RNA–Protein interactions for RNA: ENST00000263073.10

SMG6-201, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMG6, Length 5,960 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-201ENST00000263073 LORP23490 312 aaPredicted RBP5.3□□□□□ -1.56
SMG6-201ENST00000263073 DNAH10Q8IVF4 4471 aa5.28□□□□□ -1.56
SMG6-201ENST00000263073 LCE3AQ5TA76 89 aa5.27□□□□□ -1.57
SMG6-201ENST00000263073 PLECQ15149 4684 aaKnown RBP5.27□□□□□ -1.57
SMG6-201ENST00000263073 DNAH3Q8TD57 4116 aa5.25□□□□□ -1.57
SMG6-201ENST00000263073 KRTAP4-5Q9BYR2 181 aa5.24□□□□□ -1.57
SMG6-201ENST00000263073 KRTAP12-3P60328 96 aa5.21□□□□□ -1.58
SMG6-201ENST00000263073 CMYA5Q8N3K9 4069 aa5.19□□□□□ -1.58
SMG6-201ENST00000263073 KRTAP10-4P60372 401 aaPredicted RBP5.17□□□□□ -1.58
SMG6-201ENST00000263073 DNAH1Q9P2D7 4330 aa5.16□□□□□ -1.58
SMG6-201ENST00000263073 STARD9Q9P2P6 4700 aa5.15□□□□□ -1.58
SMG6-201ENST00000263073 VPS13DQ5THJ4 4388 aa5.15□□□□□ -1.59
SMG6-201ENST00000263073 PRKDCP78527 4128 aaKnown RBP5.1□□□□□ -1.59
SMG6-201ENST00000263073 DNHD1Q96M86 4753 aa5.1□□□□□ -1.59
SMG6-201ENST00000263073 LYSTQ99698 3801 aa5.1□□□□□ -1.59
SMG6-201ENST00000263073 DNAH17Q9UFH2 4485 aa5.07□□□□□ -1.6
SMG6-201ENST00000263073 DNAH11Q96DT5 4516 aa5.07□□□□□ -1.6
SMG6-201ENST00000263073 KRTAP10-5P60370 271 aa5.05□□□□□ -1.6
SMG6-201ENST00000263073 DYNC2H1Q8NCM8 4307 aaKnown RBP5.03□□□□□ -1.6
SMG6-201ENST00000263073 DNAH8Q96JB1 4490 aa5.02□□□□□ -1.61
SMG6-201ENST00000263073 DNAH7Q8WXX0 4024 aa5.02□□□□□ -1.61
SMG6-201ENST00000263073 DNAH2Q9P225 4427 aa5.01□□□□□ -1.61
SMG6-201ENST00000263073 KMT2AQ03164 3969 aa4.99□□□□□ -1.61
SMG6-201ENST00000263073 LRP1BQ9NZR2 4599 aa4.99□□□□□ -1.61
SMG6-201ENST00000263073 DNAH6Q9C0G6 4158 aa4.93□□□□□ -1.62
SMG6-201ENST00000263073 DNAH5Q8TE73 4624 aa4.93□□□□□ -1.62
SMG6-201ENST00000263073 KRTAP23-1A1A580 65 aa4.93□□□□□ -1.62
SMG6-201ENST00000263073 HECTD4Q9Y4D8 3996 aa4.92□□□□□ -1.62
SMG6-201ENST00000263073 KRTAP4-1Q9BYQ7 146 aa4.87□□□□□ -1.63
SMG6-201ENST00000263073 DYNC1H1Q14204 4646 aaKnown RBP4.84□□□□□ -1.63
SMG6-201ENST00000263073 FAT1Q14517 4588 aa4.84□□□□□ -1.63
SMG6-201ENST00000263073 FRAS1Q86XX4 4008 aa4.84□□□□□ -1.63
SMG6-201ENST00000263073 KRTAP8-1Q8IUC2 63 aa4.82□□□□□ -1.64
SMG6-201ENST00000263073 HYDINQ4G0P3 5121 aa4.81□□□□□ -1.64
SMG6-201ENST00000263073 FAT2Q9NYQ8 4349 aa4.8□□□□□ -1.64
SMG6-201ENST00000263073 VPS13BQ7Z7G8 4022 aa4.77□□□□□ -1.65
SMG6-201ENST00000263073 SACSQ9NZJ4 4579 aa4.73□□□□□ -1.65
SMG6-201ENST00000263073 MT1HP80294 61 aa4.69□□□□□ -1.66
SMG6-201ENST00000263073 PKHD1P08F94 4074 aa4.68□□□□□ -1.66
SMG6-201ENST00000263073 PKD1P98161 4303 aa4.67□□□□□ -1.66
SMG6-201ENST00000263073 KRTAP19-5Q3LI72 72 aa4.67□□□□□ -1.66
SMG6-201ENST00000263073 APOBP04114 4563 aaKnown RBP4.65□□□□□ -1.66
SMG6-201ENST00000263073 KIAA1109Q2LD37 5005 aa4.65□□□□□ -1.67
SMG6-201ENST00000263073 RYR2Q92736 4967 aa4.65□□□□□ -1.67
SMG6-201ENST00000263073 MT2AP02795 61 aa4.63□□□□□ -1.67
SMG6-201ENST00000263073 MYCBP2O75592 4640 aa4.61□□□□□ -1.67
SMG6-201ENST00000263073 MT1FP04733 61 aa4.59□□□□□ -1.67
SMG6-201ENST00000263073 LRP1Q07954 4544 aaKnown RBP4.59□□□□□ -1.67
SMG6-201ENST00000263073 KMT2CQ8NEZ4 4911 aaKnown RBP4.57□□□□□ -1.68
SMG6-201ENST00000263073 SPRR2GQ9BYE4 73 aa4.57□□□□□ -1.68
SMG6-201ENST00000263073 LCE3CQ5T5A8 94 aa4.56□□□□□ -1.68
SMG6-201ENST00000263073 RYR1P21817 5038 aa4.55□□□□□ -1.68
SMG6-201ENST00000263073 RYR3Q15413 4870 aa4.55□□□□□ -1.68
SMG6-201ENST00000263073 KRTAP17-1Q9BYP8 105 aa4.5□□□□□ -1.69
SMG6-201ENST00000263073 SPRR2FQ96RM1 72 aa4.49□□□□□ -1.69
SMG6-201ENST00000263073 FAT3Q8TDW7 4589 aa4.48□□□□□ -1.69
SMG6-201ENST00000263073 KRTAP10-7P60409 375 aaPredicted RBP4.47□□□□□ -1.69
SMG6-201ENST00000263073 PKHD1L1Q86WI1 4243 aa4.4□□□□□ -1.7
SMG6-201ENST00000263073 HSPG2P98160 4391 aa4.39□□□□□ -1.71
SMG6-201ENST00000263073 LCE3BQ5TA77 95 aa4.39□□□□□ -1.71
SMG6-201ENST00000263073 LRP2P98164 4655 aa4.36□□□□□ -1.71
SMG6-201ENST00000263073 MT1GP13640 62 aa4.31□□□□□ -1.72
SMG6-201ENST00000263073 TNXBP22105 4242 aa4.31□□□□□ -1.72
SMG6-201ENST00000263073 EPPK1P58107 5090 aaKnown RBP4.29□□□□□ -1.72
SMG6-201ENST00000263073 KRTAP19-1Q8IUB9 90 aa4.29□□□□□ -1.72
SMG6-201ENST00000263073 KRTAP12-4P60329 112 aa4.28□□□□□ -1.72
SMG6-201ENST00000263073 HERC2O95714 4834 aa4.25□□□□□ -1.73
SMG6-201ENST00000263073 KRTAP4-8A0A0G2JLE6 195 aa4.25□□□□□ -1.73
SMG6-201ENST00000263073 MT1XP80297 61 aa4.25□□□□□ -1.73
SMG6-201ENST00000263073 KRTAP4-8Q9BYQ9 185 aa4.25□□□□□ -1.73
SMG6-201ENST00000263073 BIRC6Q9NR09 4857 aa4.24□□□□□ -1.73
SMG6-201ENST00000263073 ABCA13Q86UQ4 5058 aa4.21□□□□□ -1.74
SMG6-201ENST00000263073 LPAP08519 4548 aa4.2□□□□□ -1.74
SMG6-201ENST00000263073 HERC1Q15751 4861 aa4.19□□□□□ -1.74
SMG6-201ENST00000263073 SPRR2EP22531 72 aa4.16□□□□□ -1.74
SMG6-201ENST00000263073 SPRR2BP35325 72 aa4.16□□□□□ -1.74
SMG6-201ENST00000263073 SPRR2AP35326 72 aa4.16□□□□□ -1.74
SMG6-201ENST00000263073 KRTAP19-8Q3LI54 63 aa4.15□□□□□ -1.75
SMG6-201ENST00000263073 MT1BP07438 61 aa4.14□□□□□ -1.75
SMG6-201ENST00000263073 KRTAP4-7Q9BYR0 210 aa4.13□□□□□ -1.75
SMG6-201ENST00000263073 MUC17Q685J3 4493 aa4.13□□□□□ -1.75
SMG6-201ENST00000263073 SPRR5A0A1B0GTR4 108 aa4.11□□□□□ -1.75
SMG6-201ENST00000263073 KRTAP9-8Q9BYQ0 159 aa4.06□□□□□ -1.76
SMG6-201ENST00000263073 LCE2CQ5TA81 110 aa4.05□□□□□ -1.76
SMG6-201ENST00000263073 KRTAP19-2Q3LHN2 52 aa4.02□□□□□ -1.77
SMG6-201ENST00000263073 LCE3DQ9BYE3 92 aa4.02□□□□□ -1.77
SMG6-201ENST00000263073 SPRR2DP22532 72 aa3.99□□□□□ -1.77
SMG6-201ENST00000263073 MUC2Q02817 5179 aa3.98□□□□□ -1.77
SMG6-201ENST00000263073 LCE2BO14633 110 aa3.96□□□□□ -1.77
SMG6-201ENST00000263073 KRTAP19-4Q3LI73 84 aa3.95□□□□□ -1.78
SMG6-201ENST00000263073 KRTAP9-3Q9BYQ3 159 aa3.95□□□□□ -1.78
SMG6-201ENST00000263073 LCE3EQ5T5B0 92 aa3.93□□□□□ -1.78
SMG6-201ENST00000263073 LOC100996750A0A140TA64 210 aa3.91□□□□□ -1.78
SMG6-201ENST00000263073 PCLOQ9Y6V0 5065 aa3.9□□□□□ -1.79
SMG6-201ENST00000263073 HMCN2Q8NDA2 5059 aa3.89□□□□□ -1.79
SMG6-201ENST00000263073 FLGP20930 4061 aaPredicted RBP3.88□□□□□ -1.79
SMG6-201ENST00000263073 RNF213Q63HN8 5207 aa3.87□□□□□ -1.79
SMG6-201ENST00000263073 FAT4Q6V0I7 4981 aa3.86□□□□□ -1.79
SMG6-201ENST00000263073 UBR4Q5T4S7 5183 aa3.85□□□□□ -1.79
SMG6-201ENST00000263073 MT1LQ93083 61 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms