RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 DNAH9Q9NYC9 4486 aa7.16□□□□□ -1.26
USP42-201ENST00000306177 DNAH5Q8TE73 4624 aa7.05□□□□□ -1.28
USP42-201ENST00000306177 KRTAP10-12P60413 245 aa7.04□□□□□ -1.28
USP42-201ENST00000306177 INE1O15225 51 aa7.02□□□□□ -1.29
USP42-201ENST00000306177 PLECQ15149 4684 aaKnown RBP7.02□□□□□ -1.29
USP42-201ENST00000306177 DNHD1Q96M86 4753 aa6.99□□□□□ -1.29
USP42-201ENST00000306177 DNAH7Q8WXX0 4024 aa6.94□□□□□ -1.3
USP42-201ENST00000306177 DNAH1Q9P2D7 4330 aa6.94□□□□□ -1.3
USP42-201ENST00000306177 KMT2AQ03164 3969 aa6.92□□□□□ -1.3
USP42-201ENST00000306177 PRKDCP78527 4128 aaKnown RBP6.92□□□□□ -1.3
USP42-201ENST00000306177 STARD9Q9P2P6 4700 aa6.89□□□□□ -1.31
USP42-201ENST00000306177 DNAH11Q96DT5 4516 aa6.88□□□□□ -1.31
USP42-201ENST00000306177 KRTAP23-1A1A580 65 aa6.85□□□□□ -1.31
USP42-201ENST00000306177 LORP23490 312 aaPredicted RBP6.84□□□□□ -1.31
USP42-201ENST00000306177 KRTAP12-3P60328 96 aa6.84□□□□□ -1.31
USP42-201ENST00000306177 CMYA5Q8N3K9 4069 aa6.83□□□□□ -1.32
USP42-201ENST00000306177 FRAS1Q86XX4 4008 aa6.83□□□□□ -1.32
USP42-201ENST00000306177 VPS13DQ5THJ4 4388 aa6.81□□□□□ -1.32
USP42-201ENST00000306177 DNAH17Q9UFH2 4485 aa6.77□□□□□ -1.33
USP42-201ENST00000306177 LCE3AQ5TA76 89 aa6.77□□□□□ -1.33
USP42-201ENST00000306177 CRCT1Q9UGL9 99 aa6.76□□□□□ -1.33
USP42-201ENST00000306177 DNAH8Q96JB1 4490 aa6.75□□□□□ -1.33
USP42-201ENST00000306177 DYNC1H1Q14204 4646 aaKnown RBP6.74□□□□□ -1.33
USP42-201ENST00000306177 KRTAP4-1Q9BYQ7 146 aa6.7□□□□□ -1.34
USP42-201ENST00000306177 LRP1BQ9NZR2 4599 aa6.68□□□□□ -1.34
USP42-201ENST00000306177 DNAH6Q9C0G6 4158 aa6.67□□□□□ -1.34
USP42-201ENST00000306177 FAT1Q14517 4588 aa6.66□□□□□ -1.34
USP42-201ENST00000306177 RYR1P21817 5038 aa6.61□□□□□ -1.35
USP42-201ENST00000306177 DNAH2Q9P225 4427 aa6.58□□□□□ -1.36
USP42-201ENST00000306177 DNAH3Q8TD57 4116 aa6.56□□□□□ -1.36
USP42-201ENST00000306177 HYDINQ4G0P3 5121 aa6.54□□□□□ -1.36
USP42-201ENST00000306177 MT1HP80294 61 aa6.54□□□□□ -1.36
USP42-201ENST00000306177 MYCBP2O75592 4640 aa6.54□□□□□ -1.36
USP42-201ENST00000306177 DYNC2H1Q8NCM8 4307 aaKnown RBP6.52□□□□□ -1.37
USP42-201ENST00000306177 FAT2Q9NYQ8 4349 aa6.52□□□□□ -1.37
USP42-201ENST00000306177 SACSQ9NZJ4 4579 aa6.51□□□□□ -1.37
USP42-201ENST00000306177 KRTAP8-1Q8IUC2 63 aa6.49□□□□□ -1.37
USP42-201ENST00000306177 HECTD4Q9Y4D8 3996 aa6.46□□□□□ -1.38
USP42-201ENST00000306177 PKHD1P08F94 4074 aa6.46□□□□□ -1.38
USP42-201ENST00000306177 MT2AP02795 61 aa6.45□□□□□ -1.38
USP42-201ENST00000306177 VPS13BQ7Z7G8 4022 aa6.45□□□□□ -1.38
USP42-201ENST00000306177 FAT3Q8TDW7 4589 aa6.39□□□□□ -1.39
USP42-201ENST00000306177 SPRR2GQ9BYE4 73 aa6.39□□□□□ -1.39
USP42-201ENST00000306177 APOBP04114 4563 aaKnown RBP6.36□□□□□ -1.39
USP42-201ENST00000306177 LRP1Q07954 4544 aaKnown RBP6.35□□□□□ -1.39
USP42-201ENST00000306177 KIAA1109Q2LD37 5005 aa6.34□□□□□ -1.39
USP42-201ENST00000306177 MT1FP04733 61 aa6.33□□□□□ -1.4
USP42-201ENST00000306177 KRTAP10-5P60370 271 aa6.3□□□□□ -1.4
USP42-201ENST00000306177 RYR3Q15413 4870 aa6.29□□□□□ -1.4
USP42-201ENST00000306177 KMT2CQ8NEZ4 4911 aaKnown RBP6.28□□□□□ -1.4
USP42-201ENST00000306177 KRTAP17-1Q9BYP8 105 aa6.27□□□□□ -1.41
USP42-201ENST00000306177 RYR2Q92736 4967 aa6.14□□□□□ -1.43
USP42-201ENST00000306177 KRTAP19-5Q3LI72 72 aa6.09□□□□□ -1.43
USP42-201ENST00000306177 PKD1P98161 4303 aa6.03□□□□□ -1.44
USP42-201ENST00000306177 SPRR2FQ96RM1 72 aa6.02□□□□□ -1.45
USP42-201ENST00000306177 KRTAP19-1Q8IUB9 90 aa6.01□□□□□ -1.45
USP42-201ENST00000306177 LRP2P98164 4655 aa6□□□□□ -1.45
USP42-201ENST00000306177 LCE3CQ5T5A8 94 aa6□□□□□ -1.45
USP42-201ENST00000306177 KRTAP19-8Q3LI54 63 aa5.97□□□□□ -1.45
USP42-201ENST00000306177 HERC2O95714 4834 aa5.97□□□□□ -1.45
USP42-201ENST00000306177 KRTAP10-7P60409 375 aaPredicted RBP5.96□□□□□ -1.45
USP42-201ENST00000306177 KRTAP19-4Q3LI73 84 aa5.95□□□□□ -1.46
USP42-201ENST00000306177 LPAP08519 4548 aa5.95□□□□□ -1.46
USP42-201ENST00000306177 EPPK1P58107 5090 aaKnown RBP5.94□□□□□ -1.46
USP42-201ENST00000306177 HSPG2P98160 4391 aa5.89□□□□□ -1.47
USP42-201ENST00000306177 BIRC6Q9NR09 4857 aa5.88□□□□□ -1.47
USP42-201ENST00000306177 MUC2Q02817 5179 aa5.84□□□□□ -1.47
USP42-201ENST00000306177 KRTAP9-8Q9BYQ0 159 aa5.82□□□□□ -1.48
USP42-201ENST00000306177 MT1XP80297 61 aa5.81□□□□□ -1.48
USP42-201ENST00000306177 MT1BP07438 61 aa5.79□□□□□ -1.48
USP42-201ENST00000306177 LCE2CQ5TA81 110 aa5.79□□□□□ -1.48
USP42-201ENST00000306177 PCLOQ9Y6V0 5065 aa5.77□□□□□ -1.49
USP42-201ENST00000306177 ABCA13Q86UQ4 5058 aa5.76□□□□□ -1.49
USP42-201ENST00000306177 PKHD1L1Q86WI1 4243 aa5.74□□□□□ -1.49
USP42-201ENST00000306177 HERC1Q15751 4861 aa5.73□□□□□ -1.49
USP42-201ENST00000306177 KRTAP9-3Q9BYQ3 159 aa5.68□□□□□ -1.5
USP42-201ENST00000306177 SPRR2EP22531 72 aa5.63□□□□□ -1.51
USP42-201ENST00000306177 SPRR2BP35325 72 aa5.63□□□□□ -1.51
USP42-201ENST00000306177 SPRR2AP35326 72 aa5.63□□□□□ -1.51
USP42-201ENST00000306177 RNF213Q63HN8 5207 aa5.61□□□□□ -1.51
USP42-201ENST00000306177 TNXBP22105 4242 aa5.59□□□□□ -1.51
USP42-201ENST00000306177 KRTAP4-8A0A0G2JLE6 195 aa5.57□□□□□ -1.52
USP42-201ENST00000306177 KRTAP4-8Q9BYQ9 185 aa5.57□□□□□ -1.52
USP42-201ENST00000306177 KRTAP19-2Q3LHN2 52 aa5.57□□□□□ -1.52
USP42-201ENST00000306177 FAT4Q6V0I7 4981 aa5.55□□□□□ -1.52
USP42-201ENST00000306177 MT1GP13640 62 aa5.52□□□□□ -1.53
USP42-201ENST00000306177 LCE3BQ5TA77 95 aa5.5□□□□□ -1.53
USP42-201ENST00000306177 SPRR5A0A1B0GTR4 108 aa5.49□□□□□ -1.53
USP42-201ENST00000306177 SPRR2DP22532 72 aa5.45□□□□□ -1.54
USP42-201ENST00000306177 LCE2BO14633 110 aa5.45□□□□□ -1.54
USP42-201ENST00000306177 MUC17Q685J3 4493 aa5.41□□□□□ -1.54
USP42-201ENST00000306177 UBR4Q5T4S7 5183 aa5.41□□□□□ -1.54
USP42-201ENST00000306177 FSIP2Q5CZC0 6907 aa5.37□□□□□ -1.55
USP42-201ENST00000306177 KRTAP12-4P60329 112 aa5.36□□□□□ -1.55
USP42-201ENST00000306177 FLGP20930 4061 aaPredicted RBP5.35□□□□□ -1.55
USP42-201ENST00000306177 KRTAP19-3Q7Z4W3 81 aa5.28□□□□□ -1.56
USP42-201ENST00000306177 MT1LQ93083 61 aa5.24□□□□□ -1.57
USP42-201ENST00000306177 MT1EP04732 61 aa5.22□□□□□ -1.57
USP42-201ENST00000306177 LCE3DQ9BYE3 92 aa5.22□□□□□ -1.57
USP42-201ENST00000306177 HMCN2Q8NDA2 5059 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms