RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 LORP23490 312 aaPredicted RBP8.18□□□□□ -1.1
UPF1-201ENST00000262803 CSMD3Q7Z407 3707 aa8.14□□□□□ -1.11
UPF1-201ENST00000262803 LCE3AQ5TA76 89 aa8.08□□□□□ -1.12
UPF1-201ENST00000262803 ALMS1Q8TCU4 4167 aa8.08□□□□□ -1.12
UPF1-201ENST00000262803 ANK2Q01484 3957 aa8.06□□□□□ -1.12
UPF1-201ENST00000262803 DNAH5Q8TE73 4624 aa8.05□□□□□ -1.12
UPF1-201ENST00000262803 DNAH9Q9NYC9 4486 aa8.02□□□□□ -1.13
UPF1-201ENST00000262803 KRTAP8-1Q8IUC2 63 aa8.01□□□□□ -1.13
UPF1-201ENST00000262803 DNHD1Q96M86 4753 aa7.99□□□□□ -1.13
UPF1-201ENST00000262803 CMYA5Q8N3K9 4069 aa7.94□□□□□ -1.14
UPF1-201ENST00000262803 DNAH1Q9P2D7 4330 aa7.89□□□□□ -1.15
UPF1-201ENST00000262803 PLECQ15149 4684 aaKnown RBP7.88□□□□□ -1.15
UPF1-201ENST00000262803 DNAH10Q8IVF4 4471 aa7.88□□□□□ -1.15
UPF1-201ENST00000262803 DNAH11Q96DT5 4516 aa7.87□□□□□ -1.15
UPF1-201ENST00000262803 KRTAP4-1Q9BYQ7 146 aa7.8□□□□□ -1.16
UPF1-201ENST00000262803 PRKDCP78527 4128 aaKnown RBP7.74□□□□□ -1.17
UPF1-201ENST00000262803 DNAH3Q8TD57 4116 aa7.74□□□□□ -1.17
UPF1-201ENST00000262803 KRTAP19-4Q3LI73 84 aa7.72□□□□□ -1.17
UPF1-201ENST00000262803 KRTAP10-5P60370 271 aa7.71□□□□□ -1.18
UPF1-201ENST00000262803 DNAH17Q9UFH2 4485 aa7.7□□□□□ -1.18
UPF1-201ENST00000262803 FAT1Q14517 4588 aa7.69□□□□□ -1.18
UPF1-201ENST00000262803 LYSTQ99698 3801 aa7.68□□□□□ -1.18
UPF1-201ENST00000262803 VPS13DQ5THJ4 4388 aa7.67□□□□□ -1.18
UPF1-201ENST00000262803 MT1HP80294 61 aa7.66□□□□□ -1.18
UPF1-201ENST00000262803 DYNC1H1Q14204 4646 aaKnown RBP7.63□□□□□ -1.19
UPF1-201ENST00000262803 SPRR2GQ9BYE4 73 aa7.62□□□□□ -1.19
UPF1-201ENST00000262803 DNAH2Q9P225 4427 aa7.6□□□□□ -1.19
UPF1-201ENST00000262803 DNAH8Q96JB1 4490 aa7.56□□□□□ -1.2
UPF1-201ENST00000262803 STARD9Q9P2P6 4700 aa7.56□□□□□ -1.2
UPF1-201ENST00000262803 MT2AP02795 61 aa7.55□□□□□ -1.2
UPF1-201ENST00000262803 LRP1BQ9NZR2 4599 aa7.55□□□□□ -1.2
UPF1-201ENST00000262803 DNAH7Q8WXX0 4024 aa7.54□□□□□ -1.2
UPF1-201ENST00000262803 RYR1P21817 5038 aa7.5□□□□□ -1.21
UPF1-201ENST00000262803 KRTAP10-7P60409 375 aaPredicted RBP7.48□□□□□ -1.21
UPF1-201ENST00000262803 KMT2AQ03164 3969 aa7.44□□□□□ -1.22
UPF1-201ENST00000262803 SACSQ9NZJ4 4579 aa7.44□□□□□ -1.22
UPF1-201ENST00000262803 MT1FP04733 61 aa7.39□□□□□ -1.23
UPF1-201ENST00000262803 DYNC2H1Q8NCM8 4307 aaKnown RBP7.35□□□□□ -1.23
UPF1-201ENST00000262803 FAT2Q9NYQ8 4349 aa7.34□□□□□ -1.24
UPF1-201ENST00000262803 SPRR2FQ96RM1 72 aa7.33□□□□□ -1.24
UPF1-201ENST00000262803 APOBP04114 4563 aaKnown RBP7.3□□□□□ -1.24
UPF1-201ENST00000262803 HYDINQ4G0P3 5121 aa7.28□□□□□ -1.24
UPF1-201ENST00000262803 KRTAP19-5Q3LI72 72 aa7.25□□□□□ -1.25
UPF1-201ENST00000262803 LCE3CQ5T5A8 94 aa7.25□□□□□ -1.25
UPF1-201ENST00000262803 MYCBP2O75592 4640 aa7.16□□□□□ -1.26
UPF1-201ENST00000262803 KMT2CQ8NEZ4 4911 aaKnown RBP7.15□□□□□ -1.26
UPF1-201ENST00000262803 VPS13BQ7Z7G8 4022 aa7.14□□□□□ -1.27
UPF1-201ENST00000262803 DNAH6Q9C0G6 4158 aa7.12□□□□□ -1.27
UPF1-201ENST00000262803 KIAA1109Q2LD37 5005 aa7.11□□□□□ -1.27
UPF1-201ENST00000262803 FRAS1Q86XX4 4008 aa7.11□□□□□ -1.27
UPF1-201ENST00000262803 KRTAP19-8Q3LI54 63 aa7.09□□□□□ -1.27
UPF1-201ENST00000262803 HECTD4Q9Y4D8 3996 aa7.09□□□□□ -1.28
UPF1-201ENST00000262803 RYR3Q15413 4870 aa7.06□□□□□ -1.28
UPF1-201ENST00000262803 KRTAP19-1Q8IUB9 90 aa7.06□□□□□ -1.28
UPF1-201ENST00000262803 KRTAP17-1Q9BYP8 105 aa7.04□□□□□ -1.28
UPF1-201ENST00000262803 PKHD1P08F94 4074 aa7.02□□□□□ -1.29
UPF1-201ENST00000262803 SPRR2EP22531 72 aa6.97□□□□□ -1.29
UPF1-201ENST00000262803 SPRR2BP35325 72 aa6.97□□□□□ -1.29
UPF1-201ENST00000262803 SPRR2AP35326 72 aa6.97□□□□□ -1.29
UPF1-201ENST00000262803 RYR2Q92736 4967 aa6.96□□□□□ -1.29
UPF1-201ENST00000262803 HERC1Q15751 4861 aa6.93□□□□□ -1.3
UPF1-201ENST00000262803 LRP1Q07954 4544 aaKnown RBP6.92□□□□□ -1.3
UPF1-201ENST00000262803 PKD1P98161 4303 aa6.91□□□□□ -1.3
UPF1-201ENST00000262803 FAT3Q8TDW7 4589 aa6.9□□□□□ -1.31
UPF1-201ENST00000262803 MT1XP80297 61 aa6.84□□□□□ -1.31
UPF1-201ENST00000262803 SPRR2DP22532 72 aa6.8□□□□□ -1.32
UPF1-201ENST00000262803 MT1BP07438 61 aa6.78□□□□□ -1.32
UPF1-201ENST00000262803 KRTAP12-4P60329 112 aa6.77□□□□□ -1.33
UPF1-201ENST00000262803 LCE2BO14633 110 aa6.76□□□□□ -1.33
UPF1-201ENST00000262803 EPPK1P58107 5090 aaKnown RBP6.74□□□□□ -1.33
UPF1-201ENST00000262803 KRTAP9-8Q9BYQ0 159 aa6.72□□□□□ -1.33
UPF1-201ENST00000262803 MT1GP13640 62 aa6.72□□□□□ -1.33
UPF1-201ENST00000262803 HSPG2P98160 4391 aa6.68□□□□□ -1.34
UPF1-201ENST00000262803 LRP2P98164 4655 aa6.66□□□□□ -1.34
UPF1-201ENST00000262803 SPRR5A0A1B0GTR4 108 aa6.64□□□□□ -1.35
UPF1-201ENST00000262803 HERC2O95714 4834 aa6.63□□□□□ -1.35
UPF1-201ENST00000262803 LCE2CQ5TA81 110 aa6.63□□□□□ -1.35
UPF1-201ENST00000262803 LCE3BQ5TA77 95 aa6.6□□□□□ -1.35
UPF1-201ENST00000262803 KRTAP4-8A0A0G2JLE6 195 aa6.58□□□□□ -1.36
UPF1-201ENST00000262803 KRTAP4-8Q9BYQ9 185 aa6.58□□□□□ -1.36
UPF1-201ENST00000262803 KRTAP9-3Q9BYQ3 159 aa6.55□□□□□ -1.36
UPF1-201ENST00000262803 PCLOQ9Y6V0 5065 aa6.47□□□□□ -1.37
UPF1-201ENST00000262803 LCE3DQ9BYE3 92 aa6.42□□□□□ -1.38
UPF1-201ENST00000262803 PKHD1L1Q86WI1 4243 aa6.38□□□□□ -1.39
UPF1-201ENST00000262803 BIRC6Q9NR09 4857 aa6.37□□□□□ -1.39
UPF1-201ENST00000262803 ABCA13Q86UQ4 5058 aa6.37□□□□□ -1.39
UPF1-201ENST00000262803 KRTAP19-3Q7Z4W3 81 aa6.36□□□□□ -1.39
UPF1-201ENST00000262803 LCE3EQ5T5B0 92 aa6.36□□□□□ -1.39
UPF1-201ENST00000262803 KRTAP19-2Q3LHN2 52 aa6.34□□□□□ -1.39
UPF1-201ENST00000262803 LPAP08519 4548 aa6.31□□□□□ -1.4
UPF1-201ENST00000262803 MT1LQ93083 61 aa6.3□□□□□ -1.4
UPF1-201ENST00000262803 TNXBP22105 4242 aa6.27□□□□□ -1.41
UPF1-201ENST00000262803 KRTAP4-7Q9BYR0 210 aa6.23□□□□□ -1.41
UPF1-201ENST00000262803 MUC17Q685J3 4493 aa6.21□□□□□ -1.42
UPF1-201ENST00000262803 LCE2DQ5TA82 110 aaPredicted RBP6.2□□□□□ -1.42
UPF1-201ENST00000262803 MT1EP04732 61 aa6.15□□□□□ -1.42
UPF1-201ENST00000262803 MT3P25713 68 aa6.12□□□□□ -1.43
UPF1-201ENST00000262803 FLGP20930 4061 aaPredicted RBP6.08□□□□□ -1.44
UPF1-201ENST00000262803 KRTAP19-6Q3LI70 58 aa6.07□□□□□ -1.44
UPF1-201ENST00000262803 SYNE1Q8NF91 8797 aaKnown RBP6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms