RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 KRTAP21-3Q3LHN1 58 aa1.69□□□□□ -2.14
SYNE2-202ENST00000344113 VPS13CQ709C8 3753 aa1.68□□□□□ -2.14
SYNE2-202ENST00000344113 LAMA5O15230 3695 aa1.67□□□□□ -2.14
SYNE2-202ENST00000344113 DNAH11Q96DT5 4516 aa1.67□□□□□ -2.14
SYNE2-202ENST00000344113 BSNQ9UPA5 3926 aa1.67□□□□□ -2.14
SYNE2-202ENST00000344113 DNAH2Q9P225 4427 aa1.66□□□□□ -2.14
SYNE2-202ENST00000344113 HECTD4Q9Y4D8 3996 aa1.65□□□□□ -2.14
SYNE2-202ENST00000344113 DYNC2H1Q8NCM8 4307 aaKnown RBP1.65□□□□□ -2.15
SYNE2-202ENST00000344113 KRTAP10-10P60014 251 aa1.64□□□□□ -2.15
SYNE2-202ENST00000344113 SMG1Q96Q15 3661 aaKnown RBP1.63□□□□□ -2.15
SYNE2-202ENST00000344113 SPENQ96T58 3664 aaKnown RBP1.63□□□□□ -2.15
SYNE2-202ENST00000344113 PRKDCP78527 4128 aaKnown RBP1.63□□□□□ -2.15
SYNE2-202ENST00000344113 KRTAP10-12P60413 245 aa1.62□□□□□ -2.15
SYNE2-202ENST00000344113 KRTAP12-3P60328 96 aa1.62□□□□□ -2.15
SYNE2-202ENST00000344113 DNAH17Q9UFH2 4485 aa1.62□□□□□ -2.15
SYNE2-202ENST00000344113 KRTAP8-1Q8IUC2 63 aa1.61□□□□□ -2.15
SYNE2-202ENST00000344113 ANK3Q12955 4377 aaKnown RBP1.61□□□□□ -2.15
SYNE2-202ENST00000344113 DNAH9Q9NYC9 4486 aa1.59□□□□□ -2.15
SYNE2-202ENST00000344113 DNAH8Q96JB1 4490 aa1.59□□□□□ -2.16
SYNE2-202ENST00000344113 PLECQ15149 4684 aaKnown RBP1.56□□□□□ -2.16
SYNE2-202ENST00000344113 CSMD2Q7Z408 3487 aa1.56□□□□□ -2.16
SYNE2-202ENST00000344113 PKD1P98161 4303 aa1.56□□□□□ -2.16
SYNE2-202ENST00000344113 SACSQ9NZJ4 4579 aa1.55□□□□□ -2.16
SYNE2-202ENST00000344113 APOBP04114 4563 aaKnown RBP1.54□□□□□ -2.16
SYNE2-202ENST00000344113 CSMD3Q7Z407 3707 aa1.53□□□□□ -2.16
SYNE2-202ENST00000344113 PKHD1P08F94 4074 aa1.52□□□□□ -2.17
SYNE2-202ENST00000344113 SVEP1Q4LDE5 3571 aa1.52□□□□□ -2.17
SYNE2-202ENST00000344113 HSPG2P98160 4391 aa1.5□□□□□ -2.17
SYNE2-202ENST00000344113 LCE2DQ5TA82 110 aaPredicted RBP1.5□□□□□ -2.17
SYNE2-202ENST00000344113 LORP23490 312 aaPredicted RBP1.5□□□□□ -2.17
SYNE2-202ENST00000344113 LYSTQ99698 3801 aa1.49□□□□□ -2.17
SYNE2-202ENST00000344113 DNAH5Q8TE73 4624 aa1.49□□□□□ -2.17
SYNE2-202ENST00000344113 LCE3AQ5TA76 89 aa1.48□□□□□ -2.17
SYNE2-202ENST00000344113 MYCBP2O75592 4640 aa1.48□□□□□ -2.17
SYNE2-202ENST00000344113 FAT3Q8TDW7 4589 aa1.48□□□□□ -2.17
SYNE2-202ENST00000344113 DYNC1H1Q14204 4646 aaKnown RBP1.48□□□□□ -2.17
SYNE2-202ENST00000344113 TNXBP22105 4242 aa1.47□□□□□ -2.17
SYNE2-202ENST00000344113 FAT1Q14517 4588 aa1.47□□□□□ -2.17
SYNE2-202ENST00000344113 LCE2CQ5TA81 110 aa1.47□□□□□ -2.17
SYNE2-202ENST00000344113 KRTAP10-5P60370 271 aa1.47□□□□□ -2.17
SYNE2-202ENST00000344113 PKHD1L1Q86WI1 4243 aa1.46□□□□□ -2.17
SYNE2-202ENST00000344113 SPRR2GQ9BYE4 73 aa1.46□□□□□ -2.18
SYNE2-202ENST00000344113 LRP1Q07954 4544 aaKnown RBP1.46□□□□□ -2.18
SYNE2-202ENST00000344113 LCE3CQ5T5A8 94 aa1.45□□□□□ -2.18
SYNE2-202ENST00000344113 RYR1P21817 5038 aa1.45□□□□□ -2.18
SYNE2-202ENST00000344113 FAT2Q9NYQ8 4349 aa1.43□□□□□ -2.18
SYNE2-202ENST00000344113 LCE2BO14633 110 aa1.42□□□□□ -2.18
SYNE2-202ENST00000344113 KRTAP12-4P60329 112 aa1.4□□□□□ -2.19
SYNE2-202ENST00000344113 KRTAP10-4P60372 401 aaPredicted RBP1.39□□□□□ -2.19
SYNE2-202ENST00000344113 KRTAP2-3P0C7H8 128 aa1.39□□□□□ -2.19
SYNE2-202ENST00000344113 KRTAP2-4Q9BYR9 128 aa1.39□□□□□ -2.19
SYNE2-202ENST00000344113 KRTAP2-1Q9BYU5 128 aa1.39□□□□□ -2.19
SYNE2-202ENST00000344113 DSTQ03001 7570 aaKnown RBP1.36□□□□□ -2.19
SYNE2-202ENST00000344113 BIRC6Q9NR09 4857 aa1.36□□□□□ -2.19
SYNE2-202ENST00000344113 LCE2AQ5TA79 106 aaPredicted RBP1.34□□□□□ -2.19
SYNE2-202ENST00000344113 DNHD1Q96M86 4753 aa1.34□□□□□ -2.19
SYNE2-202ENST00000344113 KRTAP19-8Q3LI54 63 aa1.33□□□□□ -2.2
SYNE2-202ENST00000344113 STARD9Q9P2P6 4700 aa1.33□□□□□ -2.2
SYNE2-202ENST00000344113 KRTAP2-2Q9BYT5 123 aa1.32□□□□□ -2.2
SYNE2-202ENST00000344113 LCE3EQ5T5B0 92 aa1.31□□□□□ -2.2
SYNE2-202ENST00000344113 LCE3DQ9BYE3 92 aa1.31□□□□□ -2.2
SYNE2-202ENST00000344113 KRTAP10-7P60409 375 aaPredicted RBP1.3□□□□□ -2.2
SYNE2-202ENST00000344113 MT1AP04731 61 aa1.3□□□□□ -2.2
SYNE2-202ENST00000344113 CRCT1Q9UGL9 99 aa1.29□□□□□ -2.2
SYNE2-202ENST00000344113 LRP1BQ9NZR2 4599 aa1.29□□□□□ -2.2
SYNE2-202ENST00000344113 MACF1Q9UPN3 7388 aaKnown RBP1.29□□□□□ -2.2
SYNE2-202ENST00000344113 RYR3Q15413 4870 aa1.29□□□□□ -2.2
SYNE2-202ENST00000344113 MUC17Q685J3 4493 aa1.28□□□□□ -2.2
SYNE2-202ENST00000344113 KRTAP4-5Q9BYR2 181 aa1.27□□□□□ -2.21
SYNE2-202ENST00000344113 HERC2O95714 4834 aa1.27□□□□□ -2.21
SYNE2-202ENST00000344113 MT1LQ93083 61 aa1.26□□□□□ -2.21
SYNE2-202ENST00000344113 MT1EP04732 61 aa1.26□□□□□ -2.21
SYNE2-202ENST00000344113 MT1HL1P0DM35 61 aa1.26□□□□□ -2.21
SYNE2-202ENST00000344113 SYNE2Q8WXH0 6885 aaKnown RBP1.26□□□□□ -2.21
SYNE2-202ENST00000344113 KRTAP19-5Q3LI72 72 aa1.26□□□□□ -2.21
SYNE2-202ENST00000344113 SPRR2AP35326 72 aa1.25□□□□□ -2.21
SYNE2-202ENST00000344113 NEBP20929 6669 aa1.24□□□□□ -2.21
SYNE2-202ENST00000344113 KRTAP19-1Q8IUB9 90 aa1.23□□□□□ -2.21
SYNE2-202ENST00000344113 HERC1Q15751 4861 aa1.23□□□□□ -2.21
SYNE2-202ENST00000344113 SPRR2BP35325 72 aa1.22□□□□□ -2.21
SYNE2-202ENST00000344113 KMT2DO14686 5537 aa1.22□□□□□ -2.21
SYNE2-202ENST00000344113 FSIP2Q5CZC0 6907 aa1.2□□□□□ -2.22
SYNE2-202ENST00000344113 RYR2Q92736 4967 aa1.2□□□□□ -2.22
SYNE2-202ENST00000344113 LRP2P98164 4655 aa1.2□□□□□ -2.22
SYNE2-202ENST00000344113 KIAA1109Q2LD37 5005 aa1.2□□□□□ -2.22
SYNE2-202ENST00000344113 PRM1P04553 51 aa1.2□□□□□ -2.22
SYNE2-202ENST00000344113 HYDINQ4G0P3 5121 aa1.2□□□□□ -2.22
SYNE2-202ENST00000344113 MT1GP13640 62 aa1.19□□□□□ -2.22
SYNE2-202ENST00000344113 LCE1AQ5T7P2 110 aa1.19□□□□□ -2.22
SYNE2-202ENST00000344113 SPRR2DP22532 72 aa1.19□□□□□ -2.22
SYNE2-202ENST00000344113 KRTAP4-1Q9BYQ7 146 aa1.18□□□□□ -2.22
SYNE2-202ENST00000344113 LPAP08519 4548 aa1.18□□□□□ -2.22
SYNE2-202ENST00000344113 MT1HP80294 61 aa1.18□□□□□ -2.22
SYNE2-202ENST00000344113 KMT2CQ8NEZ4 4911 aaKnown RBP1.18□□□□□ -2.22
SYNE2-202ENST00000344113 LCE1EQ5T753 118 aa1.18□□□□□ -2.22
SYNE2-202ENST00000344113 LCE3BQ5TA77 95 aa1.17□□□□□ -2.22
SYNE2-202ENST00000344113 KRTAP4-7Q9BYR0 210 aa1.17□□□□□ -2.22
SYNE2-202ENST00000344113 SPRR2FQ96RM1 72 aa1.16□□□□□ -2.22
SYNE2-202ENST00000344113 MT1XP80297 61 aa1.15□□□□□ -2.22
SYNE2-202ENST00000344113 PCLOQ9Y6V0 5065 aa1.15□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms