RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 DCAF8L2P0C7V8 631 aa17.48■□□□□ 0.39
CLIP1-201ENST00000302528 PELP1Q8IZL8 1130 aaKnown RBP16.99■□□□□ 0.31
CLIP1-201ENST00000302528 NISCHQ9Y2I1 1504 aa16.65■□□□□ 0.26
CLIP1-201ENST00000302528 SUPT5HO00267 1087 aaKnown RBP16.48■□□□□ 0.23
CLIP1-201ENST00000302528 ERICH6Q7L0X2 663 aa16.38■□□□□ 0.21
CLIP1-201ENST00000302528 EHMT2Q96KQ7 1210 aa16.38■□□□□ 0.21
CLIP1-201ENST00000302528 APLP2Q06481 763 aa16.25■□□□□ 0.19
CLIP1-201ENST00000302528 CCER1Q8TC90 406 aaPredicted RBP16.23■□□□□ 0.19
CLIP1-201ENST00000302528 FAM9AQ8IZU1 332 aaPredicted RBP16.06■□□□□ 0.16
CLIP1-201ENST00000302528 CENPBP07199 599 aaPredicted RBP15.93■□□□□ 0.14
CLIP1-201ENST00000302528 TTBK1Q5TCY1 1321 aaPredicted RBP15.88■□□□□ 0.13
CLIP1-201ENST00000302528 SHROOM4Q9ULL8 1493 aa15.84■□□□□ 0.13
CLIP1-201ENST00000302528 NEFLP07196 543 aa15.77■□□□□ 0.12
CLIP1-201ENST00000302528 PCGF6Q9BYE7 350 aa15.77■□□□□ 0.12
CLIP1-201ENST00000302528 MYT1Q01538 1121 aa15.72■□□□□ 0.11
CLIP1-201ENST00000302528 RANGAP1P46060 587 aaPredicted RBP15.62■□□□□ 0.09
CLIP1-201ENST00000302528 ATP1B4Q9UN42 357 aaPredicted RBP15.61■□□□□ 0.09
CLIP1-201ENST00000302528 DAXXQ9UER7 740 aaPredicted RBP15.58■□□□□ 0.08
CLIP1-201ENST00000302528 ZEB1P37275 1124 aaPredicted RBP15.54■□□□□ 0.08
CLIP1-201ENST00000302528 YTHDC1Q96MU7 727 aaKnown RBP15.53■□□□□ 0.08
CLIP1-201ENST00000302528 UBTFP17480 764 aaKnown RBP15.24■□□□□ 0.03
CLIP1-201ENST00000302528 POLR3GLQ9BT43 218 aa15.23■□□□□ 0.03
CLIP1-201ENST00000302528 MYT1LQ9UL68 1186 aa15.19■□□□□ 0.02
CLIP1-201ENST00000302528 TRIM41Q8WV44 630 aa15.18■□□□□ 0.02
CLIP1-201ENST00000302528 ZNF316A6NFI3 1004 aaPredicted RBP15.15■□□□□ 0.02
CLIP1-201ENST00000302528 RTL5Q5HYW3 569 aaPredicted RBP15.14■□□□□ 0.01
CLIP1-201ENST00000302528 CLSPNQ9HAW4 1339 aa15.09■□□□□ 0.01
CLIP1-201ENST00000302528 CNGB1Q14028 1251 aaPredicted RBP15.07■□□□□ 0
CLIP1-201ENST00000302528 SLC4A1APQ9BWU0 796 aaKnown RBP15.03■□□□□ -0
CLIP1-201ENST00000302528 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.97□□□□□ -0.01
CLIP1-201ENST00000302528 HNRNPUL2Q1KMD3 747 aaKnown RBP14.97□□□□□ -0.01
CLIP1-201ENST00000302528 CHIC1Q5VXU3 224 aa14.96□□□□□ -0.01
CLIP1-201ENST00000302528 PPARGC1BQ86YN6 1023 aaKnown RBP14.96□□□□□ -0.01
CLIP1-201ENST00000302528 ITGAEP38570 1179 aa14.94□□□□□ -0.02
CLIP1-201ENST00000302528 ZBTB47Q9UFB7 747 aaPredicted RBP14.79□□□□□ -0.04
CLIP1-201ENST00000302528 HRCP23327 699 aa14.75□□□□□ -0.05
CLIP1-201ENST00000302528 TRIM26Q12899 539 aaPredicted RBP14.74□□□□□ -0.05
CLIP1-201ENST00000302528 BCL11AQ9H165 835 aa14.64□□□□□ -0.07
CLIP1-201ENST00000302528 SLC24A1O60721 1099 aa14.63□□□□□ -0.07
CLIP1-201ENST00000302528 BCANQ96GW7 911 aa14.58□□□□□ -0.08
CLIP1-201ENST00000302528 CDK11AQ9UQ88 783 aaPredicted RBP14.56□□□□□ -0.08
CLIP1-201ENST00000302528 CANXP27824 592 aaKnown RBP14.55□□□□□ -0.08
CLIP1-201ENST00000302528 DIEXFQ68CQ4 756 aaKnown RBP14.51□□□□□ -0.09
CLIP1-201ENST00000302528 TRIM52Q96A61 297 aa14.49□□□□□ -0.09
CLIP1-201ENST00000302528 EIF5BO60841 1220 aaKnown RBP14.47□□□□□ -0.09
CLIP1-201ENST00000302528 NEFMP07197 916 aa14.46□□□□□ -0.1
CLIP1-201ENST00000302528 ANP32BQ92688 251 aaKnown RBP14.46□□□□□ -0.1
CLIP1-201ENST00000302528 FAM50AQ14320 339 aaKnown RBP14.43□□□□□ -0.1
CLIP1-201ENST00000302528 ZNF326Q5BKZ1 582 aaKnown RBP14.42□□□□□ -0.1
CLIP1-201ENST00000302528 ANP32CO43423 234 aa14.4□□□□□ -0.1
CLIP1-201ENST00000302528 NEUROD1Q13562 356 aa14.39□□□□□ -0.11
CLIP1-201ENST00000302528 ANP32AP39687 249 aaKnown RBP14.39□□□□□ -0.11
CLIP1-201ENST00000302528 GLIPR1L2Q4G1C9 344 aa14.35□□□□□ -0.11
CLIP1-201ENST00000302528 NPM2Q86SE8 214 aaKnown RBP14.34□□□□□ -0.11
CLIP1-201ENST00000302528 HSP90AA1P07900 732 aaKnown RBP14.33□□□□□ -0.11
CLIP1-201ENST00000302528 GTF3C3Q9Y5Q9 886 aa14.32□□□□□ -0.12
CLIP1-201ENST00000302528 LOC105371045A0A1W2PR82 267 aa14.31□□□□□ -0.12
CLIP1-201ENST00000302528 CDK11BP21127 795 aaKnown RBP14.23□□□□□ -0.13
CLIP1-201ENST00000302528 UPF2Q9HAU5 1272 aaKnown RBP14.2□□□□□ -0.14
CLIP1-201ENST00000302528 ARXQ96QS3 562 aa14.1□□□□□ -0.15
CLIP1-201ENST00000302528 ESF1Q9H501 851 aaKnown RBP14.03□□□□□ -0.16
CLIP1-201ENST00000302528 FBLN2P98095 1184 aa14.02□□□□□ -0.16
CLIP1-201ENST00000302528 NBR1Q14596 966 aa13.98□□□□□ -0.17
CLIP1-201ENST00000302528 FKBP8Q14318 412 aa13.97□□□□□ -0.17
CLIP1-201ENST00000302528 STAG3Q9UJ98 1225 aa13.97□□□□□ -0.17
CLIP1-201ENST00000302528 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.97□□□□□ -0.17
CLIP1-201ENST00000302528 ZCCHC6Q5VYS8 1495 aaKnown RBP13.95□□□□□ -0.18
CLIP1-201ENST00000302528 CHGAP10645 457 aaKnown RBP13.94□□□□□ -0.18
CLIP1-201ENST00000302528 PLPPR3Q6T4P5 718 aa13.94□□□□□ -0.18
CLIP1-201ENST00000302528 ACIN1Q9UKV3 1341 aaKnown RBP13.93□□□□□ -0.18
CLIP1-201ENST00000302528 ZNF777Q9ULD5 760 aaPredicted RBP13.92□□□□□ -0.18
CLIP1-201ENST00000302528 TNNT2P45379 298 aaPredicted RBP13.91□□□□□ -0.18
CLIP1-201ENST00000302528 SALL2Q9Y467 1007 aaPredicted RBP13.91□□□□□ -0.18
CLIP1-201ENST00000302528 A0A0G2JS52 829 aa13.91□□□□□ -0.18
CLIP1-201ENST00000302528 ARID3CA6NKF2 412 aa13.91□□□□□ -0.18
CLIP1-201ENST00000302528 NCLP19338 710 aaKnown RBP13.89□□□□□ -0.19
CLIP1-201ENST00000302528 HNRNPUQ00839 825 aaKnown RBP eCLIP13.89□□□□□ -0.19
CLIP1-201ENST00000302528 CCDC136Q96JN2 1154 aa13.89□□□□□ -0.19
CLIP1-201ENST00000302528 TRIM44Q96DX7 344 aaPredicted RBP13.88□□□□□ -0.19
CLIP1-201ENST00000302528 FAM9BQ8IZU0 186 aa13.88□□□□□ -0.19
CLIP1-201ENST00000302528 MYH16Q9H6N6 1097 aa13.87□□□□□ -0.19
CLIP1-201ENST00000302528 SCAF1Q9H7N4 1312 aaKnown RBP13.87□□□□□ -0.19
CLIP1-201ENST00000302528 DCAF1Q9Y4B6 1507 aa13.86□□□□□ -0.19
CLIP1-201ENST00000302528 TULP1O00294 542 aaPredicted RBP13.84□□□□□ -0.19
CLIP1-201ENST00000302528 ZRSR1Q15695 479 aaKnown RBP13.83□□□□□ -0.2
CLIP1-201ENST00000302528 WDR43Q15061 677 aaKnown RBP eCLIP13.81□□□□□ -0.2
CLIP1-201ENST00000302528 MYO15BQ96JP2 1530 aa13.8□□□□□ -0.2
CLIP1-201ENST00000302528 PTMAP06454 111 aaKnown RBP13.8□□□□□ -0.2
CLIP1-201ENST00000302528 P3H3Q8IVL6 736 aa13.79□□□□□ -0.2
CLIP1-201ENST00000302528 GOLGA6L22H0YM25 854 aa13.79□□□□□ -0.2
CLIP1-201ENST00000302528 TMC1Q8TDI8 760 aa13.78□□□□□ -0.2
CLIP1-201ENST00000302528 DNTTIP2Q5QJE6 756 aaKnown RBP13.77□□□□□ -0.2
CLIP1-201ENST00000302528 ANP32EQ9BTT0 268 aa13.77□□□□□ -0.21
CLIP1-201ENST00000302528 TONSLQ96HA7 1378 aa13.76□□□□□ -0.21
CLIP1-201ENST00000302528 ABCC9O60706 1549 aa13.76□□□□□ -0.21
CLIP1-201ENST00000302528 BECN1Q14457 450 aa13.76□□□□□ -0.21
CLIP1-201ENST00000302528 ZBTB7CA1YPR0 619 aa13.73□□□□□ -0.21
CLIP1-201ENST00000302528 TPRNQ4KMQ1 711 aa13.71□□□□□ -0.21
CLIP1-201ENST00000302528 DDRGK1Q96HY6 314 aa13.71□□□□□ -0.22
CLIP1-201ENST00000302528 DDX10Q13206 875 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms