RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 KRTAP10-10P60014 251 aa3.19□□□□□ -1.9
VPS35-201ENST00000299138 MEGF8Q7Z7M0 2845 aa3.18□□□□□ -1.9
VPS35-201ENST00000299138 PLECQ15149 4684 aaKnown RBP3.17□□□□□ -1.9
VPS35-201ENST00000299138 DNAH3Q8TD57 4116 aa3.17□□□□□ -1.9
VPS35-201ENST00000299138 TGP01266 2768 aa3.17□□□□□ -1.9
VPS35-201ENST00000299138 ALMS1Q8TCU4 4167 aa3.16□□□□□ -1.9
VPS35-201ENST00000299138 RYR1P21817 5038 aa3.14□□□□□ -1.91
VPS35-201ENST00000299138 KRTAP12-1P59990 96 aa3.14□□□□□ -1.91
VPS35-201ENST00000299138 VPS13DQ5THJ4 4388 aa3.13□□□□□ -1.91
VPS35-201ENST00000299138 KRTAP13-4Q3LI77 160 aa3.13□□□□□ -1.91
VPS35-201ENST00000299138 RYR3Q15413 4870 aa3.12□□□□□ -1.91
VPS35-201ENST00000299138 KRTAP10-4P60372 401 aaPredicted RBP3.11□□□□□ -1.91
VPS35-201ENST00000299138 DNAH7Q8WXX0 4024 aa3.11□□□□□ -1.91
VPS35-201ENST00000299138 KRTAP19-4Q3LI73 84 aa3.1□□□□□ -1.91
VPS35-201ENST00000299138 DNAH17Q9UFH2 4485 aa3.1□□□□□ -1.91
VPS35-201ENST00000299138 DNAH1Q9P2D7 4330 aa3.09□□□□□ -1.91
VPS35-201ENST00000299138 STARD9Q9P2P6 4700 aa3.09□□□□□ -1.91
VPS35-201ENST00000299138 CRCT1Q9UGL9 99 aa3.07□□□□□ -1.92
VPS35-201ENST00000299138 DYNC2H1Q8NCM8 4307 aaKnown RBP3.07□□□□□ -1.92
VPS35-201ENST00000299138 DNAH10Q8IVF4 4471 aa3.07□□□□□ -1.92
VPS35-201ENST00000299138 DNAH2Q9P225 4427 aa3.05□□□□□ -1.92
VPS35-201ENST00000299138 SRRM2Q9UQ35 2752 aaKnown RBP3.05□□□□□ -1.92
VPS35-201ENST00000299138 DNAH5Q8TE73 4624 aa3.04□□□□□ -1.92
VPS35-201ENST00000299138 DNAH11Q96DT5 4516 aa3.03□□□□□ -1.92
VPS35-201ENST00000299138 DYNC1H1Q14204 4646 aaKnown RBP3.02□□□□□ -1.93
VPS35-201ENST00000299138 HYDINQ4G0P3 5121 aa3.01□□□□□ -1.93
VPS35-201ENST00000299138 BIRC6Q9NR09 4857 aa2.97□□□□□ -1.93
VPS35-201ENST00000299138 RYR2Q92736 4967 aa2.97□□□□□ -1.93
VPS35-201ENST00000299138 LORP23490 312 aaPredicted RBP2.96□□□□□ -1.94
VPS35-201ENST00000299138 LCE2AQ5TA79 106 aaPredicted RBP2.96□□□□□ -1.94
VPS35-201ENST00000299138 DNAH8Q96JB1 4490 aa2.96□□□□□ -1.94
VPS35-201ENST00000299138 DNAH6Q9C0G6 4158 aa2.96□□□□□ -1.94
VPS35-201ENST00000299138 KIAA1109Q2LD37 5005 aa2.95□□□□□ -1.94
VPS35-201ENST00000299138 LRP1BQ9NZR2 4599 aa2.95□□□□□ -1.94
VPS35-201ENST00000299138 MT1HL1P0DM35 61 aa2.95□□□□□ -1.94
VPS35-201ENST00000299138 PCLOQ9Y6V0 5065 aa2.94□□□□□ -1.94
VPS35-201ENST00000299138 SACSQ9NZJ4 4579 aa2.93□□□□□ -1.94
VPS35-201ENST00000299138 EPPK1P58107 5090 aaKnown RBP2.93□□□□□ -1.94
VPS35-201ENST00000299138 PKHD1P08F94 4074 aa2.93□□□□□ -1.94
VPS35-201ENST00000299138 HECTD4Q9Y4D8 3996 aa2.92□□□□□ -1.94
VPS35-201ENST00000299138 FAT2Q9NYQ8 4349 aa2.91□□□□□ -1.94
VPS35-201ENST00000299138 KMT2AQ03164 3969 aa2.9□□□□□ -1.95
VPS35-201ENST00000299138 FAT1Q14517 4588 aa2.89□□□□□ -1.95
VPS35-201ENST00000299138 KRTAP10-5P60370 271 aa2.88□□□□□ -1.95
VPS35-201ENST00000299138 KRTAP4-5Q9BYR2 181 aa2.88□□□□□ -1.95
VPS35-201ENST00000299138 HERC2O95714 4834 aa2.86□□□□□ -1.95
VPS35-201ENST00000299138 APOBP04114 4563 aaKnown RBP2.85□□□□□ -1.95
VPS35-201ENST00000299138 SPRR5A0A1B0GTR4 108 aa2.84□□□□□ -1.95
VPS35-201ENST00000299138 ABCA13Q86UQ4 5058 aa2.81□□□□□ -1.96
VPS35-201ENST00000299138 PKD1P98161 4303 aa2.8□□□□□ -1.96
VPS35-201ENST00000299138 KRTAP10-12P60413 245 aa2.8□□□□□ -1.96
VPS35-201ENST00000299138 HSPG2P98160 4391 aa2.77□□□□□ -1.97
VPS35-201ENST00000299138 KRTAP17-1Q9BYP8 105 aa2.76□□□□□ -1.97
VPS35-201ENST00000299138 KRTAP12-3P60328 96 aa2.76□□□□□ -1.97
VPS35-201ENST00000299138 VPS13BQ7Z7G8 4022 aa2.75□□□□□ -1.97
VPS35-201ENST00000299138 FAT3Q8TDW7 4589 aa2.74□□□□□ -1.97
VPS35-201ENST00000299138 LCE3AQ5TA76 89 aa2.73□□□□□ -1.97
VPS35-201ENST00000299138 LCE3BQ5TA77 95 aa2.71□□□□□ -1.98
VPS35-201ENST00000299138 HERC1Q15751 4861 aa2.7□□□□□ -1.98
VPS35-201ENST00000299138 KRTAP8-1Q8IUC2 63 aa2.7□□□□□ -1.98
VPS35-201ENST00000299138 MYCBP2O75592 4640 aa2.7□□□□□ -1.98
VPS35-201ENST00000299138 KRTAP10-7P60409 375 aaPredicted RBP2.69□□□□□ -1.98
VPS35-201ENST00000299138 SPRR2GQ9BYE4 73 aa2.69□□□□□ -1.98
VPS35-201ENST00000299138 LRP1Q07954 4544 aaKnown RBP2.69□□□□□ -1.98
VPS35-201ENST00000299138 MT3P25713 68 aa2.66□□□□□ -1.98
VPS35-201ENST00000299138 KRTAP4-1Q9BYQ7 146 aa2.64□□□□□ -1.99
VPS35-201ENST00000299138 UBR4Q5T4S7 5183 aa2.64□□□□□ -1.99
VPS35-201ENST00000299138 PKHD1L1Q86WI1 4243 aa2.64□□□□□ -1.99
VPS35-201ENST00000299138 HMCN2Q8NDA2 5059 aa2.61□□□□□ -1.99
VPS35-201ENST00000299138 KRTAP19-8Q3LI54 63 aa2.58□□□□□ -2
VPS35-201ENST00000299138 RNF213Q63HN8 5207 aa2.58□□□□□ -2
VPS35-201ENST00000299138 TNXBP22105 4242 aa2.58□□□□□ -2
VPS35-201ENST00000299138 KRTAP19-2Q3LHN2 52 aa2.56□□□□□ -2
VPS35-201ENST00000299138 LRP2P98164 4655 aa2.52□□□□□ -2.01
VPS35-201ENST00000299138 MT1HP80294 61 aa2.51□□□□□ -2.01
VPS35-201ENST00000299138 KRTAP19-1Q8IUB9 90 aa2.49□□□□□ -2.01
VPS35-201ENST00000299138 MUC2Q02817 5179 aa2.49□□□□□ -2.01
VPS35-201ENST00000299138 LCE4AQ5TA78 99 aa2.48□□□□□ -2.01
VPS35-201ENST00000299138 MUC17Q685J3 4493 aa2.47□□□□□ -2.01
VPS35-201ENST00000299138 LPAP08519 4548 aa2.47□□□□□ -2.01
VPS35-201ENST00000299138 MT2AP02795 61 aa2.45□□□□□ -2.02
VPS35-201ENST00000299138 USH2AO75445 5202 aa2.44□□□□□ -2.02
VPS35-201ENST00000299138 MT1FP04733 61 aa2.42□□□□□ -2.02
VPS35-201ENST00000299138 FAT4Q6V0I7 4981 aa2.4□□□□□ -2.03
VPS35-201ENST00000299138 LCE3CQ5T5A8 94 aa2.38□□□□□ -2.03
VPS35-201ENST00000299138 KRTAP12-4P60329 112 aa2.38□□□□□ -2.03
VPS35-201ENST00000299138 MT1XP80297 61 aa2.36□□□□□ -2.03
VPS35-201ENST00000299138 MT1BP07438 61 aa2.35□□□□□ -2.03
VPS35-201ENST00000299138 KRTAP19-5Q3LI72 72 aa2.34□□□□□ -2.03
VPS35-201ENST00000299138 KRTAP9-8Q9BYQ0 159 aa2.34□□□□□ -2.04
VPS35-201ENST00000299138 KRTAP9-6A0A140TA67 174 aa2.33□□□□□ -2.04
VPS35-201ENST00000299138 KRTAP9-7A8MTY7 169 aa2.33□□□□□ -2.04
VPS35-201ENST00000299138 LOC100996750A0A140TA64 210 aa2.32□□□□□ -2.04
VPS35-201ENST00000299138 KRTAP4-6Q9BYQ5 205 aa2.32□□□□□ -2.04
VPS35-201ENST00000299138 FLGP20930 4061 aaPredicted RBP2.3□□□□□ -2.04
VPS35-201ENST00000299138 KRTAP9-3Q9BYQ3 159 aa2.27□□□□□ -2.05
VPS35-201ENST00000299138 SPRR2FQ96RM1 72 aa2.27□□□□□ -2.05
VPS35-201ENST00000299138 KRTAP2-3P0C7H8 128 aa2.26□□□□□ -2.05
VPS35-201ENST00000299138 KRTAP2-4Q9BYR9 128 aa2.26□□□□□ -2.05
VPS35-201ENST00000299138 KRTAP2-1Q9BYU5 128 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms