RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 PELP1Q8IZL8 1130 aaKnown RBP10.35□□□□□ -0.75
CSMD1-201ENST00000335551 MYT1Q01538 1121 aa10.07□□□□□ -0.8
CSMD1-201ENST00000335551 CCER1Q8TC90 406 aaPredicted RBP9.8□□□□□ -0.84
CSMD1-201ENST00000335551 ERICH6Q7L0X2 663 aa9.78□□□□□ -0.84
CSMD1-201ENST00000335551 DCAF8L2P0C7V8 631 aa9.74□□□□□ -0.85
CSMD1-201ENST00000335551 CENPBP07199 599 aaPredicted RBP9.65□□□□□ -0.86
CSMD1-201ENST00000335551 YTHDC1Q96MU7 727 aaKnown RBP9.52□□□□□ -0.89
CSMD1-201ENST00000335551 TTBK1Q5TCY1 1321 aaPredicted RBP9.46□□□□□ -0.9
CSMD1-201ENST00000335551 ZEB1P37275 1124 aaPredicted RBP9.45□□□□□ -0.9
CSMD1-201ENST00000335551 NEFLP07196 543 aa9.43□□□□□ -0.9
CSMD1-201ENST00000335551 APLP2Q06481 763 aa9.43□□□□□ -0.9
CSMD1-201ENST00000335551 SUPT5HO00267 1087 aaKnown RBP9.43□□□□□ -0.9
CSMD1-201ENST00000335551 NISCHQ9Y2I1 1504 aa9.32□□□□□ -0.92
CSMD1-201ENST00000335551 FAM9AQ8IZU1 332 aaPredicted RBP9.31□□□□□ -0.92
CSMD1-201ENST00000335551 DAXXQ9UER7 740 aaPredicted RBP9.29□□□□□ -0.92
CSMD1-201ENST00000335551 PCGF6Q9BYE7 350 aa9.27□□□□□ -0.93
CSMD1-201ENST00000335551 EHMT2Q96KQ7 1210 aa9.18□□□□□ -0.94
CSMD1-201ENST00000335551 RTL5Q5HYW3 569 aaPredicted RBP9.16□□□□□ -0.94
CSMD1-201ENST00000335551 SHROOM4Q9ULL8 1493 aa9.1□□□□□ -0.95
CSMD1-201ENST00000335551 ZNF316A6NFI3 1004 aaPredicted RBP9.05□□□□□ -0.96
CSMD1-201ENST00000335551 GLIPR1L2Q4G1C9 344 aa8.92□□□□□ -0.98
CSMD1-201ENST00000335551 HRCP23327 699 aa8.86□□□□□ -0.99
CSMD1-201ENST00000335551 TRIM26Q12899 539 aaPredicted RBP8.84□□□□□ -0.99
CSMD1-201ENST00000335551 CLSPNQ9HAW4 1339 aa8.83□□□□□ -1
CSMD1-201ENST00000335551 TRIM41Q8WV44 630 aa8.8□□□□□ -1
CSMD1-201ENST00000335551 UBTFP17480 764 aaKnown RBP8.77□□□□□ -1
CSMD1-201ENST00000335551 MYT1LQ9UL68 1186 aa8.77□□□□□ -1.01
CSMD1-201ENST00000335551 ATP1B4Q9UN42 357 aaPredicted RBP8.76□□□□□ -1.01
CSMD1-201ENST00000335551 RANGAP1P46060 587 aaPredicted RBP8.75□□□□□ -1.01
CSMD1-201ENST00000335551 CDK11AQ9UQ88 783 aaPredicted RBP8.73□□□□□ -1.01
CSMD1-201ENST00000335551 EIF5BO60841 1220 aaKnown RBP8.72□□□□□ -1.01
CSMD1-201ENST00000335551 ANP32BQ92688 251 aaKnown RBP8.71□□□□□ -1.01
CSMD1-201ENST00000335551 DIEXFQ68CQ4 756 aaKnown RBP8.7□□□□□ -1.02
CSMD1-201ENST00000335551 ANP32AP39687 249 aaKnown RBP8.69□□□□□ -1.02
CSMD1-201ENST00000335551 POLR3GLQ9BT43 218 aa8.67□□□□□ -1.02
CSMD1-201ENST00000335551 ZBTB47Q9UFB7 747 aaPredicted RBP8.64□□□□□ -1.03
CSMD1-201ENST00000335551 GTF3C3Q9Y5Q9 886 aa8.64□□□□□ -1.03
CSMD1-201ENST00000335551 BCANQ96GW7 911 aa8.57□□□□□ -1.04
CSMD1-201ENST00000335551 TNNT2P45379 298 aaPredicted RBP8.54□□□□□ -1.04
CSMD1-201ENST00000335551 ANP32CO43423 234 aa8.53□□□□□ -1.04
CSMD1-201ENST00000335551 PPARGC1BQ86YN6 1023 aaKnown RBP8.53□□□□□ -1.04
CSMD1-201ENST00000335551 CANXP27824 592 aaKnown RBP8.52□□□□□ -1.04
CSMD1-201ENST00000335551 SLC4A1APQ9BWU0 796 aaKnown RBP8.52□□□□□ -1.05
CSMD1-201ENST00000335551 HSP90AA1P07900 732 aaKnown RBP8.5□□□□□ -1.05
CSMD1-201ENST00000335551 ITGAEP38570 1179 aa8.5□□□□□ -1.05
CSMD1-201ENST00000335551 ACIN1Q9UKV3 1341 aaKnown RBP8.5□□□□□ -1.05
CSMD1-201ENST00000335551 CNGB1Q14028 1251 aaPredicted RBP8.49□□□□□ -1.05
CSMD1-201ENST00000335551 UPF2Q9HAU5 1272 aaKnown RBP8.48□□□□□ -1.05
CSMD1-201ENST00000335551 HNRNPUL2Q1KMD3 747 aaKnown RBP8.47□□□□□ -1.05
CSMD1-201ENST00000335551 NEFMP07197 916 aa8.44□□□□□ -1.06
CSMD1-201ENST00000335551 NPM2Q86SE8 214 aaKnown RBP8.44□□□□□ -1.06
CSMD1-201ENST00000335551 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.43□□□□□ -1.06
CSMD1-201ENST00000335551 TRIM44Q96DX7 344 aaPredicted RBP8.4□□□□□ -1.06
CSMD1-201ENST00000335551 ANP32EQ9BTT0 268 aa8.4□□□□□ -1.06
CSMD1-201ENST00000335551 CDK11BP21127 795 aaKnown RBP8.4□□□□□ -1.07
CSMD1-201ENST00000335551 NBR1Q14596 966 aa8.38□□□□□ -1.07
CSMD1-201ENST00000335551 NCLP19338 710 aaKnown RBP8.35□□□□□ -1.07
CSMD1-201ENST00000335551 ERICH6BQ5W0A0 696 aa8.33□□□□□ -1.08
CSMD1-201ENST00000335551 DDRGK1Q96HY6 314 aa8.31□□□□□ -1.08
CSMD1-201ENST00000335551 BCL11AQ9H165 835 aa8.3□□□□□ -1.08
CSMD1-201ENST00000335551 BECN1Q14457 450 aa8.29□□□□□ -1.08
CSMD1-201ENST00000335551 NEUROD1Q13562 356 aa8.29□□□□□ -1.08
CSMD1-201ENST00000335551 FAM50AQ14320 339 aaKnown RBP8.29□□□□□ -1.08
CSMD1-201ENST00000335551 FKBP8Q14318 412 aa8.29□□□□□ -1.08
CSMD1-201ENST00000335551 CHIC1Q5VXU3 224 aa8.28□□□□□ -1.08
CSMD1-201ENST00000335551 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.28□□□□□ -1.08
CSMD1-201ENST00000335551 GOLGA6L22H0YM25 854 aa8.28□□□□□ -1.08
CSMD1-201ENST00000335551 ARXQ96QS3 562 aa8.28□□□□□ -1.08
CSMD1-201ENST00000335551 TRIM52Q96A61 297 aa8.28□□□□□ -1.08
CSMD1-201ENST00000335551 LOC105371045A0A1W2PR82 267 aa8.27□□□□□ -1.09
CSMD1-201ENST00000335551 CCDC136Q96JN2 1154 aa8.26□□□□□ -1.09
CSMD1-201ENST00000335551 SLC24A1O60721 1099 aa8.25□□□□□ -1.09
CSMD1-201ENST00000335551 NAP1L5Q96NT1 182 aaPredicted RBP8.25□□□□□ -1.09
CSMD1-201ENST00000335551 ZNF326Q5BKZ1 582 aaKnown RBP8.25□□□□□ -1.09
CSMD1-201ENST00000335551 PTMAP06454 111 aaKnown RBP8.23□□□□□ -1.09
CSMD1-201ENST00000335551 DNTTIP2Q5QJE6 756 aaKnown RBP8.21□□□□□ -1.1
CSMD1-201ENST00000335551 CHAF1AQ13111 956 aaPredicted RBP8.2□□□□□ -1.1
CSMD1-201ENST00000335551 MYH16Q9H6N6 1097 aa8.19□□□□□ -1.1
CSMD1-201ENST00000335551 GOLGA6L6A8MZA4 724 aa8.19□□□□□ -1.1
CSMD1-201ENST00000335551 HNRNPUQ00839 825 aaKnown RBP eCLIP8.18□□□□□ -1.1
CSMD1-201ENST00000335551 ZRSR1Q15695 479 aaKnown RBP8.18□□□□□ -1.1
CSMD1-201ENST00000335551 PPM1GO15355 546 aaPredicted RBP8.18□□□□□ -1.1
CSMD1-201ENST00000335551 NRDCO43847 1150 aa8.16□□□□□ -1.1
CSMD1-201ENST00000335551 SCAF1Q9H7N4 1312 aaKnown RBP8.14□□□□□ -1.11
CSMD1-201ENST00000335551 TONSLQ96HA7 1378 aa8.14□□□□□ -1.11
CSMD1-201ENST00000335551 DCAF1Q9Y4B6 1507 aa8.13□□□□□ -1.11
CSMD1-201ENST00000335551 CCDC180Q9P1Z9 1646 aa8.12□□□□□ -1.11
CSMD1-201ENST00000335551 L1TD1Q5T7N2 865 aaKnown RBP8.12□□□□□ -1.11
CSMD1-201ENST00000335551 CASC1Q6TDU7 716 aa8.1□□□□□ -1.11
CSMD1-201ENST00000335551 NOP58Q9Y2X3 529 aaKnown RBP8.09□□□□□ -1.11
CSMD1-201ENST00000335551 MSNP26038 577 aaKnown RBP8.09□□□□□ -1.11
CSMD1-201ENST00000335551 RTN4Q9NQC3 1192 aaKnown RBP8.08□□□□□ -1.12
CSMD1-201ENST00000335551 FAM9BQ8IZU0 186 aa8.08□□□□□ -1.12
CSMD1-201ENST00000335551 TNNT3P45378 269 aaPredicted RBP8.07□□□□□ -1.12
CSMD1-201ENST00000335551 TMC1Q8TDI8 760 aa8.06□□□□□ -1.12
CSMD1-201ENST00000335551 WDR43Q15061 677 aaKnown RBP eCLIP8.06□□□□□ -1.12
CSMD1-201ENST00000335551 ABCC9O60706 1549 aa8.06□□□□□ -1.12
CSMD1-201ENST00000335551 AMER1Q5JTC6 1135 aaPredicted RBP8.04□□□□□ -1.12
CSMD1-201ENST00000335551 MRS2Q9HD23 443 aa8.03□□□□□ -1.12
CSMD1-201ENST00000335551 CALRP27797 417 aaKnown RBP8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms