RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 KRTAP13-2Q52LG2 175 aa6.54□□□□□ -1.36
SYNGAP1-201ENST00000293748 KRTAP1-4P0C5Y4 121 aa6.53□□□□□ -1.36
SYNGAP1-201ENST00000293748 A8MUU9 505 aa6.52□□□□□ -1.37
SYNGAP1-201ENST00000293748 KRTAP10-8P60410 259 aa6.52□□□□□ -1.37
SYNGAP1-201ENST00000293748 LRP1BQ9NZR2 4599 aa6.52□□□□□ -1.37
SYNGAP1-201ENST00000293748 FAT2Q9NYQ8 4349 aa6.49□□□□□ -1.37
SYNGAP1-201ENST00000293748 EPPK1P58107 5090 aaKnown RBP6.48□□□□□ -1.37
SYNGAP1-201ENST00000293748 KIAA1109Q2LD37 5005 aa6.48□□□□□ -1.37
SYNGAP1-201ENST00000293748 RYR1P21817 5038 aa6.47□□□□□ -1.37
SYNGAP1-201ENST00000293748 C20orf166-AS1Q96NR2 134 aa6.44□□□□□ -1.38
SYNGAP1-201ENST00000293748 FRAS1Q86XX4 4008 aa6.42□□□□□ -1.38
SYNGAP1-201ENST00000293748 HECTD4Q9Y4D8 3996 aa6.42□□□□□ -1.38
SYNGAP1-201ENST00000293748 MT1HL1P0DM35 61 aa6.42□□□□□ -1.38
SYNGAP1-201ENST00000293748 PKD1P98161 4303 aa6.4□□□□□ -1.38
SYNGAP1-201ENST00000293748 KRTAP17-1Q9BYP8 105 aa6.4□□□□□ -1.39
SYNGAP1-201ENST00000293748 HERC2O95714 4834 aa6.39□□□□□ -1.39
SYNGAP1-201ENST00000293748 SRRM2Q9UQ35 2752 aaKnown RBP6.38□□□□□ -1.39
SYNGAP1-201ENST00000293748 APOBP04114 4563 aaKnown RBP6.37□□□□□ -1.39
SYNGAP1-201ENST00000293748 TNP1P09430 55 aa6.37□□□□□ -1.39
SYNGAP1-201ENST00000293748 DNAH8Q96JB1 4490 aa6.37□□□□□ -1.39
SYNGAP1-201ENST00000293748 PP632Q6XCG6 107 aa6.34□□□□□ -1.39
SYNGAP1-201ENST00000293748 PKHD1P08F94 4074 aa6.32□□□□□ -1.4
SYNGAP1-201ENST00000293748 HSPG2P98160 4391 aa6.32□□□□□ -1.4
SYNGAP1-201ENST00000293748 H0YAA0 97 aa6.3□□□□□ -1.4
SYNGAP1-201ENST00000293748 C10orf95Q9H7T3 257 aa6.29□□□□□ -1.4
SYNGAP1-201ENST00000293748 FAT1Q14517 4588 aa6.28□□□□□ -1.4
SYNGAP1-201ENST00000293748 TPRXLQ17RH7 258 aa6.27□□□□□ -1.41
SYNGAP1-201ENST00000293748 P0C880 135 aa6.26□□□□□ -1.41
SYNGAP1-201ENST00000293748 VPS13BQ7Z7G8 4022 aa6.15□□□□□ -1.43
SYNGAP1-201ENST00000293748 KRTAP13-3Q3SY46 172 aa6.14□□□□□ -1.43
SYNGAP1-201ENST00000293748 XP32Q5T750 250 aa6.13□□□□□ -1.43
SYNGAP1-201ENST00000293748 ABCA13Q86UQ4 5058 aa6.13□□□□□ -1.43
SYNGAP1-201ENST00000293748 PCLOQ9Y6V0 5065 aa6.12□□□□□ -1.43
SYNGAP1-201ENST00000293748 MYCBP2O75592 4640 aa6.01□□□□□ -1.45
SYNGAP1-201ENST00000293748 PKHD1L1Q86WI1 4243 aa6□□□□□ -1.45
SYNGAP1-201ENST00000293748 FAT3Q8TDW7 4589 aa5.98□□□□□ -1.45
SYNGAP1-201ENST00000293748 LRP1Q07954 4544 aaKnown RBP5.96□□□□□ -1.45
SYNGAP1-201ENST00000293748 KRTAP12-2P59991 146 aa5.84□□□□□ -1.48
SYNGAP1-201ENST00000293748 HERC1Q15751 4861 aa5.81□□□□□ -1.48
SYNGAP1-201ENST00000293748 PRO2289Q9P1D8 64 aa5.81□□□□□ -1.48
SYNGAP1-201ENST00000293748 TNXBP22105 4242 aa5.8□□□□□ -1.48
SYNGAP1-201ENST00000293748 KRTAP12-1P59990 96 aa5.79□□□□□ -1.48
SYNGAP1-201ENST00000293748 KRTAP10-10P60014 251 aa5.79□□□□□ -1.48
SYNGAP1-201ENST00000293748 KRTAP13-4Q3LI77 160 aa5.79□□□□□ -1.48
SYNGAP1-201ENST00000293748 KRTAP3-1Q9BYR8 98 aa5.71□□□□□ -1.49
SYNGAP1-201ENST00000293748 HMCN2Q8NDA2 5059 aa5.71□□□□□ -1.5
SYNGAP1-201ENST00000293748 KRTAP10-6P60371 365 aaPredicted RBP5.62□□□□□ -1.51
SYNGAP1-201ENST00000293748 KRTAP4-1Q9BYQ7 146 aa5.62□□□□□ -1.51
SYNGAP1-201ENST00000293748 LRP2P98164 4655 aa5.6□□□□□ -1.51
SYNGAP1-201ENST00000293748 KRTAP15-1Q3LI76 137 aa5.5□□□□□ -1.53
SYNGAP1-201ENST00000293748 LPAP08519 4548 aa5.49□□□□□ -1.53
SYNGAP1-201ENST00000293748 MUC17Q685J3 4493 aa5.47□□□□□ -1.53
SYNGAP1-201ENST00000293748 MT1HP80294 61 aa5.47□□□□□ -1.53
SYNGAP1-201ENST00000293748 UBR4Q5T4S7 5183 aa5.45□□□□□ -1.54
SYNGAP1-201ENST00000293748 INE1O15225 51 aa5.45□□□□□ -1.54
SYNGAP1-201ENST00000293748 RNF213Q63HN8 5207 aa5.44□□□□□ -1.54
SYNGAP1-201ENST00000293748 KRTAP3-2Q9BYR7 98 aa5.4□□□□□ -1.54
SYNGAP1-201ENST00000293748 LCE2AQ5TA79 106 aaPredicted RBP5.38□□□□□ -1.55
SYNGAP1-201ENST00000293748 LCE2CQ5TA81 110 aa5.37□□□□□ -1.55
SYNGAP1-201ENST00000293748 KRTAP3-3Q9BYR6 98 aa5.34□□□□□ -1.55
SYNGAP1-201ENST00000293748 KRTAP19-2Q3LHN2 52 aa5.33□□□□□ -1.56
SYNGAP1-201ENST00000293748 LORP23490 312 aaPredicted RBP5.25□□□□□ -1.57
SYNGAP1-201ENST00000293748 FAT4Q6V0I7 4981 aa5.24□□□□□ -1.57
SYNGAP1-201ENST00000293748 KRTAP23-1A1A580 65 aa5.22□□□□□ -1.57
SYNGAP1-201ENST00000293748 MT2AP02795 61 aa5.18□□□□□ -1.58
SYNGAP1-201ENST00000293748 KRTAP9-2Q9BYQ4 174 aa5.18□□□□□ -1.58
SYNGAP1-201ENST00000293748 LCE2DQ5TA82 110 aaPredicted RBP5.17□□□□□ -1.58
SYNGAP1-201ENST00000293748 KRTAP10-12P60413 245 aa5.16□□□□□ -1.58
SYNGAP1-201ENST00000293748 KRTAP9-8Q9BYQ0 159 aa5.11□□□□□ -1.59
SYNGAP1-201ENST00000293748 MT1FP04733 61 aa5.1□□□□□ -1.59
SYNGAP1-201ENST00000293748 KRTAP12-3P60328 96 aa5.09□□□□□ -1.59
SYNGAP1-201ENST00000293748 MUC2Q02817 5179 aa5.08□□□□□ -1.6
SYNGAP1-201ENST00000293748 FLGP20930 4061 aaPredicted RBP5.05□□□□□ -1.6
SYNGAP1-201ENST00000293748 CRCT1Q9UGL9 99 aa5.01□□□□□ -1.61
SYNGAP1-201ENST00000293748 KRTAP9-6A0A140TA67 174 aa4.99□□□□□ -1.61
SYNGAP1-201ENST00000293748 LCE3AQ5TA76 89 aa4.99□□□□□ -1.61
SYNGAP1-201ENST00000293748 KRTAP9-3Q9BYQ3 159 aa4.97□□□□□ -1.61
SYNGAP1-201ENST00000293748 SPRR2GQ9BYE4 73 aa4.92□□□□□ -1.62
SYNGAP1-201ENST00000293748 LCE2BO14633 110 aa4.85□□□□□ -1.63
SYNGAP1-201ENST00000293748 KRTAP19-8Q3LI54 63 aa4.82□□□□□ -1.64
SYNGAP1-201ENST00000293748 KRTAP19-1Q8IUB9 90 aa4.82□□□□□ -1.64
SYNGAP1-201ENST00000293748 KRTAP19-6Q3LI70 58 aa4.75□□□□□ -1.65
SYNGAP1-201ENST00000293748 MT1BP07438 61 aa4.72□□□□□ -1.65
SYNGAP1-201ENST00000293748 KRTAP10-5P60370 271 aa4.72□□□□□ -1.65
SYNGAP1-201ENST00000293748 FSIP2Q5CZC0 6907 aa4.63□□□□□ -1.67
SYNGAP1-201ENST00000293748 KRTAP8-1Q8IUC2 63 aa4.6□□□□□ -1.67
SYNGAP1-201ENST00000293748 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.57□□□□□ -1.68
SYNGAP1-201ENST00000293748 USH2AO75445 5202 aa4.56□□□□□ -1.68
SYNGAP1-201ENST00000293748 KRTAP9-7A8MTY7 169 aa4.53□□□□□ -1.68
SYNGAP1-201ENST00000293748 MT1XP80297 61 aa4.49□□□□□ -1.69
SYNGAP1-201ENST00000293748 KRTAP19-4Q3LI73 84 aa4.48□□□□□ -1.69
SYNGAP1-201ENST00000293748 LCE3CQ5T5A8 94 aa4.45□□□□□ -1.7
SYNGAP1-201ENST00000293748 KRTAP6-3Q3LI67 103 aa4.43□□□□□ -1.7
SYNGAP1-201ENST00000293748 KRTAP19-5Q3LI72 72 aa4.41□□□□□ -1.7
SYNGAP1-201ENST00000293748 SSPOA2VEC9 5147 aa4.41□□□□□ -1.7
SYNGAP1-201ENST00000293748 SPRR2FQ96RM1 72 aa4.38□□□□□ -1.71
SYNGAP1-201ENST00000293748 FCGBPQ9Y6R7 5405 aaPredicted RBP4.36□□□□□ -1.71
SYNGAP1-201ENST00000293748 OBSCNQ5VST9 7968 aa4.31□□□□□ -1.72
SYNGAP1-201ENST00000293748 KRTAP10-7P60409 375 aaPredicted RBP4.31□□□□□ -1.72
SYNGAP1-201ENST00000293748 SPRR5A0A1B0GTR4 108 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms