RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 KRTAP23-1A1A580 65 aa4.88□□□□□ -1.63
MSH6-201ENST00000234420 FBN3Q75N90 2809 aa4.88□□□□□ -1.63
MSH6-201ENST00000234420 KRTAP12-3P60328 96 aa4.86□□□□□ -1.63
MSH6-201ENST00000234420 CMYA5Q8N3K9 4069 aa4.84□□□□□ -1.63
MSH6-201ENST00000234420 ALMS1Q8TCU4 4167 aa4.84□□□□□ -1.63
MSH6-201ENST00000234420 KRTAP3-2Q9BYR7 98 aa4.82□□□□□ -1.64
MSH6-201ENST00000234420 KMT2AQ03164 3969 aa4.82□□□□□ -1.64
MSH6-201ENST00000234420 LCE3AQ5TA76 89 aa4.8□□□□□ -1.64
MSH6-201ENST00000234420 KRTAP3-3Q9BYR6 98 aa4.75□□□□□ -1.65
MSH6-201ENST00000234420 SPRR2FQ96RM1 72 aa4.73□□□□□ -1.65
MSH6-201ENST00000234420 VPS13BQ7Z7G8 4022 aa4.69□□□□□ -1.66
MSH6-201ENST00000234420 MT1HL1P0DM35 61 aa4.68□□□□□ -1.66
MSH6-201ENST00000234420 DNAH7Q8WXX0 4024 aa4.66□□□□□ -1.66
MSH6-201ENST00000234420 KRTAP10-7P60409 375 aaPredicted RBP4.61□□□□□ -1.67
MSH6-201ENST00000234420 DNAH2Q9P225 4427 aa4.61□□□□□ -1.67
MSH6-201ENST00000234420 DNAH3Q8TD57 4116 aa4.6□□□□□ -1.67
MSH6-201ENST00000234420 SPRR2EP22531 72 aa4.58□□□□□ -1.68
MSH6-201ENST00000234420 SPRR2BP35325 72 aa4.58□□□□□ -1.68
MSH6-201ENST00000234420 SPRR2AP35326 72 aa4.58□□□□□ -1.68
MSH6-201ENST00000234420 DNAH1Q9P2D7 4330 aa4.57□□□□□ -1.68
MSH6-201ENST00000234420 PRKDCP78527 4128 aaKnown RBP4.57□□□□□ -1.68
MSH6-201ENST00000234420 DNAH6Q9C0G6 4158 aa4.45□□□□□ -1.7
MSH6-201ENST00000234420 DNAH10Q8IVF4 4471 aa4.41□□□□□ -1.7
MSH6-201ENST00000234420 SPRR2DP22532 72 aa4.4□□□□□ -1.71
MSH6-201ENST00000234420 SPRR5A0A1B0GTR4 108 aa4.39□□□□□ -1.71
MSH6-201ENST00000234420 MT1HP80294 61 aa4.38□□□□□ -1.71
MSH6-201ENST00000234420 KRTAP10-4P60372 401 aaPredicted RBP4.37□□□□□ -1.71
MSH6-201ENST00000234420 FAT2Q9NYQ8 4349 aa4.36□□□□□ -1.71
MSH6-201ENST00000234420 DNAH9Q9NYC9 4486 aa4.35□□□□□ -1.71
MSH6-201ENST00000234420 LCE3BQ5TA77 95 aa4.34□□□□□ -1.71
MSH6-201ENST00000234420 KRTAP19-5Q3LI72 72 aa4.3□□□□□ -1.72
MSH6-201ENST00000234420 HECTD4Q9Y4D8 3996 aa4.29□□□□□ -1.72
MSH6-201ENST00000234420 LCE2BO14633 110 aa4.25□□□□□ -1.73
MSH6-201ENST00000234420 KRTAP4-1Q9BYQ7 146 aa4.24□□□□□ -1.73
MSH6-201ENST00000234420 LCE3CQ5T5A8 94 aa4.18□□□□□ -1.74
MSH6-201ENST00000234420 DNAH8Q96JB1 4490 aa4.16□□□□□ -1.74
MSH6-201ENST00000234420 MT4P47944 62 aa4.14□□□□□ -1.75
MSH6-201ENST00000234420 MT2AP02795 61 aa4.13□□□□□ -1.75
MSH6-201ENST00000234420 KRTAP12-4P60329 112 aa4.13□□□□□ -1.75
MSH6-201ENST00000234420 FLGP20930 4061 aaPredicted RBP4.11□□□□□ -1.75
MSH6-201ENST00000234420 DNAH17Q9UFH2 4485 aa4.11□□□□□ -1.75
MSH6-201ENST00000234420 MT1GP13640 62 aa4.11□□□□□ -1.75
MSH6-201ENST00000234420 DNAH11Q96DT5 4516 aa4.1□□□□□ -1.75
MSH6-201ENST00000234420 LCE2CQ5TA81 110 aa4.1□□□□□ -1.75
MSH6-201ENST00000234420 MT1FP04733 61 aa4.1□□□□□ -1.75
MSH6-201ENST00000234420 VPS13DQ5THJ4 4388 aa4.09□□□□□ -1.75
MSH6-201ENST00000234420 DYNC2H1Q8NCM8 4307 aaKnown RBP4.07□□□□□ -1.76
MSH6-201ENST00000234420 LCE2DQ5TA82 110 aaPredicted RBP4.05□□□□□ -1.76
MSH6-201ENST00000234420 PKHD1P08F94 4074 aa4.04□□□□□ -1.76
MSH6-201ENST00000234420 PKD1P98161 4303 aa4□□□□□ -1.77
MSH6-201ENST00000234420 STARD9Q9P2P6 4700 aa3.99□□□□□ -1.77
MSH6-201ENST00000234420 KRTAP17-1Q9BYP8 105 aa3.97□□□□□ -1.77
MSH6-201ENST00000234420 LPAP08519 4548 aa3.97□□□□□ -1.77
MSH6-201ENST00000234420 PKHD1L1Q86WI1 4243 aa3.94□□□□□ -1.78
MSH6-201ENST00000234420 KRTAP19-1Q8IUB9 90 aa3.94□□□□□ -1.78
MSH6-201ENST00000234420 SPRR2GQ9BYE4 73 aa3.93□□□□□ -1.78
MSH6-201ENST00000234420 TNXBP22105 4242 aa3.91□□□□□ -1.78
MSH6-201ENST00000234420 LCE1BQ5T7P3 118 aa3.89□□□□□ -1.79
MSH6-201ENST00000234420 PLECQ15149 4684 aaKnown RBP3.89□□□□□ -1.79
MSH6-201ENST00000234420 KRTAP4-8A0A0G2JLE6 195 aa3.87□□□□□ -1.79
MSH6-201ENST00000234420 KRTAP4-8Q9BYQ9 185 aa3.87□□□□□ -1.79
MSH6-201ENST00000234420 LCE3DQ9BYE3 92 aa3.84□□□□□ -1.79
MSH6-201ENST00000234420 LRP1BQ9NZR2 4599 aa3.83□□□□□ -1.8
MSH6-201ENST00000234420 LCE3EQ5T5B0 92 aa3.82□□□□□ -1.8
MSH6-201ENST00000234420 LCE1DQ5T752 114 aa3.81□□□□□ -1.8
MSH6-201ENST00000234420 KRTAP9-2Q9BYQ4 174 aa3.77□□□□□ -1.81
MSH6-201ENST00000234420 KRTAP19-4Q3LI73 84 aa3.76□□□□□ -1.81
MSH6-201ENST00000234420 FAT1Q14517 4588 aa3.76□□□□□ -1.81
MSH6-201ENST00000234420 FAT3Q8TDW7 4589 aa3.76□□□□□ -1.81
MSH6-201ENST00000234420 HSPG2P98160 4391 aa3.74□□□□□ -1.81
MSH6-201ENST00000234420 DNAH5Q8TE73 4624 aa3.73□□□□□ -1.81
MSH6-201ENST00000234420 LCE5AQ5TCM9 118 aa3.7□□□□□ -1.82
MSH6-201ENST00000234420 SACSQ9NZJ4 4579 aa3.7□□□□□ -1.82
MSH6-201ENST00000234420 PRM1P04553 51 aa3.69□□□□□ -1.82
MSH6-201ENST00000234420 RYR1P21817 5038 aa3.66□□□□□ -1.82
MSH6-201ENST00000234420 DNHD1Q96M86 4753 aa3.65□□□□□ -1.82
MSH6-201ENST00000234420 DYNC1H1Q14204 4646 aaKnown RBP3.64□□□□□ -1.83
MSH6-201ENST00000234420 APOBP04114 4563 aaKnown RBP3.64□□□□□ -1.83
MSH6-201ENST00000234420 KRTAP4-7Q9BYR0 210 aa3.63□□□□□ -1.83
MSH6-201ENST00000234420 KRTAP20-1Q3LI63 56 aa3.61□□□□□ -1.83
MSH6-201ENST00000234420 MT1XP80297 61 aa3.6□□□□□ -1.83
MSH6-201ENST00000234420 KRTAP9-6A0A140TA67 174 aa3.6□□□□□ -1.83
MSH6-201ENST00000234420 MYCBP2O75592 4640 aa3.6□□□□□ -1.83
MSH6-201ENST00000234420 LCE1CQ5T751 118 aa3.59□□□□□ -1.83
MSH6-201ENST00000234420 LCE1EQ5T753 118 aa3.59□□□□□ -1.83
MSH6-201ENST00000234420 LCE1FQ5T754 118 aa3.59□□□□□ -1.83
MSH6-201ENST00000234420 LCE1AQ5T7P2 110 aa3.59□□□□□ -1.83
MSH6-201ENST00000234420 LOC100996750A0A140TA64 210 aa3.58□□□□□ -1.84
MSH6-201ENST00000234420 SYNE2Q8WXH0 6885 aaKnown RBP3.56□□□□□ -1.84
MSH6-201ENST00000234420 KRTAP19-6Q3LI70 58 aa3.54□□□□□ -1.84
MSH6-201ENST00000234420 LRP1Q07954 4544 aaKnown RBP3.54□□□□□ -1.84
MSH6-201ENST00000234420 KRTAP4-9Q9BYQ8 210 aa3.52□□□□□ -1.85
MSH6-201ENST00000234420 KRTAP4-3Q9BYR4 195 aa3.49□□□□□ -1.85
MSH6-201ENST00000234420 MT3P25713 68 aa3.49□□□□□ -1.85
MSH6-201ENST00000234420 KRTAP9-8Q9BYQ0 159 aa3.49□□□□□ -1.85
MSH6-201ENST00000234420 KRTAP19-8Q3LI54 63 aa3.48□□□□□ -1.85
MSH6-201ENST00000234420 KRTAP19-3Q7Z4W3 81 aa3.48□□□□□ -1.85
MSH6-201ENST00000234420 MT1BP07438 61 aa3.43□□□□□ -1.86
MSH6-201ENST00000234420 KRTAP9-7A8MTY7 169 aa3.42□□□□□ -1.86
MSH6-201ENST00000234420 KRTAP9-3Q9BYQ3 159 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms