RNA–Protein interactions for RNA: ENST00000273179.9

CTDSPL-201, Transcript of CTD small phosphatase like, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CTDSPL, Length 4,459 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL-201ENST00000273179 SMR3BP02814 79 aaPredicted RBP4.53□□□□□ -1.68
CTDSPL-201ENST00000273179 DNAH5Q8TE73 4624 aa4.53□□□□□ -1.68
CTDSPL-201ENST00000273179 PKHD1P08F94 4074 aa4.52□□□□□ -1.69
CTDSPL-201ENST00000273179 FAT2Q9NYQ8 4349 aa4.51□□□□□ -1.69
CTDSPL-201ENST00000273179 LRP1BQ9NZR2 4599 aa4.5□□□□□ -1.69
CTDSPL-201ENST00000273179 KRTAP13-3Q3SY46 172 aa4.5□□□□□ -1.69
CTDSPL-201ENST00000273179 C9orf92A6NGG3 77 aa4.5□□□□□ -1.69
CTDSPL-201ENST00000273179 XP32Q5T750 250 aa4.5□□□□□ -1.69
CTDSPL-201ENST00000273179 RPS29P62273 56 aaKnown RBP4.49□□□□□ -1.69
CTDSPL-201ENST00000273179 ALMS1Q8TCU4 4167 aa4.49□□□□□ -1.69
CTDSPL-201ENST00000273179 PKD1P98161 4303 aa4.45□□□□□ -1.7
CTDSPL-201ENST00000273179 VPS13BQ7Z7G8 4022 aa4.45□□□□□ -1.7
CTDSPL-201ENST00000273179 KMT2CQ8NEZ4 4911 aaKnown RBP4.43□□□□□ -1.7
CTDSPL-201ENST00000273179 SACSQ9NZJ4 4579 aa4.43□□□□□ -1.7
CTDSPL-201ENST00000273179 KRTAP13-2Q52LG2 175 aa4.42□□□□□ -1.7
CTDSPL-201ENST00000273179 KRTAP12-2P59991 146 aa4.41□□□□□ -1.7
CTDSPL-201ENST00000273179 FAT1Q14517 4588 aa4.4□□□□□ -1.71
CTDSPL-201ENST00000273179 M0QZ58 72 aa4.33□□□□□ -1.72
CTDSPL-201ENST00000273179 DYNC1H1Q14204 4646 aaKnown RBP4.33□□□□□ -1.72
CTDSPL-201ENST00000273179 KRTAP1-4P0C5Y4 121 aa4.33□□□□□ -1.72
CTDSPL-201ENST00000273179 KRTAP3-1Q9BYR8 98 aa4.31□□□□□ -1.72
CTDSPL-201ENST00000273179 Q5VSD8 79 aa4.31□□□□□ -1.72
CTDSPL-201ENST00000273179 RYR3Q15413 4870 aa4.28□□□□□ -1.72
CTDSPL-201ENST00000273179 RYR2Q92736 4967 aa4.28□□□□□ -1.72
CTDSPL-201ENST00000273179 APOBP04114 4563 aaKnown RBP4.26□□□□□ -1.73
CTDSPL-201ENST00000273179 KRTAP12-1P59990 96 aa4.26□□□□□ -1.73
CTDSPL-201ENST00000273179 LRP1Q07954 4544 aaKnown RBP4.24□□□□□ -1.73
CTDSPL-201ENST00000273179 KRTAP13-4Q3LI77 160 aa4.24□□□□□ -1.73
CTDSPL-201ENST00000273179 MYCBP2O75592 4640 aa4.19□□□□□ -1.74
CTDSPL-201ENST00000273179 KIAA1109Q2LD37 5005 aa4.16□□□□□ -1.74
CTDSPL-201ENST00000273179 PKHD1L1Q86WI1 4243 aa4.16□□□□□ -1.74
CTDSPL-201ENST00000273179 EPPK1P58107 5090 aaKnown RBP4.14□□□□□ -1.75
CTDSPL-201ENST00000273179 TNP1P09430 55 aa4.13□□□□□ -1.75
CTDSPL-201ENST00000273179 HSPG2P98160 4391 aa4.13□□□□□ -1.75
CTDSPL-201ENST00000273179 A0A1B0GVY2 172 aa4.13□□□□□ -1.75
CTDSPL-201ENST00000273179 LCE2CQ5TA81 110 aa4.12□□□□□ -1.75
CTDSPL-201ENST00000273179 FAT3Q8TDW7 4589 aa4.12□□□□□ -1.75
CTDSPL-201ENST00000273179 KRTAP10-6P60371 365 aaPredicted RBP4.11□□□□□ -1.75
CTDSPL-201ENST00000273179 KRTAP17-1Q9BYP8 105 aa4.09□□□□□ -1.76
CTDSPL-201ENST00000273179 KRTAP10-4P60372 401 aaPredicted RBP4.07□□□□□ -1.76
CTDSPL-201ENST00000273179 TNXBP22105 4242 aa4.05□□□□□ -1.76
CTDSPL-201ENST00000273179 RYR1P21817 5038 aa4.05□□□□□ -1.76
CTDSPL-201ENST00000273179 LPAP08519 4548 aa4.04□□□□□ -1.76
CTDSPL-201ENST00000273179 ABCA13Q86UQ4 5058 aa4.02□□□□□ -1.77
CTDSPL-201ENST00000273179 LCE2AQ5TA79 106 aaPredicted RBP3.98□□□□□ -1.77
CTDSPL-201ENST00000273179 LCE2DQ5TA82 110 aaPredicted RBP3.97□□□□□ -1.77
CTDSPL-201ENST00000273179 LRP2P98164 4655 aa3.96□□□□□ -1.78
CTDSPL-201ENST00000273179 KRTAP4-5Q9BYR2 181 aa3.93□□□□□ -1.78
CTDSPL-201ENST00000273179 M0R2T5 61 aa3.91□□□□□ -1.78
CTDSPL-201ENST00000273179 MUC2Q02817 5179 aa3.89□□□□□ -1.79
CTDSPL-201ENST00000273179 LCE2BO14633 110 aa3.88□□□□□ -1.79
CTDSPL-201ENST00000273179 HERC2O95714 4834 aa3.85□□□□□ -1.79
CTDSPL-201ENST00000273179 MT1HL1P0DM35 61 aa3.85□□□□□ -1.79
CTDSPL-201ENST00000273179 SPRR5A0A1B0GTR4 108 aa3.84□□□□□ -1.79
CTDSPL-201ENST00000273179 HERC1Q15751 4861 aa3.8□□□□□ -1.8
CTDSPL-201ENST00000273179 LORP23490 312 aaPredicted RBP3.8□□□□□ -1.8
CTDSPL-201ENST00000273179 PCLOQ9Y6V0 5065 aa3.77□□□□□ -1.81
CTDSPL-201ENST00000273179 BIRC6Q9NR09 4857 aa3.68□□□□□ -1.82
CTDSPL-201ENST00000273179 RNF213Q63HN8 5207 aa3.68□□□□□ -1.82
CTDSPL-201ENST00000273179 FAT4Q6V0I7 4981 aa3.68□□□□□ -1.82
CTDSPL-201ENST00000273179 MUC17Q685J3 4493 aa3.64□□□□□ -1.83
CTDSPL-201ENST00000273179 KRTAP4-1Q9BYQ7 146 aa3.63□□□□□ -1.83
CTDSPL-201ENST00000273179 UBR4Q5T4S7 5183 aa3.62□□□□□ -1.83
CTDSPL-201ENST00000273179 HMCN2Q8NDA2 5059 aa3.57□□□□□ -1.84
CTDSPL-201ENST00000273179 KRTAP10-10P60014 251 aa3.56□□□□□ -1.84
CTDSPL-201ENST00000273179 KRTAP19-4Q3LI73 84 aa3.45□□□□□ -1.86
CTDSPL-201ENST00000273179 KRTAP19-2Q3LHN2 52 aa3.43□□□□□ -1.86
CTDSPL-201ENST00000273179 FLGP20930 4061 aaPredicted RBP3.43□□□□□ -1.86
CTDSPL-201ENST00000273179 LCE3AQ5TA76 89 aa3.34□□□□□ -1.87
CTDSPL-201ENST00000273179 MT3P25713 68 aa3.33□□□□□ -1.88
CTDSPL-201ENST00000273179 KRTAP12-3P60328 96 aa3.29□□□□□ -1.88
CTDSPL-201ENST00000273179 LCE3CQ5T5A8 94 aa3.29□□□□□ -1.88
CTDSPL-201ENST00000273179 KRTAP2-2Q9BYT5 123 aa3.28□□□□□ -1.88
CTDSPL-201ENST00000273179 USH2AO75445 5202 aa3.27□□□□□ -1.89
CTDSPL-201ENST00000273179 SPRR2GQ9BYE4 73 aa3.26□□□□□ -1.89
CTDSPL-201ENST00000273179 MT1HP80294 61 aa3.25□□□□□ -1.89
CTDSPL-201ENST00000273179 KRTAP10-12P60413 245 aa3.24□□□□□ -1.89
CTDSPL-201ENST00000273179 LCE1AQ5T7P2 110 aa3.23□□□□□ -1.89
CTDSPL-201ENST00000273179 KRTAP12-4P60329 112 aa3.23□□□□□ -1.89
CTDSPL-201ENST00000273179 LCE5AQ5TCM9 118 aa3.23□□□□□ -1.89
CTDSPL-201ENST00000273179 LCE1EQ5T753 118 aa3.21□□□□□ -1.9
CTDSPL-201ENST00000273179 KRTAP10-5P60370 271 aa3.2□□□□□ -1.9
CTDSPL-201ENST00000273179 MT1FP04733 61 aa3.19□□□□□ -1.9
CTDSPL-201ENST00000273179 FSIP2Q5CZC0 6907 aa3.18□□□□□ -1.9
CTDSPL-201ENST00000273179 MT2AP02795 61 aa3.17□□□□□ -1.9
CTDSPL-201ENST00000273179 KRTAP19-1Q8IUB9 90 aa3.16□□□□□ -1.9
CTDSPL-201ENST00000273179 LCE1FQ5T754 118 aa3.16□□□□□ -1.9
CTDSPL-201ENST00000273179 KRTAP9-8Q9BYQ0 159 aa3.14□□□□□ -1.91
CTDSPL-201ENST00000273179 KMT2DO14686 5537 aa3.13□□□□□ -1.91
CTDSPL-201ENST00000273179 KRTAP19-8Q3LI54 63 aa3.09□□□□□ -1.91
CTDSPL-201ENST00000273179 KRTAP8-1Q8IUC2 63 aa3.08□□□□□ -1.92
CTDSPL-201ENST00000273179 KRTAP9-4Q9BYQ2 154 aa3.01□□□□□ -1.93
CTDSPL-201ENST00000273179 KRTAP6-3Q3LI67 103 aa3.01□□□□□ -1.93
CTDSPL-201ENST00000273179 MT1BP07438 61 aa3.01□□□□□ -1.93
CTDSPL-201ENST00000273179 LCE3EQ5T5B0 92 aa3.01□□□□□ -1.93
CTDSPL-201ENST00000273179 LCE1DQ5T752 114 aa3□□□□□ -1.93
CTDSPL-201ENST00000273179 KRTAP9-3Q9BYQ3 159 aa2.99□□□□□ -1.93
CTDSPL-201ENST00000273179 KRTAP9-6A0A140TA67 174 aa2.97□□□□□ -1.93
CTDSPL-201ENST00000273179 MT1XP80297 61 aa2.97□□□□□ -1.93
CTDSPL-201ENST00000273179 PRM1P04553 51 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 479 ms