RNA–Protein interactions for RNA: ENST00000264723.8

CSPG5-201, Transcript of chondroitin sulfate proteoglycan 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CSPG5, Length 4,080 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG5-201ENST00000264723 HECTD4Q9Y4D8 3996 aa10.1□□□□□ -0.79
CSPG5-201ENST00000264723 TPRXLQ17RH7 258 aa10.06□□□□□ -0.8
CSPG5-201ENST00000264723 VPS13BQ7Z7G8 4022 aa10.03□□□□□ -0.8
CSPG5-201ENST00000264723 DYNC2H1Q8NCM8 4307 aaKnown RBP9.96□□□□□ -0.81
CSPG5-201ENST00000264723 KRTAP10-4P60372 401 aaPredicted RBP9.96□□□□□ -0.82
CSPG5-201ENST00000264723 KRTAP13-4Q3LI77 160 aa9.96□□□□□ -0.82
CSPG5-201ENST00000264723 DYNC1H1Q14204 4646 aaKnown RBP9.92□□□□□ -0.82
CSPG5-201ENST00000264723 MYCBP2O75592 4640 aa9.92□□□□□ -0.82
CSPG5-201ENST00000264723 HYDINQ4G0P3 5121 aa9.91□□□□□ -0.82
CSPG5-201ENST00000264723 KRTAP10-6P60371 365 aaPredicted RBP9.87□□□□□ -0.83
CSPG5-201ENST00000264723 KRTAP12-2P59991 146 aa9.83□□□□□ -0.84
CSPG5-201ENST00000264723 NDUFAF8A1L188 74 aa9.83□□□□□ -0.84
CSPG5-201ENST00000264723 MT1HL1P0DM35 61 aa9.83□□□□□ -0.84
CSPG5-201ENST00000264723 LUZP6Q538Z0 58 aa9.82□□□□□ -0.84
CSPG5-201ENST00000264723 KRTAP4-5Q9BYR2 181 aa9.81□□□□□ -0.84
CSPG5-201ENST00000264723 PKHD1P08F94 4074 aa9.79□□□□□ -0.84
CSPG5-201ENST00000264723 KRTAP3-3Q9BYR6 98 aa9.78□□□□□ -0.84
CSPG5-201ENST00000264723 ALMS1Q8TCU4 4167 aa9.76□□□□□ -0.85
CSPG5-201ENST00000264723 PLAC4Q8WY50 150 aa9.72□□□□□ -0.85
CSPG5-201ENST00000264723 LRP1Q07954 4544 aaKnown RBP9.7□□□□□ -0.86
CSPG5-201ENST00000264723 KRTAP3-2Q9BYR7 98 aa9.69□□□□□ -0.86
CSPG5-201ENST00000264723 KRTAP12-1P59990 96 aa9.64□□□□□ -0.87
CSPG5-201ENST00000264723 SACSQ9NZJ4 4579 aa9.63□□□□□ -0.87
CSPG5-201ENST00000264723 FAT3Q8TDW7 4589 aa9.59□□□□□ -0.87
CSPG5-201ENST00000264723 KIAA1109Q2LD37 5005 aa9.58□□□□□ -0.88
CSPG5-201ENST00000264723 APOBP04114 4563 aaKnown RBP9.56□□□□□ -0.88
CSPG5-201ENST00000264723 RYR1P21817 5038 aa9.54□□□□□ -0.88
CSPG5-201ENST00000264723 FAT2Q9NYQ8 4349 aa9.53□□□□□ -0.88
CSPG5-201ENST00000264723 KRTAP10-10P60014 251 aa9.43□□□□□ -0.9
CSPG5-201ENST00000264723 PKD1P98161 4303 aa9.41□□□□□ -0.9
CSPG5-201ENST00000264723 TNP1P09430 55 aa9.4□□□□□ -0.9
CSPG5-201ENST00000264723 RYR3Q15413 4870 aa9.35□□□□□ -0.91
CSPG5-201ENST00000264723 A0A0A0MQY5 61 aa9.34□□□□□ -0.91
CSPG5-201ENST00000264723 KMT2CQ8NEZ4 4911 aaKnown RBP9.32□□□□□ -0.92
CSPG5-201ENST00000264723 KRTAP17-1Q9BYP8 105 aa9.31□□□□□ -0.92
CSPG5-201ENST00000264723 LORP23490 312 aaPredicted RBP9.23□□□□□ -0.93
CSPG5-201ENST00000264723 LRP2P98164 4655 aa9.23□□□□□ -0.93
CSPG5-201ENST00000264723 RYR2Q92736 4967 aa9.18□□□□□ -0.94
CSPG5-201ENST00000264723 HSPG2P98160 4391 aa9.12□□□□□ -0.95
CSPG5-201ENST00000264723 PP632Q6XCG6 107 aa9.04□□□□□ -0.96
CSPG5-201ENST00000264723 KRTAP15-1Q3LI76 137 aa9.03□□□□□ -0.96
CSPG5-201ENST00000264723 KRTAP4-1Q9BYQ7 146 aa9.02□□□□□ -0.97
CSPG5-201ENST00000264723 LPAP08519 4548 aa8.96□□□□□ -0.98
CSPG5-201ENST00000264723 PKHD1L1Q86WI1 4243 aa8.92□□□□□ -0.98
CSPG5-201ENST00000264723 HERC2O95714 4834 aa8.81□□□□□ -1
CSPG5-201ENST00000264723 TNXBP22105 4242 aa8.76□□□□□ -1.01
CSPG5-201ENST00000264723 PRO2289Q9P1D8 64 aa8.7□□□□□ -1.02
CSPG5-201ENST00000264723 EPPK1P58107 5090 aaKnown RBP8.7□□□□□ -1.02
CSPG5-201ENST00000264723 ABCA13Q86UQ4 5058 aa8.63□□□□□ -1.03
CSPG5-201ENST00000264723 MUC2Q02817 5179 aa8.54□□□□□ -1.04
CSPG5-201ENST00000264723 MT1HP80294 61 aa8.35□□□□□ -1.07
CSPG5-201ENST00000264723 LCE3AQ5TA76 89 aa8.3□□□□□ -1.08
CSPG5-201ENST00000264723 BIRC6Q9NR09 4857 aa8.28□□□□□ -1.08
CSPG5-201ENST00000264723 MT2AP02795 61 aa8.24□□□□□ -1.09
CSPG5-201ENST00000264723 KRTAP10-12P60413 245 aa8.23□□□□□ -1.09
CSPG5-201ENST00000264723 MT1FP04733 61 aa8.19□□□□□ -1.1
CSPG5-201ENST00000264723 FAT4Q6V0I7 4981 aa8.18□□□□□ -1.1
CSPG5-201ENST00000264723 PCLOQ9Y6V0 5065 aa8.18□□□□□ -1.1
CSPG5-201ENST00000264723 HERC1Q15751 4861 aa8.17□□□□□ -1.1
CSPG5-201ENST00000264723 RNF213Q63HN8 5207 aa8.16□□□□□ -1.1
CSPG5-201ENST00000264723 KRTAP19-2Q3LHN2 52 aa8.1□□□□□ -1.11
CSPG5-201ENST00000264723 SPRR2GQ9BYE4 73 aa8.08□□□□□ -1.12
CSPG5-201ENST00000264723 KRTAP12-3P60328 96 aa8.06□□□□□ -1.12
CSPG5-201ENST00000264723 KRTAP19-1Q8IUB9 90 aa8.04□□□□□ -1.12
CSPG5-201ENST00000264723 MUC17Q685J3 4493 aa8.02□□□□□ -1.13
CSPG5-201ENST00000264723 KRTAP23-1A1A580 65 aa7.96□□□□□ -1.14
CSPG5-201ENST00000264723 LCE2CQ5TA81 110 aa7.94□□□□□ -1.14
CSPG5-201ENST00000264723 FLGP20930 4061 aaPredicted RBP7.93□□□□□ -1.14
CSPG5-201ENST00000264723 UBR4Q5T4S7 5183 aa7.86□□□□□ -1.15
CSPG5-201ENST00000264723 KRTAP9-8Q9BYQ0 159 aa7.77□□□□□ -1.17
CSPG5-201ENST00000264723 CRCT1Q9UGL9 99 aa7.76□□□□□ -1.17
CSPG5-201ENST00000264723 FSIP2Q5CZC0 6907 aa7.73□□□□□ -1.17
CSPG5-201ENST00000264723 KRTAP10-7P60409 375 aaPredicted RBP7.67□□□□□ -1.18
CSPG5-201ENST00000264723 HMCN2Q8NDA2 5059 aa7.67□□□□□ -1.18
CSPG5-201ENST00000264723 KRTAP8-1Q8IUC2 63 aa7.63□□□□□ -1.19
CSPG5-201ENST00000264723 MT1BP07438 61 aa7.62□□□□□ -1.19
CSPG5-201ENST00000264723 MT1XP80297 61 aa7.62□□□□□ -1.19
CSPG5-201ENST00000264723 KRTAP19-8Q3LI54 63 aa7.61□□□□□ -1.19
CSPG5-201ENST00000264723 KRTAP10-5P60370 271 aa7.59□□□□□ -1.19
CSPG5-201ENST00000264723 KRTAP19-5Q3LI72 72 aa7.52□□□□□ -1.21
CSPG5-201ENST00000264723 SPRR5A0A1B0GTR4 108 aa7.49□□□□□ -1.21
CSPG5-201ENST00000264723 KRTAP9-3Q9BYQ3 159 aa7.48□□□□□ -1.21
CSPG5-201ENST00000264723 INE1O15225 51 aa7.44□□□□□ -1.22
CSPG5-201ENST00000264723 KRTAP4-8A0A0G2JLE6 195 aa7.38□□□□□ -1.23
CSPG5-201ENST00000264723 KRTAP4-8Q9BYQ9 185 aa7.38□□□□□ -1.23
CSPG5-201ENST00000264723 USH2AO75445 5202 aa7.32□□□□□ -1.24
CSPG5-201ENST00000264723 LCE2BO14633 110 aa7.31□□□□□ -1.24
CSPG5-201ENST00000264723 LCE3CQ5T5A8 94 aa7.27□□□□□ -1.25
CSPG5-201ENST00000264723 KMT2DO14686 5537 aa7.2□□□□□ -1.26
CSPG5-201ENST00000264723 SPRR2FQ96RM1 72 aa7.15□□□□□ -1.26
CSPG5-201ENST00000264723 KRTAP4-7Q9BYR0 210 aa7.13□□□□□ -1.27
CSPG5-201ENST00000264723 LCE2AQ5TA79 106 aaPredicted RBP6.94□□□□□ -1.3
CSPG5-201ENST00000264723 SYNE1Q8NF91 8797 aaKnown RBP6.89□□□□□ -1.31
CSPG5-201ENST00000264723 OBSCNQ5VST9 7968 aa6.88□□□□□ -1.31
CSPG5-201ENST00000264723 DSTQ03001 7570 aaKnown RBP6.85□□□□□ -1.31
CSPG5-201ENST00000264723 MT1GP13640 62 aa6.79□□□□□ -1.32
CSPG5-201ENST00000264723 FCGBPQ9Y6R7 5405 aaPredicted RBP6.73□□□□□ -1.33
CSPG5-201ENST00000264723 KRTAP19-7Q3SYF9 63 aa6.67□□□□□ -1.34
CSPG5-201ENST00000264723 KRTAP9-6A8MVA2 160 aa6.67□□□□□ -1.34
CSPG5-201ENST00000264723 MT1LQ93083 61 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms