RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 DCAF8L2P0C7V8 631 aa10.93□□□□□ -0.66
UPF2-201ENST00000356352 PELP1Q8IZL8 1130 aaKnown RBP10.42□□□□□ -0.74
UPF2-201ENST00000356352 SUPT5HO00267 1087 aaKnown RBP10.33□□□□□ -0.76
UPF2-201ENST00000356352 NISCHQ9Y2I1 1504 aa10.18□□□□□ -0.78
UPF2-201ENST00000356352 APLP2Q06481 763 aa10.17□□□□□ -0.78
UPF2-201ENST00000356352 FAM9AQ8IZU1 332 aaPredicted RBP10.17□□□□□ -0.78
UPF2-201ENST00000356352 SHROOM4Q9ULL8 1493 aa10.05□□□□□ -0.8
UPF2-201ENST00000356352 EHMT2Q96KQ7 1210 aa9.99□□□□□ -0.81
UPF2-201ENST00000356352 CCER1Q8TC90 406 aaPredicted RBP9.95□□□□□ -0.82
UPF2-201ENST00000356352 ERICH6Q7L0X2 663 aa9.9□□□□□ -0.82
UPF2-201ENST00000356352 CENPBP07199 599 aaPredicted RBP9.84□□□□□ -0.83
UPF2-201ENST00000356352 ZEB1P37275 1124 aaPredicted RBP9.82□□□□□ -0.84
UPF2-201ENST00000356352 PCGF6Q9BYE7 350 aa9.7□□□□□ -0.86
UPF2-201ENST00000356352 TTBK1Q5TCY1 1321 aaPredicted RBP9.7□□□□□ -0.86
UPF2-201ENST00000356352 NEFLP07196 543 aa9.69□□□□□ -0.86
UPF2-201ENST00000356352 ATP1B4Q9UN42 357 aaPredicted RBP9.67□□□□□ -0.86
UPF2-201ENST00000356352 TRIM41Q8WV44 630 aa9.66□□□□□ -0.86
UPF2-201ENST00000356352 MYT1Q01538 1121 aa9.64□□□□□ -0.87
UPF2-201ENST00000356352 RANGAP1P46060 587 aaPredicted RBP9.62□□□□□ -0.87
UPF2-201ENST00000356352 UBTFP17480 764 aaKnown RBP9.59□□□□□ -0.87
UPF2-201ENST00000356352 DAXXQ9UER7 740 aaPredicted RBP9.49□□□□□ -0.89
UPF2-201ENST00000356352 YTHDC1Q96MU7 727 aaKnown RBP9.43□□□□□ -0.9
UPF2-201ENST00000356352 MYT1LQ9UL68 1186 aa9.41□□□□□ -0.9
UPF2-201ENST00000356352 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.35□□□□□ -0.91
UPF2-201ENST00000356352 HNRNPUL2Q1KMD3 747 aaKnown RBP9.35□□□□□ -0.91
UPF2-201ENST00000356352 TRIM26Q12899 539 aaPredicted RBP9.35□□□□□ -0.91
UPF2-201ENST00000356352 POLR3GLQ9BT43 218 aa9.31□□□□□ -0.92
UPF2-201ENST00000356352 ITGAEP38570 1179 aa9.25□□□□□ -0.93
UPF2-201ENST00000356352 ZNF316A6NFI3 1004 aaPredicted RBP9.24□□□□□ -0.93
UPF2-201ENST00000356352 RTL5Q5HYW3 569 aaPredicted RBP9.21□□□□□ -0.93
UPF2-201ENST00000356352 PPARGC1BQ86YN6 1023 aaKnown RBP9.21□□□□□ -0.93
UPF2-201ENST00000356352 SLC4A1APQ9BWU0 796 aaKnown RBP9.21□□□□□ -0.93
UPF2-201ENST00000356352 CLSPNQ9HAW4 1339 aa9.19□□□□□ -0.94
UPF2-201ENST00000356352 HRCP23327 699 aa9.18□□□□□ -0.94
UPF2-201ENST00000356352 CHIC1Q5VXU3 224 aa9.13□□□□□ -0.95
UPF2-201ENST00000356352 ZBTB47Q9UFB7 747 aaPredicted RBP9.12□□□□□ -0.95
UPF2-201ENST00000356352 CNGB1Q14028 1251 aaPredicted RBP9.1□□□□□ -0.95
UPF2-201ENST00000356352 TRIM52Q96A61 297 aa9.07□□□□□ -0.96
UPF2-201ENST00000356352 FAM50AQ14320 339 aaKnown RBP9.07□□□□□ -0.96
UPF2-201ENST00000356352 DIEXFQ68CQ4 756 aaKnown RBP9.04□□□□□ -0.96
UPF2-201ENST00000356352 NEFMP07197 916 aa9.02□□□□□ -0.97
UPF2-201ENST00000356352 ANP32CO43423 234 aa9.01□□□□□ -0.97
UPF2-201ENST00000356352 LOC105371045A0A1W2PR82 267 aa8.99□□□□□ -0.97
UPF2-201ENST00000356352 CDK11AQ9UQ88 783 aaPredicted RBP8.99□□□□□ -0.97
UPF2-201ENST00000356352 CANXP27824 592 aaKnown RBP8.98□□□□□ -0.97
UPF2-201ENST00000356352 NEUROD1Q13562 356 aa8.96□□□□□ -0.98
UPF2-201ENST00000356352 ZNF326Q5BKZ1 582 aaKnown RBP8.93□□□□□ -0.98
UPF2-201ENST00000356352 SLC24A1O60721 1099 aa8.91□□□□□ -0.98
UPF2-201ENST00000356352 BCANQ96GW7 911 aa8.9□□□□□ -0.98
UPF2-201ENST00000356352 ANP32AP39687 249 aaKnown RBP8.87□□□□□ -0.99
UPF2-201ENST00000356352 FBLN2P98095 1184 aa8.86□□□□□ -0.99
UPF2-201ENST00000356352 ANP32BQ92688 251 aaKnown RBP8.86□□□□□ -0.99
UPF2-201ENST00000356352 ESF1Q9H501 851 aaKnown RBP8.84□□□□□ -0.99
UPF2-201ENST00000356352 PABPN1Q86U42 306 aaKnown RBP eCLIP8.82□□□□□ -1
UPF2-201ENST00000356352 ABCC9O60706 1549 aa8.81□□□□□ -1
UPF2-201ENST00000356352 UPF2Q9HAU5 1272 aaKnown RBP8.8□□□□□ -1
UPF2-201ENST00000356352 GTF3C3Q9Y5Q9 886 aa8.8□□□□□ -1
UPF2-201ENST00000356352 BCL11AQ9H165 835 aa8.78□□□□□ -1
UPF2-201ENST00000356352 HSP90AA1P07900 732 aaKnown RBP8.77□□□□□ -1.01
UPF2-201ENST00000356352 STAG3Q9UJ98 1225 aa8.76□□□□□ -1.01
UPF2-201ENST00000356352 ZNF777Q9ULD5 760 aaPredicted RBP8.75□□□□□ -1.01
UPF2-201ENST00000356352 TONSLQ96HA7 1378 aa8.74□□□□□ -1.01
UPF2-201ENST00000356352 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.73□□□□□ -1.01
UPF2-201ENST00000356352 NPM1P06748 294 aaKnown RBP eCLIP8.73□□□□□ -1.01
UPF2-201ENST00000356352 CSRNP3Q8WYN3 585 aa8.72□□□□□ -1.01
UPF2-201ENST00000356352 NPM2Q86SE8 214 aaKnown RBP8.71□□□□□ -1.02
UPF2-201ENST00000356352 P3H3Q8IVL6 736 aa8.7□□□□□ -1.02
UPF2-201ENST00000356352 GLIPR1L2Q4G1C9 344 aa8.69□□□□□ -1.02
UPF2-201ENST00000356352 CHGAP10645 457 aaKnown RBP8.69□□□□□ -1.02
UPF2-201ENST00000356352 ACIN1Q9UKV3 1341 aaKnown RBP8.68□□□□□ -1.02
UPF2-201ENST00000356352 ARID3CA6NKF2 412 aa8.68□□□□□ -1.02
UPF2-201ENST00000356352 CDK11BP21127 795 aaKnown RBP8.67□□□□□ -1.02
UPF2-201ENST00000356352 WDR43Q15061 677 aaKnown RBP eCLIP8.65□□□□□ -1.02
UPF2-201ENST00000356352 MYH16Q9H6N6 1097 aa8.65□□□□□ -1.03
UPF2-201ENST00000356352 HNRNPUQ00839 825 aaKnown RBP eCLIP8.63□□□□□ -1.03
UPF2-201ENST00000356352 FKBP8Q14318 412 aa8.62□□□□□ -1.03
UPF2-201ENST00000356352 TMC1Q8TDI8 760 aa8.62□□□□□ -1.03
UPF2-201ENST00000356352 EIF5BO60841 1220 aaKnown RBP8.61□□□□□ -1.03
UPF2-201ENST00000356352 CCDC136Q96JN2 1154 aa8.6□□□□□ -1.03
UPF2-201ENST00000356352 TSPY4P0CV99 314 aa8.6□□□□□ -1.03
UPF2-201ENST00000356352 TSPY10P0CW01 314 aa8.6□□□□□ -1.03
UPF2-201ENST00000356352 FAM9BQ8IZU0 186 aa8.6□□□□□ -1.03
UPF2-201ENST00000356352 ANP32EQ9BTT0 268 aa8.58□□□□□ -1.04
UPF2-201ENST00000356352 NCLP19338 710 aaKnown RBP8.57□□□□□ -1.04
UPF2-201ENST00000356352 DDRGK1Q96HY6 314 aa8.56□□□□□ -1.04
UPF2-201ENST00000356352 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.56□□□□□ -1.045e-7■■■□□ 15.9
UPF2-201ENST00000356352 BECN1Q14457 450 aa8.56□□□□□ -1.04
UPF2-201ENST00000356352 PLPPR3Q6T4P5 718 aa8.55□□□□□ -1.04
UPF2-201ENST00000356352 SCRIBQ14160 1630 aa8.54□□□□□ -1.04
UPF2-201ENST00000356352 MTUS2Q5JR59 1369 aa8.54□□□□□ -1.04
UPF2-201ENST00000356352 DDX10Q13206 875 aaKnown RBP8.54□□□□□ -1.04
UPF2-201ENST00000356352 DCAF1Q9Y4B6 1507 aa8.54□□□□□ -1.04
UPF2-201ENST00000356352 SCAF1Q9H7N4 1312 aaKnown RBP8.54□□□□□ -1.04
UPF2-201ENST00000356352 GOLGA6L22H0YM25 854 aa8.54□□□□□ -1.04
UPF2-201ENST00000356352 MRS2Q9HD23 443 aa8.54□□□□□ -1.04
UPF2-201ENST00000356352 CASC1Q6TDU7 716 aa8.52□□□□□ -1.05
UPF2-201ENST00000356352 PPP1R15AO75807 674 aaPredicted RBP8.52□□□□□ -1.05
UPF2-201ENST00000356352 CDCA8Q53HL2 280 aa8.52□□□□□ -1.05
UPF2-201ENST00000356352 RSF1Q96T23 1441 aaPredicted RBP8.51□□□□□ -1.05
UPF2-201ENST00000356352 CFAP53Q96M91 514 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms