RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 DCAF8L2P0C7V8 631 aa19.66■□□□□ 0.74
MSH6-201ENST00000234420 EHMT2Q96KQ7 1210 aa18.48■□□□□ 0.55
MSH6-201ENST00000234420 PELP1Q8IZL8 1130 aaKnown RBP18.25■□□□□ 0.51
MSH6-201ENST00000234420 ERICH6Q7L0X2 663 aa17.78■□□□□ 0.44
MSH6-201ENST00000234420 MYT1Q01538 1121 aa17.7■□□□□ 0.42
MSH6-201ENST00000234420 TTBK1Q5TCY1 1321 aaPredicted RBP17.67■□□□□ 0.42
MSH6-201ENST00000234420 SUPT5HO00267 1087 aaKnown RBP17.66■□□□□ 0.42
MSH6-201ENST00000234420 RANGAP1P46060 587 aaPredicted RBP17.56■□□□□ 0.4
MSH6-201ENST00000234420 ATP1B4Q9UN42 357 aaPredicted RBP17.47■□□□□ 0.39
MSH6-201ENST00000234420 SHROOM4Q9ULL8 1493 aa17.4■□□□□ 0.38
MSH6-201ENST00000234420 CCER1Q8TC90 406 aaPredicted RBP17.39■□□□□ 0.37
MSH6-201ENST00000234420 CHIC1Q5VXU3 224 aa17.38■□□□□ 0.37
MSH6-201ENST00000234420 FAM9AQ8IZU1 332 aaPredicted RBP17.36■□□□□ 0.37
MSH6-201ENST00000234420 APLP2Q06481 763 aa17.24■□□□□ 0.35
MSH6-201ENST00000234420 CENPBP07199 599 aaPredicted RBP17.21■□□□□ 0.35
MSH6-201ENST00000234420 MYT1LQ9UL68 1186 aa17.2■□□□□ 0.34
MSH6-201ENST00000234420 PCGF6Q9BYE7 350 aa16.87■□□□□ 0.29
MSH6-201ENST00000234420 YTHDC1Q96MU7 727 aaKnown RBP16.85■□□□□ 0.29
MSH6-201ENST00000234420 CNGB1Q14028 1251 aaPredicted RBP16.84■□□□□ 0.29
MSH6-201ENST00000234420 NEFLP07196 543 aa16.83■□□□□ 0.28
MSH6-201ENST00000234420 SLC4A1APQ9BWU0 796 aaKnown RBP16.82■□□□□ 0.28
MSH6-201ENST00000234420 POLR3GLQ9BT43 218 aa16.77■□□□□ 0.27
MSH6-201ENST00000234420 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.65■□□□□ 0.26
MSH6-201ENST00000234420 HNRNPUL2Q1KMD3 747 aaKnown RBP16.65■□□□□ 0.26
MSH6-201ENST00000234420 DAXXQ9UER7 740 aaPredicted RBP16.63■□□□□ 0.25
MSH6-201ENST00000234420 ZEB1P37275 1124 aaPredicted RBP16.53■□□□□ 0.24
MSH6-201ENST00000234420 PLPPR3Q6T4P5 718 aa16.52■□□□□ 0.24
MSH6-201ENST00000234420 SLC24A1O60721 1099 aa16.52■□□□□ 0.24
MSH6-201ENST00000234420 BCL11AQ9H165 835 aa16.47■□□□□ 0.23
MSH6-201ENST00000234420 RTL5Q5HYW3 569 aaPredicted RBP16.41■□□□□ 0.22
MSH6-201ENST00000234420 PPARGC1BQ86YN6 1023 aaKnown RBP16.41■□□□□ 0.22
MSH6-201ENST00000234420 ITGAEP38570 1179 aa16.36■□□□□ 0.21
MSH6-201ENST00000234420 UBTFP17480 764 aaKnown RBP16.36■□□□□ 0.21
MSH6-201ENST00000234420 BCANQ96GW7 911 aa16.27■□□□□ 0.2
MSH6-201ENST00000234420 ZNF316A6NFI3 1004 aaPredicted RBP16.21■□□□□ 0.19
MSH6-201ENST00000234420 EIF5BO60841 1220 aaKnown RBP16.16■□□□□ 0.18
MSH6-201ENST00000234420 A0A0G2JS52 829 aa16.02■□□□□ 0.15
MSH6-201ENST00000234420 CLSPNQ9HAW4 1339 aa16.02■□□□□ 0.15
MSH6-201ENST00000234420 HRCP23327 699 aa16■□□□□ 0.15
MSH6-201ENST00000234420 TRIM41Q8WV44 630 aa16■□□□□ 0.15
MSH6-201ENST00000234420 PLEKHG5O94827 1062 aa15.96■□□□□ 0.15
MSH6-201ENST00000234420 FBLN2P98095 1184 aa15.93■□□□□ 0.14
MSH6-201ENST00000234420 SCAF1Q9H7N4 1312 aaKnown RBP15.92■□□□□ 0.14
MSH6-201ENST00000234420 GLIPR1L2Q4G1C9 344 aa15.91■□□□□ 0.14
MSH6-201ENST00000234420 SENP3Q9H4L4 574 aaPredicted RBP15.83■□□□□ 0.13
MSH6-201ENST00000234420 GTF3C3Q9Y5Q9 886 aa15.81■□□□□ 0.12
MSH6-201ENST00000234420 ZNF326Q5BKZ1 582 aaKnown RBP15.73■□□□□ 0.11
MSH6-201ENST00000234420 ZBTB47Q9UFB7 747 aaPredicted RBP15.71■□□□□ 0.11
MSH6-201ENST00000234420 NISCHQ9Y2I1 1504 aa15.7■□□□□ 0.1
MSH6-201ENST00000234420 ARID3CA6NKF2 412 aa15.7■□□□□ 0.1
MSH6-201ENST00000234420 TULP1O00294 542 aaPredicted RBP15.69■□□□□ 0.1
MSH6-201ENST00000234420 CDK11AQ9UQ88 783 aaPredicted RBP15.69■□□□□ 0.1
MSH6-201ENST00000234420 TRIM26Q12899 539 aaPredicted RBP15.67■□□□□ 0.1
MSH6-201ENST00000234420 DIEXFQ68CQ4 756 aaKnown RBP15.66■□□□□ 0.1
MSH6-201ENST00000234420 TRIM52Q96A61 297 aa15.65■□□□□ 0.1
MSH6-201ENST00000234420 NCBP3Q53F19 620 aaKnown RBP15.62■□□□□ 0.09
MSH6-201ENST00000234420 ZBTB7CA1YPR0 619 aa15.62■□□□□ 0.09
MSH6-201ENST00000234420 FAM50AQ14320 339 aaKnown RBP15.61■□□□□ 0.09
MSH6-201ENST00000234420 ESF1Q9H501 851 aaKnown RBP15.61■□□□□ 0.09
MSH6-201ENST00000234420 STAG3Q9UJ98 1225 aa15.53■□□□□ 0.08
MSH6-201ENST00000234420 NEUROD1Q13562 356 aa15.52■□□□□ 0.08
MSH6-201ENST00000234420 CANXP27824 592 aaKnown RBP15.52■□□□□ 0.08
MSH6-201ENST00000234420 ANP32AP39687 249 aaKnown RBP15.49■□□□□ 0.07
MSH6-201ENST00000234420 NPM2Q86SE8 214 aaKnown RBP15.49■□□□□ 0.07
MSH6-201ENST00000234420 CHGAP10645 457 aaKnown RBP15.48■□□□□ 0.07
MSH6-201ENST00000234420 ANP32BQ92688 251 aaKnown RBP15.47■□□□□ 0.07
MSH6-201ENST00000234420 NBR1Q14596 966 aa15.42■□□□□ 0.06
MSH6-201ENST00000234420 NEFMP07197 916 aa15.4■□□□□ 0.06
MSH6-201ENST00000234420 ARXQ96QS3 562 aa15.39■□□□□ 0.05
MSH6-201ENST00000234420 PABPN1Q86U42 306 aaKnown RBP eCLIP15.39■□□□□ 0.05
MSH6-201ENST00000234420 C14orf37Q86TY3 774 aa15.37■□□□□ 0.05
MSH6-201ENST00000234420 ZNF777Q9ULD5 760 aaPredicted RBP15.33■□□□□ 0.04
MSH6-201ENST00000234420 ACIN1Q9UKV3 1341 aaKnown RBP15.31■□□□□ 0.04
MSH6-201ENST00000234420 HAP1P54257 671 aaPredicted RBP15.3■□□□□ 0.04
MSH6-201ENST00000234420 TAOK2Q9UL54 1235 aa15.27■□□□□ 0.03
MSH6-201ENST00000234420 P3H3Q8IVL6 736 aa15.25■□□□□ 0.03
MSH6-201ENST00000234420 TNNT2P45379 298 aaPredicted RBP15.24■□□□□ 0.03
MSH6-201ENST00000234420 AMER1Q5JTC6 1135 aaPredicted RBP15.22■□□□□ 0.03
MSH6-201ENST00000234420 NPHP1O15259 732 aa15.22■□□□□ 0.03
MSH6-201ENST00000234420 HSP90AA1P07900 732 aaKnown RBP15.21■□□□□ 0.03
MSH6-201ENST00000234420 CDK11BP21127 795 aaKnown RBP15.17■□□□□ 0.02
MSH6-201ENST00000234420 ANP32CO43423 234 aa15.17■□□□□ 0.02
MSH6-201ENST00000234420 SALL2Q9Y467 1007 aaPredicted RBP15.14■□□□□ 0.01
MSH6-201ENST00000234420 RTN4Q9NQC3 1192 aaKnown RBP15.13■□□□□ 0.01
MSH6-201ENST00000234420 FKBP8Q14318 412 aa15.13■□□□□ 0.01
MSH6-201ENST00000234420 ARID4BQ4LE39 1312 aaPredicted RBP15.12■□□□□ 0.01
MSH6-201ENST00000234420 LOC105371045A0A1W2PR82 267 aa15.12■□□□□ 0.01
MSH6-201ENST00000234420 TPRNQ4KMQ1 711 aa15.11■□□□□ 0.01
MSH6-201ENST00000234420 TRHP20396 242 aaPredicted RBP15.1■□□□□ 0.01
MSH6-201ENST00000234420 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.1■□□□□ 0.01
MSH6-201ENST00000234420 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.1■□□□□ 0.011e-10■■■□□ 14.8
MSH6-201ENST00000234420 NPM1P06748 294 aaKnown RBP eCLIP15.09■□□□□ 0.01
MSH6-201ENST00000234420 LMOD2Q6P5Q4 547 aa15.05■□□□□ -0
MSH6-201ENST00000234420 TRIM44Q96DX7 344 aaPredicted RBP15.01□□□□□ -0.01
MSH6-201ENST00000234420 NAP1L5Q96NT1 182 aaPredicted RBP15.01□□□□□ -0.01
MSH6-201ENST00000234420 CLSTN1O94985 981 aa15.01□□□□□ -0.01
MSH6-201ENST00000234420 UPF2Q9HAU5 1272 aaKnown RBP15□□□□□ -0.01
MSH6-201ENST00000234420 ABCC9O60706 1549 aa14.95□□□□□ -0.02
MSH6-201ENST00000234420 ANP32EQ9BTT0 268 aa14.94□□□□□ -0.02
MSH6-201ENST00000234420 PRM3Q9NNZ6 103 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms