RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 HUWE1Q7Z6Z7 4374 aaKnown RBP3.33□□□□□ -1.88
SF3B1-201ENST00000335508 DNAH10Q8IVF4 4471 aa3.33□□□□□ -1.88
SF3B1-201ENST00000335508 VPS13CQ709C8 3753 aa3.32□□□□□ -1.88
SF3B1-201ENST00000335508 FAT1Q14517 4588 aa3.3□□□□□ -1.88
SF3B1-201ENST00000335508 RYR2Q92736 4967 aa3.29□□□□□ -1.88
SF3B1-201ENST00000335508 DNAH9Q9NYC9 4486 aa3.27□□□□□ -1.89
SF3B1-201ENST00000335508 KRTAP10-6P60371 365 aaPredicted RBP3.25□□□□□ -1.89
SF3B1-201ENST00000335508 EPPK1P58107 5090 aaKnown RBP3.24□□□□□ -1.89
SF3B1-201ENST00000335508 ALMS1Q8TCU4 4167 aa3.24□□□□□ -1.89
SF3B1-201ENST00000335508 SACSQ9NZJ4 4579 aa3.22□□□□□ -1.89
SF3B1-201ENST00000335508 UBR4Q5T4S7 5183 aa3.21□□□□□ -1.9
SF3B1-201ENST00000335508 ABCA13Q86UQ4 5058 aa3.2□□□□□ -1.9
SF3B1-201ENST00000335508 LRP1BQ9NZR2 4599 aa3.19□□□□□ -1.9
SF3B1-201ENST00000335508 DNAH3Q8TD57 4116 aa3.18□□□□□ -1.9
SF3B1-201ENST00000335508 KRTAP3-3Q9BYR6 98 aa3.18□□□□□ -1.9
SF3B1-201ENST00000335508 KRTAP15-1Q3LI76 137 aa3.18□□□□□ -1.9
SF3B1-201ENST00000335508 KRTAP12-1P59990 96 aa3.18□□□□□ -1.9
SF3B1-201ENST00000335508 VPS13DQ5THJ4 4388 aa3.17□□□□□ -1.9
SF3B1-201ENST00000335508 PRKDCP78527 4128 aaKnown RBP3.17□□□□□ -1.9
SF3B1-201ENST00000335508 KRTAP3-2Q9BYR7 98 aa3.17□□□□□ -1.9
SF3B1-201ENST00000335508 DNAH1Q9P2D7 4330 aa3.15□□□□□ -1.91
SF3B1-201ENST00000335508 MYCBP2O75592 4640 aa3.15□□□□□ -1.91
SF3B1-201ENST00000335508 KRTAP13-4Q3LI77 160 aa3.14□□□□□ -1.91
SF3B1-201ENST00000335508 KMT2CQ8NEZ4 4911 aaKnown RBP3.14□□□□□ -1.91
SF3B1-201ENST00000335508 STARD9Q9P2P6 4700 aa3.13□□□□□ -1.91
SF3B1-201ENST00000335508 SYNE1Q8NF91 8797 aaKnown RBP3.13□□□□□ -1.91
SF3B1-201ENST00000335508 DNAH8Q96JB1 4490 aa3.13□□□□□ -1.91
SF3B1-201ENST00000335508 DYNC2H1Q8NCM8 4307 aaKnown RBP3.13□□□□□ -1.91
SF3B1-201ENST00000335508 APOBP04114 4563 aaKnown RBP3.12□□□□□ -1.91
SF3B1-201ENST00000335508 DNAH17Q9UFH2 4485 aa3.12□□□□□ -1.91
SF3B1-201ENST00000335508 CMYA5Q8N3K9 4069 aa3.12□□□□□ -1.91
SF3B1-201ENST00000335508 HERC1Q15751 4861 aa3.1□□□□□ -1.91
SF3B1-201ENST00000335508 DNAH6Q9C0G6 4158 aa3.1□□□□□ -1.91
SF3B1-201ENST00000335508 KRTAP12-2P59991 146 aa3.09□□□□□ -1.91
SF3B1-201ENST00000335508 DNAH2Q9P225 4427 aa3.05□□□□□ -1.92
SF3B1-201ENST00000335508 LRP2P98164 4655 aa3.04□□□□□ -1.92
SF3B1-201ENST00000335508 KRTAP4-1Q9BYQ7 146 aa3.03□□□□□ -1.92
SF3B1-201ENST00000335508 RNF213Q63HN8 5207 aa3.02□□□□□ -1.93
SF3B1-201ENST00000335508 KRTAP17-1Q9BYP8 105 aa3□□□□□ -1.93
SF3B1-201ENST00000335508 LRP1Q07954 4544 aaKnown RBP2.99□□□□□ -1.93
SF3B1-201ENST00000335508 CSMD3Q7Z407 3707 aa2.98□□□□□ -1.93
SF3B1-201ENST00000335508 FAT3Q8TDW7 4589 aa2.97□□□□□ -1.93
SF3B1-201ENST00000335508 MT2AP02795 61 aa2.97□□□□□ -1.93
SF3B1-201ENST00000335508 SPRR2GQ9BYE4 73 aa2.97□□□□□ -1.93
SF3B1-201ENST00000335508 MT1HP80294 61 aa2.97□□□□□ -1.93
SF3B1-201ENST00000335508 CRCT1Q9UGL9 99 aa2.96□□□□□ -1.94
SF3B1-201ENST00000335508 DNAH7Q8WXX0 4024 aa2.96□□□□□ -1.94
SF3B1-201ENST00000335508 INE1O15225 51 aa2.95□□□□□ -1.94
SF3B1-201ENST00000335508 HMCN2Q8NDA2 5059 aa2.93□□□□□ -1.94
SF3B1-201ENST00000335508 HECTD4Q9Y4D8 3996 aa2.92□□□□□ -1.94
SF3B1-201ENST00000335508 KRTAP10-12P60413 245 aa2.92□□□□□ -1.94
SF3B1-201ENST00000335508 FAT2Q9NYQ8 4349 aa2.9□□□□□ -1.94
SF3B1-201ENST00000335508 LORP23490 312 aaPredicted RBP2.9□□□□□ -1.94
SF3B1-201ENST00000335508 LYSTQ99698 3801 aa2.89□□□□□ -1.95
SF3B1-201ENST00000335508 KMT2AQ03164 3969 aa2.88□□□□□ -1.95
SF3B1-201ENST00000335508 MT1FP04733 61 aa2.87□□□□□ -1.95
SF3B1-201ENST00000335508 KRTAP19-8Q3LI54 63 aa2.86□□□□□ -1.95
SF3B1-201ENST00000335508 KRTAP19-4Q3LI73 84 aa2.85□□□□□ -1.95
SF3B1-201ENST00000335508 KRTAP12-3P60328 96 aa2.85□□□□□ -1.95
SF3B1-201ENST00000335508 KRTAP19-1Q8IUB9 90 aa2.84□□□□□ -1.95
SF3B1-201ENST00000335508 PKD1P98161 4303 aa2.84□□□□□ -1.95
SF3B1-201ENST00000335508 VPS13BQ7Z7G8 4022 aa2.84□□□□□ -1.96
SF3B1-201ENST00000335508 LCE2CQ5TA81 110 aa2.84□□□□□ -1.96
SF3B1-201ENST00000335508 MUC17Q685J3 4493 aa2.82□□□□□ -1.96
SF3B1-201ENST00000335508 FRAS1Q86XX4 4008 aa2.81□□□□□ -1.96
SF3B1-201ENST00000335508 FAT4Q6V0I7 4981 aa2.8□□□□□ -1.96
SF3B1-201ENST00000335508 KRTAP8-1Q8IUC2 63 aa2.8□□□□□ -1.96
SF3B1-201ENST00000335508 FSIP2Q5CZC0 6907 aa2.8□□□□□ -1.96
SF3B1-201ENST00000335508 KRTAP19-2Q3LHN2 52 aa2.79□□□□□ -1.96
SF3B1-201ENST00000335508 KRTAP9-8Q9BYQ0 159 aa2.77□□□□□ -1.97
SF3B1-201ENST00000335508 OBSCNQ5VST9 7968 aa2.75□□□□□ -1.97
SF3B1-201ENST00000335508 HSPG2P98160 4391 aa2.74□□□□□ -1.97
SF3B1-201ENST00000335508 PKHD1L1Q86WI1 4243 aa2.73□□□□□ -1.97
SF3B1-201ENST00000335508 LCE3AQ5TA76 89 aa2.72□□□□□ -1.97
SF3B1-201ENST00000335508 PKHD1P08F94 4074 aa2.7□□□□□ -1.98
SF3B1-201ENST00000335508 KRTAP9-3Q9BYQ3 159 aa2.7□□□□□ -1.98
SF3B1-201ENST00000335508 MT1BP07438 61 aa2.7□□□□□ -1.98
SF3B1-201ENST00000335508 KRTAP10-5P60370 271 aa2.68□□□□□ -1.98
SF3B1-201ENST00000335508 LCE2AQ5TA79 106 aaPredicted RBP2.68□□□□□ -1.98
SF3B1-201ENST00000335508 MUC2Q02817 5179 aa2.68□□□□□ -1.98
SF3B1-201ENST00000335508 USH2AO75445 5202 aa2.67□□□□□ -1.98
SF3B1-201ENST00000335508 LCE2BO14633 110 aa2.66□□□□□ -1.98
SF3B1-201ENST00000335508 TNXBP22105 4242 aa2.62□□□□□ -1.99
SF3B1-201ENST00000335508 MT1XP80297 61 aa2.62□□□□□ -1.99
SF3B1-201ENST00000335508 LCE2DQ5TA82 110 aaPredicted RBP2.61□□□□□ -1.99
SF3B1-201ENST00000335508 MACF1Q9UPN3 7388 aaKnown RBP2.6□□□□□ -1.99
SF3B1-201ENST00000335508 DSTQ03001 7570 aaKnown RBP2.58□□□□□ -2
SF3B1-201ENST00000335508 SPRR2FQ96RM1 72 aa2.58□□□□□ -2
SF3B1-201ENST00000335508 KMT2DO14686 5537 aa2.57□□□□□ -2
SF3B1-201ENST00000335508 KRTAP19-6Q3LI70 58 aa2.55□□□□□ -2
SF3B1-201ENST00000335508 KRTAP19-5Q3LI72 72 aa2.53□□□□□ -2
SF3B1-201ENST00000335508 MT1GP13640 62 aa2.52□□□□□ -2.01
SF3B1-201ENST00000335508 KRTAP10-7P60409 375 aaPredicted RBP2.52□□□□□ -2.01
SF3B1-201ENST00000335508 FLGP20930 4061 aaPredicted RBP2.51□□□□□ -2.01
SF3B1-201ENST00000335508 MDN1Q9NU22 5596 aa2.5□□□□□ -2.01
SF3B1-201ENST00000335508 SYNE2Q8WXH0 6885 aaKnown RBP2.48□□□□□ -2.01
SF3B1-201ENST00000335508 LCE3CQ5T5A8 94 aa2.48□□□□□ -2.01
SF3B1-201ENST00000335508 GPR98Q8WXG9 6306 aa2.46□□□□□ -2.02
SF3B1-201ENST00000335508 SPRR5A0A1B0GTR4 108 aa2.44□□□□□ -2.02
SF3B1-201ENST00000335508 KRTAP9-2Q9BYQ4 174 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms