RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 VPS13CQ709C8 3753 aa1.65□□□□□ -2.15
SYNE1-201ENST00000341594 DNAH6Q9C0G6 4158 aa1.65□□□□□ -2.15
SYNE1-201ENST00000341594 PLECQ15149 4684 aaKnown RBP1.65□□□□□ -2.15
SYNE1-201ENST00000341594 ZFHX4Q86UP3 3567 aa1.65□□□□□ -2.15
SYNE1-201ENST00000341594 CSMD1Q96PZ7 3565 aa1.64□□□□□ -2.15
SYNE1-201ENST00000341594 MUC3AQ02505 3323 aa1.63□□□□□ -2.15
SYNE1-201ENST00000341594 ANK3Q12955 4377 aaKnown RBP1.62□□□□□ -2.15
SYNE1-201ENST00000341594 PRKDCP78527 4128 aaKnown RBP1.62□□□□□ -2.15
SYNE1-201ENST00000341594 FRAS1Q86XX4 4008 aa1.62□□□□□ -2.15
SYNE1-201ENST00000341594 ANK2Q01484 3957 aa1.61□□□□□ -2.15
SYNE1-201ENST00000341594 KRTAP17-1Q9BYP8 105 aa1.61□□□□□ -2.15
SYNE1-201ENST00000341594 HECTD4Q9Y4D8 3996 aa1.61□□□□□ -2.15
SYNE1-201ENST00000341594 CUBNO60494 3623 aa1.6□□□□□ -2.15
SYNE1-201ENST00000341594 ZNF469Q96JG9 3925 aaPredicted RBP1.6□□□□□ -2.15
SYNE1-201ENST00000341594 KRTAP10-5P60370 271 aa1.6□□□□□ -2.15
SYNE1-201ENST00000341594 RELNP78509 3460 aa1.59□□□□□ -2.15
SYNE1-201ENST00000341594 RYR1P21817 5038 aa1.59□□□□□ -2.15
SYNE1-201ENST00000341594 DNAH17Q9UFH2 4485 aa1.58□□□□□ -2.16
SYNE1-201ENST00000341594 DYNC1H1Q14204 4646 aaKnown RBP1.57□□□□□ -2.16
SYNE1-201ENST00000341594 VPS13DQ5THJ4 4388 aa1.57□□□□□ -2.16
SYNE1-201ENST00000341594 LCE2CQ5TA81 110 aa1.56□□□□□ -2.16
SYNE1-201ENST00000341594 KMT2AQ03164 3969 aa1.54□□□□□ -2.16
SYNE1-201ENST00000341594 KRTAP4-1Q9BYQ7 146 aa1.53□□□□□ -2.16
SYNE1-201ENST00000341594 DNAH8Q96JB1 4490 aa1.53□□□□□ -2.16
SYNE1-201ENST00000341594 KRTAP4-7Q9BYR0 210 aa1.53□□□□□ -2.16
SYNE1-201ENST00000341594 APOBP04114 4563 aaKnown RBP1.53□□□□□ -2.16
SYNE1-201ENST00000341594 VPS13BQ7Z7G8 4022 aa1.53□□□□□ -2.16
SYNE1-201ENST00000341594 LCE2AQ5TA79 106 aaPredicted RBP1.53□□□□□ -2.17
SYNE1-201ENST00000341594 CSMD2Q7Z408 3487 aa1.52□□□□□ -2.17
SYNE1-201ENST00000341594 SACSQ9NZJ4 4579 aa1.52□□□□□ -2.17
SYNE1-201ENST00000341594 FLGP20930 4061 aaPredicted RBP1.52□□□□□ -2.17
SYNE1-201ENST00000341594 LCE3AQ5TA76 89 aa1.52□□□□□ -2.17
SYNE1-201ENST00000341594 KRTAP8-1Q8IUC2 63 aa1.52□□□□□ -2.17
SYNE1-201ENST00000341594 CSMD3Q7Z407 3707 aa1.52□□□□□ -2.17
SYNE1-201ENST00000341594 DNAH5Q8TE73 4624 aa1.51□□□□□ -2.17
SYNE1-201ENST00000341594 SVEP1Q4LDE5 3571 aa1.5□□□□□ -2.17
SYNE1-201ENST00000341594 LCE2BO14633 110 aa1.5□□□□□ -2.17
SYNE1-201ENST00000341594 DNAH9Q9NYC9 4486 aa1.49□□□□□ -2.17
SYNE1-201ENST00000341594 KRTAP10-4P60372 401 aaPredicted RBP1.48□□□□□ -2.17
SYNE1-201ENST00000341594 SPRR2GQ9BYE4 73 aa1.48□□□□□ -2.17
SYNE1-201ENST00000341594 DYNC2H1Q8NCM8 4307 aaKnown RBP1.48□□□□□ -2.17
SYNE1-201ENST00000341594 KRTAP4-9Q9BYQ8 210 aa1.48□□□□□ -2.17
SYNE1-201ENST00000341594 PKHD1P08F94 4074 aa1.47□□□□□ -2.17
SYNE1-201ENST00000341594 FAT3Q8TDW7 4589 aa1.46□□□□□ -2.18
SYNE1-201ENST00000341594 MYCBP2O75592 4640 aa1.45□□□□□ -2.18
SYNE1-201ENST00000341594 FAT1Q14517 4588 aa1.45□□□□□ -2.18
SYNE1-201ENST00000341594 LOC100996750A0A140TA64 210 aa1.44□□□□□ -2.18
SYNE1-201ENST00000341594 KRTAP4-3Q9BYR4 195 aa1.44□□□□□ -2.18
SYNE1-201ENST00000341594 KRTAP4-8A0A0G2JLE6 195 aa1.43□□□□□ -2.18
SYNE1-201ENST00000341594 KRTAP4-8Q9BYQ9 185 aa1.43□□□□□ -2.18
SYNE1-201ENST00000341594 KRTAP12-3P60328 96 aa1.43□□□□□ -2.18
SYNE1-201ENST00000341594 LRP1Q07954 4544 aaKnown RBP1.43□□□□□ -2.18
SYNE1-201ENST00000341594 PKHD1L1Q86WI1 4243 aa1.41□□□□□ -2.18
SYNE1-201ENST00000341594 FAT2Q9NYQ8 4349 aa1.4□□□□□ -2.18
SYNE1-201ENST00000341594 KRTAP19-5Q3LI72 72 aa1.4□□□□□ -2.19
SYNE1-201ENST00000341594 HYDINQ4G0P3 5121 aa1.4□□□□□ -2.19
SYNE1-201ENST00000341594 LRP1BQ9NZR2 4599 aa1.4□□□□□ -2.19
SYNE1-201ENST00000341594 KRTAP10-12P60413 245 aa1.39□□□□□ -2.19
SYNE1-201ENST00000341594 RYR3Q15413 4870 aa1.39□□□□□ -2.19
SYNE1-201ENST00000341594 PKD1P98161 4303 aa1.39□□□□□ -2.19
SYNE1-201ENST00000341594 DNHD1Q96M86 4753 aa1.39□□□□□ -2.19
SYNE1-201ENST00000341594 KRTAP19-8Q3LI54 63 aa1.38□□□□□ -2.19
SYNE1-201ENST00000341594 KRTAP10-7P60409 375 aaPredicted RBP1.37□□□□□ -2.19
SYNE1-201ENST00000341594 BIRC6Q9NR09 4857 aa1.37□□□□□ -2.19
SYNE1-201ENST00000341594 MT1HL1P0DM35 61 aa1.36□□□□□ -2.19
SYNE1-201ENST00000341594 HSPG2P98160 4391 aa1.36□□□□□ -2.19
SYNE1-201ENST00000341594 TNXBP22105 4242 aa1.36□□□□□ -2.19
SYNE1-201ENST00000341594 MT1GP13640 62 aa1.35□□□□□ -2.19
SYNE1-201ENST00000341594 KRTAP12-4P60329 112 aa1.34□□□□□ -2.2
SYNE1-201ENST00000341594 LCE3CQ5T5A8 94 aa1.33□□□□□ -2.2
SYNE1-201ENST00000341594 RYR2Q92736 4967 aa1.33□□□□□ -2.2
SYNE1-201ENST00000341594 LCE3BQ5TA77 95 aa1.32□□□□□ -2.2
SYNE1-201ENST00000341594 STARD9Q9P2P6 4700 aa1.32□□□□□ -2.2
SYNE1-201ENST00000341594 PCLOQ9Y6V0 5065 aa1.32□□□□□ -2.2
SYNE1-201ENST00000341594 KRTAP2-3P0C7H8 128 aa1.31□□□□□ -2.2
SYNE1-201ENST00000341594 KRTAP2-4Q9BYR9 128 aa1.31□□□□□ -2.2
SYNE1-201ENST00000341594 KRTAP2-1Q9BYU5 128 aa1.31□□□□□ -2.2
SYNE1-201ENST00000341594 KRTAP2-2Q9BYT5 123 aa1.29□□□□□ -2.2
SYNE1-201ENST00000341594 LCE5AQ5TCM9 118 aa1.29□□□□□ -2.2
SYNE1-201ENST00000341594 MT1AP04731 61 aa1.28□□□□□ -2.2
SYNE1-201ENST00000341594 EPPK1P58107 5090 aaKnown RBP1.28□□□□□ -2.2
SYNE1-201ENST00000341594 HERC1Q15751 4861 aa1.28□□□□□ -2.2
SYNE1-201ENST00000341594 MT1LQ93083 61 aa1.28□□□□□ -2.2
SYNE1-201ENST00000341594 LRP2P98164 4655 aa1.28□□□□□ -2.21
SYNE1-201ENST00000341594 HERC2O95714 4834 aa1.27□□□□□ -2.21
SYNE1-201ENST00000341594 HMCN2Q8NDA2 5059 aa1.26□□□□□ -2.21
SYNE1-201ENST00000341594 MT1EP04732 61 aa1.25□□□□□ -2.21
SYNE1-201ENST00000341594 KRTAP19-1Q8IUB9 90 aa1.24□□□□□ -2.21
SYNE1-201ENST00000341594 SYNE2Q8WXH0 6885 aaKnown RBP1.24□□□□□ -2.21
SYNE1-201ENST00000341594 KRTAP9-4Q9BYQ2 154 aa1.23□□□□□ -2.21
SYNE1-201ENST00000341594 KRTAP19-2Q3LHN2 52 aa1.23□□□□□ -2.21
SYNE1-201ENST00000341594 MT1FP04733 61 aa1.23□□□□□ -2.21
SYNE1-201ENST00000341594 KMT2CQ8NEZ4 4911 aaKnown RBP1.23□□□□□ -2.21
SYNE1-201ENST00000341594 ABCA13Q86UQ4 5058 aa1.22□□□□□ -2.21
SYNE1-201ENST00000341594 MUC17Q685J3 4493 aa1.22□□□□□ -2.21
SYNE1-201ENST00000341594 LCE4AQ5TA78 99 aa1.21□□□□□ -2.22
SYNE1-201ENST00000341594 LCE1BQ5T7P3 118 aa1.21□□□□□ -2.22
SYNE1-201ENST00000341594 KIAA1109Q2LD37 5005 aa1.2□□□□□ -2.22
SYNE1-201ENST00000341594 PRM1P04553 51 aa1.2□□□□□ -2.22
SYNE1-201ENST00000341594 KRTAP9-8Q9BYQ0 159 aa1.19□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms