RNA–Protein interactions for RNA: ENST00000338508.8

SHANK2-201, Transcript of SH3 and multiple ankyrin repeat domains 2, humanhuman

TSL 5 BASIC

Gene SHANK2, Length 7,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK2-201ENST00000338508 KRTAP3-2Q9BYR7 98 aa5.03□□□□□ -1.6
SHANK2-201ENST00000338508 ALMS1Q8TCU4 4167 aa4.97□□□□□ -1.61
SHANK2-201ENST00000338508 AKAP9Q99996 3911 aa4.93□□□□□ -1.62
SHANK2-201ENST00000338508 KRTAP10-4P60372 401 aaPredicted RBP4.86□□□□□ -1.63
SHANK2-201ENST00000338508 SPRR2FQ96RM1 72 aa4.75□□□□□ -1.65
SHANK2-201ENST00000338508 DNHD1Q96M86 4753 aa4.73□□□□□ -1.65
SHANK2-201ENST00000338508 KRTAP23-1A1A580 65 aa4.73□□□□□ -1.65
SHANK2-201ENST00000338508 KRTAP10-7P60409 375 aaPredicted RBP4.72□□□□□ -1.65
SHANK2-201ENST00000338508 DNAH9Q9NYC9 4486 aa4.72□□□□□ -1.65
SHANK2-201ENST00000338508 ZNF469Q96JG9 3925 aaPredicted RBP4.68□□□□□ -1.66
SHANK2-201ENST00000338508 DNAH1Q9P2D7 4330 aa4.63□□□□□ -1.67
SHANK2-201ENST00000338508 KRTAP4-1Q9BYQ7 146 aa4.62□□□□□ -1.67
SHANK2-201ENST00000338508 FRAS1Q86XX4 4008 aa4.61□□□□□ -1.67
SHANK2-201ENST00000338508 MT1HP80294 61 aa4.6□□□□□ -1.67
SHANK2-201ENST00000338508 KRTAP19-5Q3LI72 72 aa4.58□□□□□ -1.68
SHANK2-201ENST00000338508 DNAH2Q9P225 4427 aa4.58□□□□□ -1.68
SHANK2-201ENST00000338508 DNAH5Q8TE73 4624 aa4.55□□□□□ -1.68
SHANK2-201ENST00000338508 DNAH10Q8IVF4 4471 aa4.51□□□□□ -1.69
SHANK2-201ENST00000338508 PLECQ15149 4684 aaKnown RBP4.51□□□□□ -1.69
SHANK2-201ENST00000338508 SPRR2EP22531 72 aa4.49□□□□□ -1.69
SHANK2-201ENST00000338508 SPRR2BP35325 72 aa4.49□□□□□ -1.69
SHANK2-201ENST00000338508 SPRR2AP35326 72 aa4.49□□□□□ -1.69
SHANK2-201ENST00000338508 MT2AP02795 61 aa4.48□□□□□ -1.69
SHANK2-201ENST00000338508 DNAH11Q96DT5 4516 aa4.48□□□□□ -1.69
SHANK2-201ENST00000338508 ANK2Q01484 3957 aa4.46□□□□□ -1.69
SHANK2-201ENST00000338508 LCE3BQ5TA77 95 aa4.46□□□□□ -1.69
SHANK2-201ENST00000338508 LCE3CQ5T5A8 94 aa4.46□□□□□ -1.7
SHANK2-201ENST00000338508 DNAH3Q8TD57 4116 aa4.44□□□□□ -1.7
SHANK2-201ENST00000338508 DYNC1H1Q14204 4646 aaKnown RBP4.42□□□□□ -1.7
SHANK2-201ENST00000338508 MT1FP04733 61 aa4.41□□□□□ -1.7
SHANK2-201ENST00000338508 VPS13BQ7Z7G8 4022 aa4.41□□□□□ -1.7
SHANK2-201ENST00000338508 FAT2Q9NYQ8 4349 aa4.41□□□□□ -1.7
SHANK2-201ENST00000338508 RYR1P21817 5038 aa4.4□□□□□ -1.71
SHANK2-201ENST00000338508 KMT2AQ03164 3969 aa4.39□□□□□ -1.71
SHANK2-201ENST00000338508 LYSTQ99698 3801 aa4.38□□□□□ -1.71
SHANK2-201ENST00000338508 KIAA1109Q2LD37 5005 aa4.37□□□□□ -1.71
SHANK2-201ENST00000338508 SPRR2GQ9BYE4 73 aa4.36□□□□□ -1.71
SHANK2-201ENST00000338508 DNAH17Q9UFH2 4485 aa4.36□□□□□ -1.71
SHANK2-201ENST00000338508 VPS13DQ5THJ4 4388 aa4.35□□□□□ -1.71
SHANK2-201ENST00000338508 LRP1BQ9NZR2 4599 aa4.35□□□□□ -1.71
SHANK2-201ENST00000338508 DNAH8Q96JB1 4490 aa4.34□□□□□ -1.71
SHANK2-201ENST00000338508 CMYA5Q8N3K9 4069 aa4.34□□□□□ -1.72
SHANK2-201ENST00000338508 STARD9Q9P2P6 4700 aa4.34□□□□□ -1.72
SHANK2-201ENST00000338508 SPRR2DP22532 72 aa4.33□□□□□ -1.72
SHANK2-201ENST00000338508 RYR2Q92736 4967 aa4.3□□□□□ -1.72
SHANK2-201ENST00000338508 DNAH7Q8WXX0 4024 aa4.3□□□□□ -1.72
SHANK2-201ENST00000338508 MT1GP13640 62 aa4.28□□□□□ -1.72
SHANK2-201ENST00000338508 DYNC2H1Q8NCM8 4307 aaKnown RBP4.28□□□□□ -1.72
SHANK2-201ENST00000338508 BIRC6Q9NR09 4857 aa4.28□□□□□ -1.72
SHANK2-201ENST00000338508 RYR3Q15413 4870 aa4.26□□□□□ -1.73
SHANK2-201ENST00000338508 LCE2BO14633 110 aa4.25□□□□□ -1.73
SHANK2-201ENST00000338508 FAT1Q14517 4588 aa4.25□□□□□ -1.73
SHANK2-201ENST00000338508 SACSQ9NZJ4 4579 aa4.25□□□□□ -1.73
SHANK2-201ENST00000338508 PRKDCP78527 4128 aaKnown RBP4.25□□□□□ -1.73
SHANK2-201ENST00000338508 KRTAP12-4P60329 112 aa4.2□□□□□ -1.74
SHANK2-201ENST00000338508 DNAH6Q9C0G6 4158 aa4.18□□□□□ -1.74
SHANK2-201ENST00000338508 KRTAP17-1Q9BYP8 105 aa4.15□□□□□ -1.75
SHANK2-201ENST00000338508 HECTD4Q9Y4D8 3996 aa4.11□□□□□ -1.75
SHANK2-201ENST00000338508 HERC2O95714 4834 aa4.11□□□□□ -1.75
SHANK2-201ENST00000338508 APOBP04114 4563 aaKnown RBP4.1□□□□□ -1.75
SHANK2-201ENST00000338508 HYDINQ4G0P3 5121 aa4.09□□□□□ -1.75
SHANK2-201ENST00000338508 KRTAP4-8A0A0G2JLE6 195 aa4.08□□□□□ -1.76
SHANK2-201ENST00000338508 KRTAP4-8Q9BYQ9 185 aa4.08□□□□□ -1.76
SHANK2-201ENST00000338508 LCE3DQ9BYE3 92 aa4.04□□□□□ -1.76
SHANK2-201ENST00000338508 LCE2CQ5TA81 110 aa4.04□□□□□ -1.76
SHANK2-201ENST00000338508 FAT3Q8TDW7 4589 aa4.02□□□□□ -1.77
SHANK2-201ENST00000338508 HERC1Q15751 4861 aa4□□□□□ -1.77
SHANK2-201ENST00000338508 PCLOQ9Y6V0 5065 aa4□□□□□ -1.77
SHANK2-201ENST00000338508 LCE2DQ5TA82 110 aaPredicted RBP4□□□□□ -1.77
SHANK2-201ENST00000338508 MT1XP80297 61 aa3.99□□□□□ -1.77
SHANK2-201ENST00000338508 MT4P47944 62 aa3.98□□□□□ -1.77
SHANK2-201ENST00000338508 KRTAP19-1Q8IUB9 90 aa3.97□□□□□ -1.77
SHANK2-201ENST00000338508 ABCA13Q86UQ4 5058 aa3.95□□□□□ -1.78
SHANK2-201ENST00000338508 SPRR5A0A1B0GTR4 108 aa3.93□□□□□ -1.78
SHANK2-201ENST00000338508 LCE3EQ5T5B0 92 aa3.92□□□□□ -1.78
SHANK2-201ENST00000338508 KRTAP19-4Q3LI73 84 aa3.92□□□□□ -1.78
SHANK2-201ENST00000338508 LPAP08519 4548 aa3.92□□□□□ -1.78
SHANK2-201ENST00000338508 KRTAP19-8Q3LI54 63 aa3.91□□□□□ -1.78
SHANK2-201ENST00000338508 HSPG2P98160 4391 aa3.89□□□□□ -1.79
SHANK2-201ENST00000338508 EPPK1P58107 5090 aaKnown RBP3.89□□□□□ -1.79
SHANK2-201ENST00000338508 LRP1Q07954 4544 aaKnown RBP3.88□□□□□ -1.79
SHANK2-201ENST00000338508 MT1BP07438 61 aa3.88□□□□□ -1.79
SHANK2-201ENST00000338508 MYCBP2O75592 4640 aa3.88□□□□□ -1.79
SHANK2-201ENST00000338508 KRTAP4-7Q9BYR0 210 aa3.88□□□□□ -1.79
SHANK2-201ENST00000338508 LCE1BQ5T7P3 118 aa3.87□□□□□ -1.79
SHANK2-201ENST00000338508 KRTAP9-8Q9BYQ0 159 aa3.87□□□□□ -1.79
SHANK2-201ENST00000338508 KMT2CQ8NEZ4 4911 aaKnown RBP3.85□□□□□ -1.79
SHANK2-201ENST00000338508 FLGP20930 4061 aaPredicted RBP3.83□□□□□ -1.8
SHANK2-201ENST00000338508 PKD1P98161 4303 aa3.82□□□□□ -1.8
SHANK2-201ENST00000338508 PKHD1L1Q86WI1 4243 aa3.82□□□□□ -1.8
SHANK2-201ENST00000338508 LCE1DQ5T752 114 aa3.81□□□□□ -1.8
SHANK2-201ENST00000338508 KRTAP9-3Q9BYQ3 159 aa3.79□□□□□ -1.8
SHANK2-201ENST00000338508 PRM1P04553 51 aa3.76□□□□□ -1.81
SHANK2-201ENST00000338508 KRTAP19-3Q7Z4W3 81 aa3.76□□□□□ -1.81
SHANK2-201ENST00000338508 PKHD1P08F94 4074 aa3.76□□□□□ -1.81
SHANK2-201ENST00000338508 LOC100996750A0A140TA64 210 aa3.73□□□□□ -1.81
SHANK2-201ENST00000338508 RNF213Q63HN8 5207 aa3.72□□□□□ -1.81
SHANK2-201ENST00000338508 LRP2P98164 4655 aa3.68□□□□□ -1.82
SHANK2-201ENST00000338508 TNXBP22105 4242 aa3.66□□□□□ -1.82
SHANK2-201ENST00000338508 MT1LQ93083 61 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms