RNA–Protein interactions for RNA: ENST00000265077.7

VCAN-201, Transcript of versican, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VCAN, Length 12,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-201ENST00000265077 PELP1Q8IZL8 1130 aaKnown RBP9.83□□□□□ -0.84
VCAN-201ENST00000265077 MYT1Q01538 1121 aa9.8□□□□□ -0.84
VCAN-201ENST00000265077 DCAF8L2P0C7V8 631 aa9.19□□□□□ -0.94
VCAN-201ENST00000265077 NISCHQ9Y2I1 1504 aa9.18□□□□□ -0.94
VCAN-201ENST00000265077 TTBK1Q5TCY1 1321 aaPredicted RBP9.13□□□□□ -0.95
VCAN-201ENST00000265077 SUPT5HO00267 1087 aaKnown RBP8.95□□□□□ -0.98
VCAN-201ENST00000265077 CENPBP07199 599 aaPredicted RBP8.91□□□□□ -0.98
VCAN-201ENST00000265077 ERICH6Q7L0X2 663 aa8.91□□□□□ -0.98
VCAN-201ENST00000265077 HRCP23327 699 aa8.76□□□□□ -1.01
VCAN-201ENST00000265077 SHROOM4Q9ULL8 1493 aa8.75□□□□□ -1.01
VCAN-201ENST00000265077 ZEB1P37275 1124 aaPredicted RBP8.74□□□□□ -1.01
VCAN-201ENST00000265077 PCGF6Q9BYE7 350 aa8.73□□□□□ -1.01
VCAN-201ENST00000265077 CCER1Q8TC90 406 aaPredicted RBP8.68□□□□□ -1.02
VCAN-201ENST00000265077 APLP2Q06481 763 aa8.68□□□□□ -1.02
VCAN-201ENST00000265077 EHMT2Q96KQ7 1210 aa8.52□□□□□ -1.05
VCAN-201ENST00000265077 FAM9AQ8IZU1 332 aaPredicted RBP8.47□□□□□ -1.05
VCAN-201ENST00000265077 YTHDC1Q96MU7 727 aaKnown RBP8.47□□□□□ -1.05
VCAN-201ENST00000265077 NEFLP07196 543 aa8.43□□□□□ -1.06
VCAN-201ENST00000265077 PPARGC1BQ86YN6 1023 aaKnown RBP8.43□□□□□ -1.06
VCAN-201ENST00000265077 GTF3C3Q9Y5Q9 886 aa8.4□□□□□ -1.07
VCAN-201ENST00000265077 TRIM41Q8WV44 630 aa8.39□□□□□ -1.07
VCAN-201ENST00000265077 BCL11AQ9H165 835 aa8.39□□□□□ -1.07
VCAN-201ENST00000265077 ACIN1Q9UKV3 1341 aaKnown RBP8.34□□□□□ -1.07
VCAN-201ENST00000265077 TRIM26Q12899 539 aaPredicted RBP8.34□□□□□ -1.07
VCAN-201ENST00000265077 RTL5Q5HYW3 569 aaPredicted RBP8.33□□□□□ -1.08
VCAN-201ENST00000265077 SCAF1Q9H7N4 1312 aaKnown RBP8.32□□□□□ -1.08
VCAN-201ENST00000265077 GLIPR1L2Q4G1C9 344 aa8.29□□□□□ -1.08
VCAN-201ENST00000265077 UBTFP17480 764 aaKnown RBP8.28□□□□□ -1.08
VCAN-201ENST00000265077 MYT1LQ9UL68 1186 aa8.28□□□□□ -1.08
VCAN-201ENST00000265077 SLC24A1O60721 1099 aa8.2□□□□□ -1.1
VCAN-201ENST00000265077 ANP32EQ9BTT0 268 aa8.2□□□□□ -1.1
VCAN-201ENST00000265077 EIF5BO60841 1220 aaKnown RBP8.2□□□□□ -1.1
VCAN-201ENST00000265077 DIEXFQ68CQ4 756 aaKnown RBP8.19□□□□□ -1.1
VCAN-201ENST00000265077 PRKCSHP14314 528 aaPredicted RBP8.18□□□□□ -1.1
VCAN-201ENST00000265077 DAXXQ9UER7 740 aaPredicted RBP8.18□□□□□ -1.1
VCAN-201ENST00000265077 CLSPNQ9HAW4 1339 aa8.17□□□□□ -1.1
VCAN-201ENST00000265077 RANGAP1P46060 587 aaPredicted RBP8.16□□□□□ -1.1
VCAN-201ENST00000265077 ATP1B4Q9UN42 357 aaPredicted RBP8.14□□□□□ -1.11
VCAN-201ENST00000265077 NEUROD1Q13562 356 aa8.09□□□□□ -1.11
VCAN-201ENST00000265077 CHIC1Q5VXU3 224 aa8.08□□□□□ -1.12
VCAN-201ENST00000265077 CDK11AQ9UQ88 783 aaPredicted RBP8.01□□□□□ -1.13
VCAN-201ENST00000265077 LOC105371045A0A1W2PR82 267 aa8□□□□□ -1.13
VCAN-201ENST00000265077 ZNF316A6NFI3 1004 aaPredicted RBP8□□□□□ -1.13
VCAN-201ENST00000265077 BCANQ96GW7 911 aa8□□□□□ -1.13
VCAN-201ENST00000265077 HNRNPUL2Q1KMD3 747 aaKnown RBP7.95□□□□□ -1.14
VCAN-201ENST00000265077 ITGAEP38570 1179 aa7.94□□□□□ -1.14
VCAN-201ENST00000265077 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.93□□□□□ -1.14
VCAN-201ENST00000265077 ANP32AP39687 249 aaKnown RBP7.92□□□□□ -1.14
VCAN-201ENST00000265077 CSRNP3Q8WYN3 585 aa7.91□□□□□ -1.14
VCAN-201ENST00000265077 ERICH6BQ5W0A0 696 aa7.9□□□□□ -1.14
VCAN-201ENST00000265077 POLR3GLQ9BT43 218 aa7.9□□□□□ -1.15
VCAN-201ENST00000265077 ANP32CO43423 234 aa7.88□□□□□ -1.15
VCAN-201ENST00000265077 NBR1Q14596 966 aa7.88□□□□□ -1.15
VCAN-201ENST00000265077 DCAF1Q9Y4B6 1507 aa7.87□□□□□ -1.15
VCAN-201ENST00000265077 DEKP35659 375 aaKnown RBP7.83□□□□□ -1.16
VCAN-201ENST00000265077 PODXL2Q9NZ53 605 aa7.82□□□□□ -1.16
VCAN-201ENST00000265077 PKNOX2Q96KN3 472 aa7.81□□□□□ -1.16
VCAN-201ENST00000265077 RTN4Q9NQC3 1192 aaKnown RBP7.8□□□□□ -1.16
VCAN-201ENST00000265077 CCDC180Q9P1Z9 1646 aa7.8□□□□□ -1.16
VCAN-201ENST00000265077 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.79□□□□□ -1.16
VCAN-201ENST00000265077 TNNT2P45379 298 aaPredicted RBP7.79□□□□□ -1.16
VCAN-201ENST00000265077 FAM50AQ14320 339 aaKnown RBP7.78□□□□□ -1.16
VCAN-201ENST00000265077 FKBP8Q14318 412 aa7.78□□□□□ -1.16
VCAN-201ENST00000265077 NCLP19338 710 aaKnown RBP7.77□□□□□ -1.17
VCAN-201ENST00000265077 ZBTB47Q9UFB7 747 aaPredicted RBP7.76□□□□□ -1.17
VCAN-201ENST00000265077 CCDC136Q96JN2 1154 aa7.75□□□□□ -1.17
VCAN-201ENST00000265077 NEFMP07197 916 aa7.74□□□□□ -1.17
VCAN-201ENST00000265077 SLC4A1APQ9BWU0 796 aaKnown RBP7.73□□□□□ -1.17
VCAN-201ENST00000265077 CNGB1Q14028 1251 aaPredicted RBP7.73□□□□□ -1.17
VCAN-201ENST00000265077 TRIM52Q96A61 297 aa7.73□□□□□ -1.17
VCAN-201ENST00000265077 CDK11BP21127 795 aaKnown RBP7.71□□□□□ -1.17
VCAN-201ENST00000265077 NAP1L5Q96NT1 182 aaPredicted RBP7.7□□□□□ -1.18
VCAN-201ENST00000265077 SUPT16HQ9Y5B9 1047 aaKnown RBP7.7□□□□□ -1.18
VCAN-201ENST00000265077 ANP32BQ92688 251 aaKnown RBP7.69□□□□□ -1.18
VCAN-201ENST00000265077 NPM2Q86SE8 214 aaKnown RBP7.69□□□□□ -1.18
VCAN-201ENST00000265077 CANXP27824 592 aaKnown RBP7.69□□□□□ -1.18
VCAN-201ENST00000265077 NOP58Q9Y2X3 529 aaKnown RBP7.68□□□□□ -1.18
VCAN-201ENST00000265077 RSPH6AQ9H0K4 717 aa7.68□□□□□ -1.18
VCAN-201ENST00000265077 ANO8Q9HCE9 1232 aaPredicted RBP7.67□□□□□ -1.18
VCAN-201ENST00000265077 TSHZ2Q9NRE2 1034 aa7.66□□□□□ -1.18
VCAN-201ENST00000265077 VSIG10Q8N0Z9 540 aa7.66□□□□□ -1.18
VCAN-201ENST00000265077 UBE2Q2Q8WVN8 375 aa7.66□□□□□ -1.18
VCAN-201ENST00000265077 ZNF326Q5BKZ1 582 aaKnown RBP7.65□□□□□ -1.18
VCAN-201ENST00000265077 RBM19Q9Y4C8 960 aaKnown RBP7.65□□□□□ -1.18
VCAN-201ENST00000265077 HSP90AA1P07900 732 aaKnown RBP7.65□□□□□ -1.19
VCAN-201ENST00000265077 MIER1Q8N108 512 aa7.65□□□□□ -1.19
VCAN-201ENST00000265077 TRIM44Q96DX7 344 aaPredicted RBP7.64□□□□□ -1.19
VCAN-201ENST00000265077 A0A0U1RQG5 324 aaPredicted RBP7.63□□□□□ -1.19
VCAN-201ENST00000265077 SCRIBQ14160 1630 aa7.63□□□□□ -1.19
VCAN-201ENST00000265077 TONSLQ96HA7 1378 aa7.63□□□□□ -1.19
VCAN-201ENST00000265077 ZCCHC6Q5VYS8 1495 aaKnown RBP7.62□□□□□ -1.19
VCAN-201ENST00000265077 UPF2Q9HAU5 1272 aaKnown RBP7.62□□□□□ -1.19
VCAN-201ENST00000265077 PPM1GO15355 546 aaPredicted RBP7.62□□□□□ -1.19
VCAN-201ENST00000265077 HSP90AA2PQ14568 343 aaPredicted RBP7.6□□□□□ -1.19
VCAN-201ENST00000265077 DDRGK1Q96HY6 314 aa7.58□□□□□ -1.2
VCAN-201ENST00000265077 HNRNPUQ00839 825 aaKnown RBP eCLIP7.57□□□□□ -1.2
VCAN-201ENST00000265077 SALL2Q9Y467 1007 aaPredicted RBP7.57□□□□□ -1.2
VCAN-201ENST00000265077 ABCC9O60706 1549 aa7.57□□□□□ -1.2
VCAN-201ENST00000265077 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.55□□□□□ -1.2
VCAN-201ENST00000265077 EEA1Q15075 1411 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms