RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 LCE3AQ5TA76 89 aa4.5□□□□□ -1.69
CLIP1-201ENST00000302528 KRTAP3-3Q9BYR6 98 aa4.5□□□□□ -1.69
CLIP1-201ENST00000302528 KRTAP3-2Q9BYR7 98 aa4.5□□□□□ -1.69
CLIP1-201ENST00000302528 KRTAP10-4P60372 401 aaPredicted RBP4.45□□□□□ -1.7
CLIP1-201ENST00000302528 KRTAP23-1A1A580 65 aa4.45□□□□□ -1.7
CLIP1-201ENST00000302528 DNAH17Q9UFH2 4485 aa4.43□□□□□ -1.7
CLIP1-201ENST00000302528 VPS13DQ5THJ4 4388 aa4.43□□□□□ -1.7
CLIP1-201ENST00000302528 KRTAP8-1Q8IUC2 63 aa4.41□□□□□ -1.7
CLIP1-201ENST00000302528 MT1HL1P0DM35 61 aa4.4□□□□□ -1.7
CLIP1-201ENST00000302528 DNAH3Q8TD57 4116 aa4.4□□□□□ -1.71
CLIP1-201ENST00000302528 DNAH11Q96DT5 4516 aa4.4□□□□□ -1.71
CLIP1-201ENST00000302528 DNAH8Q96JB1 4490 aa4.39□□□□□ -1.71
CLIP1-201ENST00000302528 ALMS1Q8TCU4 4167 aa4.37□□□□□ -1.71
CLIP1-201ENST00000302528 STARD9Q9P2P6 4700 aa4.34□□□□□ -1.72
CLIP1-201ENST00000302528 DNAH2Q9P225 4427 aa4.34□□□□□ -1.72
CLIP1-201ENST00000302528 DNAH5Q8TE73 4624 aa4.32□□□□□ -1.72
CLIP1-201ENST00000302528 ANK2Q01484 3957 aa4.31□□□□□ -1.72
CLIP1-201ENST00000302528 LORP23490 312 aaPredicted RBP4.3□□□□□ -1.72
CLIP1-201ENST00000302528 CMYA5Q8N3K9 4069 aa4.28□□□□□ -1.72
CLIP1-201ENST00000302528 KRTAP4-5Q9BYR2 181 aa4.26□□□□□ -1.73
CLIP1-201ENST00000302528 LRP1BQ9NZR2 4599 aa4.26□□□□□ -1.73
CLIP1-201ENST00000302528 KMT2AQ03164 3969 aa4.24□□□□□ -1.73
CLIP1-201ENST00000302528 FRAS1Q86XX4 4008 aa4.24□□□□□ -1.73
CLIP1-201ENST00000302528 DYNC2H1Q8NCM8 4307 aaKnown RBP4.22□□□□□ -1.73
CLIP1-201ENST00000302528 LYSTQ99698 3801 aa4.21□□□□□ -1.73
CLIP1-201ENST00000302528 PRKDCP78527 4128 aaKnown RBP4.19□□□□□ -1.74
CLIP1-201ENST00000302528 SACSQ9NZJ4 4579 aa4.17□□□□□ -1.74
CLIP1-201ENST00000302528 DYNC1H1Q14204 4646 aaKnown RBP4.17□□□□□ -1.74
CLIP1-201ENST00000302528 HECTD4Q9Y4D8 3996 aa4.17□□□□□ -1.74
CLIP1-201ENST00000302528 VPS13BQ7Z7G8 4022 aa4.17□□□□□ -1.74
CLIP1-201ENST00000302528 FAT1Q14517 4588 aa4.16□□□□□ -1.74
CLIP1-201ENST00000302528 KRTAP10-7P60409 375 aaPredicted RBP4.14□□□□□ -1.75
CLIP1-201ENST00000302528 DNAH7Q8WXX0 4024 aa4.14□□□□□ -1.75
CLIP1-201ENST00000302528 DNAH6Q9C0G6 4158 aa4.1□□□□□ -1.75
CLIP1-201ENST00000302528 FAT2Q9NYQ8 4349 aa4.1□□□□□ -1.75
CLIP1-201ENST00000302528 DNHD1Q96M86 4753 aa4.09□□□□□ -1.75
CLIP1-201ENST00000302528 SPRR2FQ96RM1 72 aa4.06□□□□□ -1.76
CLIP1-201ENST00000302528 APOBP04114 4563 aaKnown RBP3.99□□□□□ -1.77
CLIP1-201ENST00000302528 KRTAP19-5Q3LI72 72 aa3.97□□□□□ -1.77
CLIP1-201ENST00000302528 KRTAP4-1Q9BYQ7 146 aa3.97□□□□□ -1.77
CLIP1-201ENST00000302528 LCE3CQ5T5A8 94 aa3.95□□□□□ -1.78
CLIP1-201ENST00000302528 MYCBP2O75592 4640 aa3.94□□□□□ -1.78
CLIP1-201ENST00000302528 MT1HP80294 61 aa3.94□□□□□ -1.78
CLIP1-201ENST00000302528 MT2AP02795 61 aa3.91□□□□□ -1.78
CLIP1-201ENST00000302528 FAT3Q8TDW7 4589 aa3.91□□□□□ -1.78
CLIP1-201ENST00000302528 HYDINQ4G0P3 5121 aa3.9□□□□□ -1.79
CLIP1-201ENST00000302528 LRP1Q07954 4544 aaKnown RBP3.89□□□□□ -1.79
CLIP1-201ENST00000302528 RYR1P21817 5038 aa3.88□□□□□ -1.79
CLIP1-201ENST00000302528 SPRR2GQ9BYE4 73 aa3.88□□□□□ -1.79
CLIP1-201ENST00000302528 PKD1P98161 4303 aa3.84□□□□□ -1.79
CLIP1-201ENST00000302528 PKHD1P08F94 4074 aa3.84□□□□□ -1.79
CLIP1-201ENST00000302528 KRTAP19-4Q3LI73 84 aa3.83□□□□□ -1.8
CLIP1-201ENST00000302528 LCE3BQ5TA77 95 aa3.83□□□□□ -1.8
CLIP1-201ENST00000302528 KRTAP17-1Q9BYP8 105 aa3.82□□□□□ -1.8
CLIP1-201ENST00000302528 SPRR2EP22531 72 aa3.82□□□□□ -1.8
CLIP1-201ENST00000302528 SPRR2BP35325 72 aa3.82□□□□□ -1.8
CLIP1-201ENST00000302528 SPRR2AP35326 72 aa3.82□□□□□ -1.8
CLIP1-201ENST00000302528 MT1FP04733 61 aa3.8□□□□□ -1.8
CLIP1-201ENST00000302528 PKHD1L1Q86WI1 4243 aa3.77□□□□□ -1.81
CLIP1-201ENST00000302528 KIAA1109Q2LD37 5005 aa3.77□□□□□ -1.81
CLIP1-201ENST00000302528 KRTAP12-4P60329 112 aa3.75□□□□□ -1.81
CLIP1-201ENST00000302528 RYR3Q15413 4870 aa3.75□□□□□ -1.81
CLIP1-201ENST00000302528 RYR2Q92736 4967 aa3.74□□□□□ -1.81
CLIP1-201ENST00000302528 LRP2P98164 4655 aa3.72□□□□□ -1.81
CLIP1-201ENST00000302528 HSPG2P98160 4391 aa3.71□□□□□ -1.82
CLIP1-201ENST00000302528 SPRR2DP22532 72 aa3.7□□□□□ -1.82
CLIP1-201ENST00000302528 TNXBP22105 4242 aa3.68□□□□□ -1.82
CLIP1-201ENST00000302528 MT1GP13640 62 aa3.67□□□□□ -1.82
CLIP1-201ENST00000302528 LCE2BO14633 110 aa3.65□□□□□ -1.82
CLIP1-201ENST00000302528 KMT2CQ8NEZ4 4911 aaKnown RBP3.63□□□□□ -1.83
CLIP1-201ENST00000302528 LCE3DQ9BYE3 92 aa3.62□□□□□ -1.83
CLIP1-201ENST00000302528 KRTAP19-1Q8IUB9 90 aa3.62□□□□□ -1.83
CLIP1-201ENST00000302528 LPAP08519 4548 aa3.6□□□□□ -1.83
CLIP1-201ENST00000302528 BIRC6Q9NR09 4857 aa3.6□□□□□ -1.83
CLIP1-201ENST00000302528 SPRR5A0A1B0GTR4 108 aa3.59□□□□□ -1.83
CLIP1-201ENST00000302528 LCE3EQ5T5B0 92 aa3.57□□□□□ -1.84
CLIP1-201ENST00000302528 KRTAP19-8Q3LI54 63 aa3.53□□□□□ -1.84
CLIP1-201ENST00000302528 KRTAP19-2Q3LHN2 52 aa3.52□□□□□ -1.85
CLIP1-201ENST00000302528 HERC2O95714 4834 aa3.49□□□□□ -1.85
CLIP1-201ENST00000302528 MT1XP80297 61 aa3.48□□□□□ -1.85
CLIP1-201ENST00000302528 LCE2CQ5TA81 110 aa3.47□□□□□ -1.85
CLIP1-201ENST00000302528 MT1BP07438 61 aa3.44□□□□□ -1.86
CLIP1-201ENST00000302528 HERC1Q15751 4861 aa3.44□□□□□ -1.86
CLIP1-201ENST00000302528 KRTAP9-8Q9BYQ0 159 aa3.44□□□□□ -1.86
CLIP1-201ENST00000302528 MUC17Q685J3 4493 aa3.42□□□□□ -1.86
CLIP1-201ENST00000302528 LCE2DQ5TA82 110 aaPredicted RBP3.42□□□□□ -1.86
CLIP1-201ENST00000302528 KRTAP4-8A0A0G2JLE6 195 aa3.42□□□□□ -1.86
CLIP1-201ENST00000302528 KRTAP4-8Q9BYQ9 185 aa3.42□□□□□ -1.86
CLIP1-201ENST00000302528 FLGP20930 4061 aaPredicted RBP3.41□□□□□ -1.86
CLIP1-201ENST00000302528 KRTAP9-2Q9BYQ4 174 aa3.33□□□□□ -1.88
CLIP1-201ENST00000302528 KRTAP19-3Q7Z4W3 81 aa3.32□□□□□ -1.88
CLIP1-201ENST00000302528 KRTAP9-3Q9BYQ3 159 aa3.32□□□□□ -1.88
CLIP1-201ENST00000302528 PRM1P04553 51 aa3.31□□□□□ -1.88
CLIP1-201ENST00000302528 EPPK1P58107 5090 aaKnown RBP3.31□□□□□ -1.88
CLIP1-201ENST00000302528 LCE1BQ5T7P3 118 aa3.31□□□□□ -1.88
CLIP1-201ENST00000302528 MT3P25713 68 aa3.3□□□□□ -1.88
CLIP1-201ENST00000302528 MT4P47944 62 aa3.29□□□□□ -1.88
CLIP1-201ENST00000302528 ABCA13Q86UQ4 5058 aa3.28□□□□□ -1.88
CLIP1-201ENST00000302528 KRTAP9-6A0A140TA67 174 aa3.28□□□□□ -1.88
CLIP1-201ENST00000302528 MT1LQ93083 61 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 146.4 ms