RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 RELNP78509 3460 aa2.73□□□□□ -1.97
CSMD1-201ENST00000335551 KRTAP3-2Q9BYR7 98 aa2.73□□□□□ -1.97
CSMD1-201ENST00000335551 DNAH10Q8IVF4 4471 aa2.72□□□□□ -1.97
CSMD1-201ENST00000335551 CRCT1Q9UGL9 99 aa2.7□□□□□ -1.98
CSMD1-201ENST00000335551 PRKDCP78527 4128 aaKnown RBP2.68□□□□□ -1.98
CSMD1-201ENST00000335551 DNAH11Q96DT5 4516 aa2.68□□□□□ -1.98
CSMD1-201ENST00000335551 KRTAP3-3Q9BYR6 98 aa2.67□□□□□ -1.98
CSMD1-201ENST00000335551 VPS13DQ5THJ4 4388 aa2.67□□□□□ -1.98
CSMD1-201ENST00000335551 MUC3AQ02505 3323 aa2.66□□□□□ -1.98
CSMD1-201ENST00000335551 CSMD1Q96PZ7 3565 aa2.66□□□□□ -1.98
CSMD1-201ENST00000335551 KRTAP10-5P60370 271 aa2.64□□□□□ -1.99
CSMD1-201ENST00000335551 VPS13BQ7Z7G8 4022 aa2.64□□□□□ -1.99
CSMD1-201ENST00000335551 CSMD3Q7Z407 3707 aa2.63□□□□□ -1.99
CSMD1-201ENST00000335551 LCE3AQ5TA76 89 aa2.63□□□□□ -1.99
CSMD1-201ENST00000335551 KRTAP10-7P60409 375 aaPredicted RBP2.62□□□□□ -1.99
CSMD1-201ENST00000335551 KMT2AQ03164 3969 aa2.62□□□□□ -1.99
CSMD1-201ENST00000335551 DNAH9Q9NYC9 4486 aa2.61□□□□□ -1.99
CSMD1-201ENST00000335551 KRTAP8-1Q8IUC2 63 aa2.6□□□□□ -1.99
CSMD1-201ENST00000335551 LORP23490 312 aaPredicted RBP2.59□□□□□ -2
CSMD1-201ENST00000335551 MT1HL1P0DM35 61 aa2.58□□□□□ -2
CSMD1-201ENST00000335551 SVEP1Q4LDE5 3571 aa2.56□□□□□ -2
CSMD1-201ENST00000335551 DYNC2H1Q8NCM8 4307 aaKnown RBP2.55□□□□□ -2
CSMD1-201ENST00000335551 DNAH17Q9UFH2 4485 aa2.55□□□□□ -2
CSMD1-201ENST00000335551 CUBNO60494 3623 aa2.55□□□□□ -2
CSMD1-201ENST00000335551 PKHD1L1Q86WI1 4243 aa2.54□□□□□ -2
CSMD1-201ENST00000335551 PLECQ15149 4684 aaKnown RBP2.54□□□□□ -2
CSMD1-201ENST00000335551 FAT2Q9NYQ8 4349 aa2.54□□□□□ -2
CSMD1-201ENST00000335551 DYNC1H1Q14204 4646 aaKnown RBP2.53□□□□□ -2
CSMD1-201ENST00000335551 FLGP20930 4061 aaPredicted RBP2.53□□□□□ -2
CSMD1-201ENST00000335551 CSMD2Q7Z408 3487 aa2.5□□□□□ -2.01
CSMD1-201ENST00000335551 DNAH8Q96JB1 4490 aa2.49□□□□□ -2.01
CSMD1-201ENST00000335551 KRTAP10-4P60372 401 aaPredicted RBP2.47□□□□□ -2.01
CSMD1-201ENST00000335551 PKHD1P08F94 4074 aa2.47□□□□□ -2.01
CSMD1-201ENST00000335551 DNHD1Q96M86 4753 aa2.46□□□□□ -2.02
CSMD1-201ENST00000335551 KRTAP19-4Q3LI73 84 aa2.45□□□□□ -2.02
CSMD1-201ENST00000335551 DNAH5Q8TE73 4624 aa2.45□□□□□ -2.02
CSMD1-201ENST00000335551 KRTAP4-5Q9BYR2 181 aa2.42□□□□□ -2.02
CSMD1-201ENST00000335551 LRP1Q07954 4544 aaKnown RBP2.41□□□□□ -2.02
CSMD1-201ENST00000335551 SACSQ9NZJ4 4579 aa2.41□□□□□ -2.02
CSMD1-201ENST00000335551 LCE3CQ5T5A8 94 aa2.4□□□□□ -2.03
CSMD1-201ENST00000335551 SPRR2FQ96RM1 72 aa2.38□□□□□ -2.03
CSMD1-201ENST00000335551 APOBP04114 4563 aaKnown RBP2.36□□□□□ -2.03
CSMD1-201ENST00000335551 PKD1P98161 4303 aa2.35□□□□□ -2.03
CSMD1-201ENST00000335551 STARD9Q9P2P6 4700 aa2.34□□□□□ -2.03
CSMD1-201ENST00000335551 KRTAP12-4P60329 112 aa2.34□□□□□ -2.04
CSMD1-201ENST00000335551 LRP1BQ9NZR2 4599 aa2.33□□□□□ -2.04
CSMD1-201ENST00000335551 SPRR2EP22531 72 aa2.33□□□□□ -2.04
CSMD1-201ENST00000335551 SPRR2BP35325 72 aa2.33□□□□□ -2.04
CSMD1-201ENST00000335551 SPRR2AP35326 72 aa2.33□□□□□ -2.04
CSMD1-201ENST00000335551 KRTAP19-5Q3LI72 72 aa2.33□□□□□ -2.04
CSMD1-201ENST00000335551 SPRR2GQ9BYE4 73 aa2.33□□□□□ -2.04
CSMD1-201ENST00000335551 FAT1Q14517 4588 aa2.29□□□□□ -2.04
CSMD1-201ENST00000335551 SPRR2DP22532 72 aa2.29□□□□□ -2.04
CSMD1-201ENST00000335551 FAT3Q8TDW7 4589 aa2.29□□□□□ -2.04
CSMD1-201ENST00000335551 RYR1P21817 5038 aa2.28□□□□□ -2.04
CSMD1-201ENST00000335551 MT1HP80294 61 aa2.27□□□□□ -2.05
CSMD1-201ENST00000335551 TNXBP22105 4242 aa2.27□□□□□ -2.05
CSMD1-201ENST00000335551 LCE2BO14633 110 aa2.25□□□□□ -2.05
CSMD1-201ENST00000335551 RYR3Q15413 4870 aa2.24□□□□□ -2.05
CSMD1-201ENST00000335551 BIRC6Q9NR09 4857 aa2.24□□□□□ -2.05
CSMD1-201ENST00000335551 MYCBP2O75592 4640 aa2.24□□□□□ -2.05
CSMD1-201ENST00000335551 SPRR5A0A1B0GTR4 108 aa2.24□□□□□ -2.05
CSMD1-201ENST00000335551 MT2AP02795 61 aa2.23□□□□□ -2.05
CSMD1-201ENST00000335551 HSPG2P98160 4391 aa2.22□□□□□ -2.05
CSMD1-201ENST00000335551 LCE3BQ5TA77 95 aa2.22□□□□□ -2.05
CSMD1-201ENST00000335551 KRTAP4-1Q9BYQ7 146 aa2.19□□□□□ -2.06
CSMD1-201ENST00000335551 LCE2CQ5TA81 110 aa2.19□□□□□ -2.06
CSMD1-201ENST00000335551 MT3P25713 68 aa2.19□□□□□ -2.06
CSMD1-201ENST00000335551 MT1FP04733 61 aa2.17□□□□□ -2.06
CSMD1-201ENST00000335551 LCE3DQ9BYE3 92 aa2.14□□□□□ -2.07
CSMD1-201ENST00000335551 LCE2DQ5TA82 110 aaPredicted RBP2.13□□□□□ -2.07
CSMD1-201ENST00000335551 PCLOQ9Y6V0 5065 aa2.13□□□□□ -2.07
CSMD1-201ENST00000335551 LCE3EQ5T5B0 92 aa2.13□□□□□ -2.07
CSMD1-201ENST00000335551 RYR2Q92736 4967 aa2.12□□□□□ -2.07
CSMD1-201ENST00000335551 HERC2O95714 4834 aa2.11□□□□□ -2.07
CSMD1-201ENST00000335551 KRTAP19-8Q3LI54 63 aa2.1□□□□□ -2.07
CSMD1-201ENST00000335551 MT1GP13640 62 aa2.08□□□□□ -2.08
CSMD1-201ENST00000335551 KMT2CQ8NEZ4 4911 aaKnown RBP2.08□□□□□ -2.08
CSMD1-201ENST00000335551 MT1XP80297 61 aa2.06□□□□□ -2.08
CSMD1-201ENST00000335551 KRTAP17-1Q9BYP8 105 aa2.06□□□□□ -2.08
CSMD1-201ENST00000335551 KRTAP19-1Q8IUB9 90 aa2.01□□□□□ -2.09
CSMD1-201ENST00000335551 KRTAP20-1Q3LI63 56 aa2□□□□□ -2.09
CSMD1-201ENST00000335551 PRM1P04553 51 aa1.99□□□□□ -2.09
CSMD1-201ENST00000335551 HYDINQ4G0P3 5121 aa1.99□□□□□ -2.09
CSMD1-201ENST00000335551 EPPK1P58107 5090 aaKnown RBP1.98□□□□□ -2.09
CSMD1-201ENST00000335551 MT1LQ93083 61 aa1.97□□□□□ -2.09
CSMD1-201ENST00000335551 HERC1Q15751 4861 aa1.96□□□□□ -2.09
CSMD1-201ENST00000335551 MUC17Q685J3 4493 aa1.96□□□□□ -2.1
CSMD1-201ENST00000335551 KRTAP9-6A0A140TA67 174 aa1.96□□□□□ -2.1
CSMD1-201ENST00000335551 LRP2P98164 4655 aa1.95□□□□□ -2.1
CSMD1-201ENST00000335551 KRTAP9-8Q9BYQ0 159 aa1.94□□□□□ -2.1
CSMD1-201ENST00000335551 MT1BP07438 61 aa1.94□□□□□ -2.1
CSMD1-201ENST00000335551 MT4P47944 62 aa1.93□□□□□ -2.1
CSMD1-201ENST00000335551 KIAA1109Q2LD37 5005 aa1.93□□□□□ -2.1
CSMD1-201ENST00000335551 KRTAP19-3Q7Z4W3 81 aa1.93□□□□□ -2.1
CSMD1-201ENST00000335551 KRTAP9-3Q9BYQ3 159 aa1.92□□□□□ -2.1
CSMD1-201ENST00000335551 KRTAP9-2Q9BYQ4 174 aa1.91□□□□□ -2.1
CSMD1-201ENST00000335551 HMCN2Q8NDA2 5059 aa1.9□□□□□ -2.11
CSMD1-201ENST00000335551 LCE1BQ5T7P3 118 aa1.88□□□□□ -2.11
CSMD1-201ENST00000335551 MT1EP04732 61 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms