UPF2-201ENST00000356352 HERC2O95714 4834 aa2.15□□□□□ -2.07
UPF2-201ENST00000356352 ABCA13Q86UQ4 5058 aa2.14□□□□□ -2.07
UPF2-201ENST00000356352 LCE2CQ5TA81 110 aa2.13□□□□□ -2.07
UPF2-201ENST00000356352 KRTAP9-3Q9BYQ3 159 aa2.13□□□□□ -2.07
UPF2-201ENST00000356352 KRTAP19-3Q7Z4W3 81 aa2.13□□□□□ -2.07
UPF2-201ENST00000356352 MT1LQ93083 61 aa2.11□□□□□ -2.07
UPF2-201ENST00000356352 KRTAP4-8A0A0G2JLE6 195 aa2.1□□□□□ -2.07
UPF2-201ENST00000356352 LCE2DQ5TA82 110 aaPredicted RBP2.1□□□□□ -2.07
UPF2-201ENST00000356352 KRTAP4-8Q9BYQ9 185 aa2.1□□□□□ -2.07
UPF2-201ENST00000356352 MT3P25713 68 aa2.07□□□□□ -2.08
UPF2-201ENST00000356352 MT1EP04732 61 aa2.05□□□□□ -2.08
UPF2-201ENST00000356352 MT1MQ8N339 61 aa2□□□□□ -2.09
UPF2-201ENST00000356352 LPAP08519 4548 aa2□□□□□ -2.09
UPF2-201ENST00000356352 PCLOQ9Y6V0 5065 aa1.98□□□□□ -2.09
UPF2-201ENST00000356352 KRTAP19-6Q3LI70 58 aa1.98□□□□□ -2.09
UPF2-201ENST00000356352 LRP2P98164 4655 aa1.98□□□□□ -2.09
UPF2-201ENST00000356352 KRTAP19-2Q3LHN2 52 aa1.98□□□□□ -2.09
UPF2-201ENST00000356352 HMCN2Q8NDA2 5059 aa1.98□□□□□ -2.09
UPF2-201ENST00000356352 MT4P47944 62 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms