RNA–Protein interactions for RNA: ENST00000265077.7

VCAN-201, Transcript of versican, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VCAN, Length 12,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-201ENST00000265077 VPS13BQ7Z7G8 4022 aa2.88□□□□□ -1.95
VCAN-201ENST00000265077 DNAH11Q96DT5 4516 aa2.87□□□□□ -1.95
VCAN-201ENST00000265077 KRTAP12-1P59990 96 aa2.84□□□□□ -1.95
VCAN-201ENST00000265077 FLGP20930 4061 aaPredicted RBP2.83□□□□□ -1.96
VCAN-201ENST00000265077 KRTAP13-4Q3LI77 160 aa2.82□□□□□ -1.96
VCAN-201ENST00000265077 CSMD2Q7Z408 3487 aa2.8□□□□□ -1.96
VCAN-201ENST00000265077 KRTAP10-10P60014 251 aa2.77□□□□□ -1.97
VCAN-201ENST00000265077 KRTAP10-6P60371 365 aaPredicted RBP2.77□□□□□ -1.97
VCAN-201ENST00000265077 KRTAP23-1A1A580 65 aa2.75□□□□□ -1.97
VCAN-201ENST00000265077 DNAH9Q9NYC9 4486 aa2.75□□□□□ -1.97
VCAN-201ENST00000265077 KRTAP3-1Q9BYR8 98 aa2.74□□□□□ -1.97
VCAN-201ENST00000265077 PKHD1P08F94 4074 aa2.74□□□□□ -1.97
VCAN-201ENST00000265077 A0A1B0GVY2 172 aa2.73□□□□□ -1.97
VCAN-201ENST00000265077 DYNC2H1Q8NCM8 4307 aaKnown RBP2.73□□□□□ -1.97
VCAN-201ENST00000265077 DNAH17Q9UFH2 4485 aa2.72□□□□□ -1.97
VCAN-201ENST00000265077 PLECQ15149 4684 aaKnown RBP2.68□□□□□ -1.98
VCAN-201ENST00000265077 DNAH8Q96JB1 4490 aa2.66□□□□□ -1.98
VCAN-201ENST00000265077 KRTAP3-2Q9BYR7 98 aa2.66□□□□□ -1.98
VCAN-201ENST00000265077 FAT2Q9NYQ8 4349 aa2.64□□□□□ -1.99
VCAN-201ENST00000265077 DYNC1H1Q14204 4646 aaKnown RBP2.62□□□□□ -1.99
VCAN-201ENST00000265077 PKHD1L1Q86WI1 4243 aa2.59□□□□□ -1.99
VCAN-201ENST00000265077 APOBP04114 4563 aaKnown RBP2.57□□□□□ -2
VCAN-201ENST00000265077 KRTAP3-3Q9BYR6 98 aa2.57□□□□□ -2
VCAN-201ENST00000265077 SACSQ9NZJ4 4579 aa2.56□□□□□ -2
VCAN-201ENST00000265077 DNAH5Q8TE73 4624 aa2.56□□□□□ -2
VCAN-201ENST00000265077 RYR1P21817 5038 aa2.52□□□□□ -2.01
VCAN-201ENST00000265077 STARD9Q9P2P6 4700 aa2.52□□□□□ -2.01
VCAN-201ENST00000265077 KRTAP10-12P60413 245 aa2.51□□□□□ -2.01
VCAN-201ENST00000265077 LRP1Q07954 4544 aaKnown RBP2.49□□□□□ -2.01
VCAN-201ENST00000265077 PKD1P98161 4303 aa2.48□□□□□ -2.01
VCAN-201ENST00000265077 TNXBP22105 4242 aa2.48□□□□□ -2.01
VCAN-201ENST00000265077 MT1HL1P0DM35 61 aa2.47□□□□□ -2.01
VCAN-201ENST00000265077 FAT1Q14517 4588 aa2.46□□□□□ -2.02
VCAN-201ENST00000265077 LRP1BQ9NZR2 4599 aa2.46□□□□□ -2.02
VCAN-201ENST00000265077 HSPG2P98160 4391 aa2.46□□□□□ -2.02
VCAN-201ENST00000265077 KRTAP12-3P60328 96 aa2.45□□□□□ -2.02
VCAN-201ENST00000265077 KRTAP10-4P60372 401 aaPredicted RBP2.43□□□□□ -2.02
VCAN-201ENST00000265077 FAT3Q8TDW7 4589 aa2.4□□□□□ -2.03
VCAN-201ENST00000265077 MYCBP2O75592 4640 aa2.39□□□□□ -2.03
VCAN-201ENST00000265077 LCE3AQ5TA76 89 aa2.36□□□□□ -2.03
VCAN-201ENST00000265077 RYR3Q15413 4870 aa2.32□□□□□ -2.04
VCAN-201ENST00000265077 SPRR5A0A1B0GTR4 108 aa2.31□□□□□ -2.04
VCAN-201ENST00000265077 DNHD1Q96M86 4753 aa2.3□□□□□ -2.04
VCAN-201ENST00000265077 LORP23490 312 aaPredicted RBP2.29□□□□□ -2.04
VCAN-201ENST00000265077 CRCT1Q9UGL9 99 aa2.28□□□□□ -2.05
VCAN-201ENST00000265077 KRTAP19-4Q3LI73 84 aa2.26□□□□□ -2.05
VCAN-201ENST00000265077 KRTAP4-5Q9BYR2 181 aa2.24□□□□□ -2.05
VCAN-201ENST00000265077 KRTAP10-5P60370 271 aa2.24□□□□□ -2.05
VCAN-201ENST00000265077 SPRR2GQ9BYE4 73 aa2.23□□□□□ -2.05
VCAN-201ENST00000265077 RYR2Q92736 4967 aa2.23□□□□□ -2.05
VCAN-201ENST00000265077 KRTAP8-1Q8IUC2 63 aa2.22□□□□□ -2.05
VCAN-201ENST00000265077 PCLOQ9Y6V0 5065 aa2.21□□□□□ -2.06
VCAN-201ENST00000265077 HYDINQ4G0P3 5121 aa2.21□□□□□ -2.06
VCAN-201ENST00000265077 BIRC6Q9NR09 4857 aa2.18□□□□□ -2.06
VCAN-201ENST00000265077 MUC17Q685J3 4493 aa2.16□□□□□ -2.06
VCAN-201ENST00000265077 LCE3CQ5T5A8 94 aa2.15□□□□□ -2.07
VCAN-201ENST00000265077 KRTAP4-1Q9BYQ7 146 aa2.15□□□□□ -2.07
VCAN-201ENST00000265077 KRTAP19-5Q3LI72 72 aa2.13□□□□□ -2.07
VCAN-201ENST00000265077 MT1HP80294 61 aa2.13□□□□□ -2.07
VCAN-201ENST00000265077 MT2AP02795 61 aa2.12□□□□□ -2.07
VCAN-201ENST00000265077 KMT2CQ8NEZ4 4911 aaKnown RBP2.12□□□□□ -2.07
VCAN-201ENST00000265077 LRP2P98164 4655 aa2.09□□□□□ -2.08
VCAN-201ENST00000265077 MT1FP04733 61 aa2.08□□□□□ -2.08
VCAN-201ENST00000265077 KRTAP10-7P60409 375 aaPredicted RBP2.07□□□□□ -2.08
VCAN-201ENST00000265077 KRTAP12-4P60329 112 aa2.06□□□□□ -2.08
VCAN-201ENST00000265077 KRTAP19-8Q3LI54 63 aa2.06□□□□□ -2.08
VCAN-201ENST00000265077 MT3P25713 68 aa2.03□□□□□ -2.08
VCAN-201ENST00000265077 HERC1Q15751 4861 aa2.03□□□□□ -2.08
VCAN-201ENST00000265077 HERC2O95714 4834 aa2.03□□□□□ -2.09
VCAN-201ENST00000265077 RNF213Q63HN8 5207 aa2.02□□□□□ -2.09
VCAN-201ENST00000265077 KIAA1109Q2LD37 5005 aa2.01□□□□□ -2.09
VCAN-201ENST00000265077 SPRR2FQ96RM1 72 aa2.01□□□□□ -2.09
VCAN-201ENST00000265077 KRTAP19-1Q8IUB9 90 aa2.01□□□□□ -2.09
VCAN-201ENST00000265077 MT1XP80297 61 aa2□□□□□ -2.09
VCAN-201ENST00000265077 HMCN2Q8NDA2 5059 aa1.96□□□□□ -2.1
VCAN-201ENST00000265077 ABCA13Q86UQ4 5058 aa1.95□□□□□ -2.1
VCAN-201ENST00000265077 EPPK1P58107 5090 aaKnown RBP1.95□□□□□ -2.1
VCAN-201ENST00000265077 LCE3BQ5TA77 95 aa1.93□□□□□ -2.1
VCAN-201ENST00000265077 MT1BP07438 61 aa1.91□□□□□ -2.1
VCAN-201ENST00000265077 MT1GP13640 62 aa1.9□□□□□ -2.11
VCAN-201ENST00000265077 LPAP08519 4548 aa1.9□□□□□ -2.11
VCAN-201ENST00000265077 KRTAP9-8Q9BYQ0 159 aa1.89□□□□□ -2.11
VCAN-201ENST00000265077 UBR4Q5T4S7 5183 aa1.88□□□□□ -2.11
VCAN-201ENST00000265077 LCE3DQ9BYE3 92 aa1.87□□□□□ -2.11
VCAN-201ENST00000265077 LCE3EQ5T5B0 92 aa1.87□□□□□ -2.11
VCAN-201ENST00000265077 MT1LQ93083 61 aa1.86□□□□□ -2.11
VCAN-201ENST00000265077 KRTAP9-3Q9BYQ3 159 aa1.86□□□□□ -2.11
VCAN-201ENST00000265077 SPRR2EP22531 72 aa1.85□□□□□ -2.11
VCAN-201ENST00000265077 SPRR2BP35325 72 aa1.85□□□□□ -2.11
VCAN-201ENST00000265077 SPRR2AP35326 72 aa1.85□□□□□ -2.11
VCAN-201ENST00000265077 PRM1P04553 51 aa1.84□□□□□ -2.11
VCAN-201ENST00000265077 KRTAP2-3P0C7H8 128 aa1.84□□□□□ -2.11
VCAN-201ENST00000265077 KRTAP2-4Q9BYR9 128 aa1.84□□□□□ -2.11
VCAN-201ENST00000265077 KRTAP2-1Q9BYU5 128 aa1.84□□□□□ -2.11
VCAN-201ENST00000265077 LCE2BO14633 110 aa1.83□□□□□ -2.12
VCAN-201ENST00000265077 KRTAP19-3Q7Z4W3 81 aa1.82□□□□□ -2.12
VCAN-201ENST00000265077 FAT4Q6V0I7 4981 aa1.82□□□□□ -2.12
VCAN-201ENST00000265077 LCE2CQ5TA81 110 aa1.82□□□□□ -2.12
VCAN-201ENST00000265077 SPRR2DP22532 72 aa1.81□□□□□ -2.12
VCAN-201ENST00000265077 KRTAP17-1Q9BYP8 105 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms