RNA–Protein interactions for RNA: ENST00000233027.9

NEK4-201, Transcript of NIMA related kinase 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK4, Length 6,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK4-201ENST00000233027 KRTAP12-3P60328 96 aa5.77□□□□□ -1.49
NEK4-201ENST00000233027 AKAP9Q99996 3911 aa5.74□□□□□ -1.49
NEK4-201ENST00000233027 KRTAP23-1A1A580 65 aa5.62□□□□□ -1.51
NEK4-201ENST00000233027 DNAH9Q9NYC9 4486 aa5.62□□□□□ -1.51
NEK4-201ENST00000233027 DNAH1Q9P2D7 4330 aa5.59□□□□□ -1.52
NEK4-201ENST00000233027 ZNF469Q96JG9 3925 aaPredicted RBP5.54□□□□□ -1.52
NEK4-201ENST00000233027 DNAH10Q8IVF4 4471 aa5.48□□□□□ -1.53
NEK4-201ENST00000233027 KRTAP10-5P60370 271 aa5.48□□□□□ -1.53
NEK4-201ENST00000233027 DNAH5Q8TE73 4624 aa5.46□□□□□ -1.54
NEK4-201ENST00000233027 KRTAP4-1Q9BYQ7 146 aa5.44□□□□□ -1.54
NEK4-201ENST00000233027 PLECQ15149 4684 aaKnown RBP5.43□□□□□ -1.54
NEK4-201ENST00000233027 DNAH2Q9P225 4427 aa5.43□□□□□ -1.54
NEK4-201ENST00000233027 KRTAP8-1Q8IUC2 63 aa5.4□□□□□ -1.55
NEK4-201ENST00000233027 DNAH17Q9UFH2 4485 aa5.37□□□□□ -1.55
NEK4-201ENST00000233027 DNAH11Q96DT5 4516 aa5.36□□□□□ -1.55
NEK4-201ENST00000233027 DNAH3Q8TD57 4116 aa5.36□□□□□ -1.55
NEK4-201ENST00000233027 DNAH8Q96JB1 4490 aa5.32□□□□□ -1.56
NEK4-201ENST00000233027 VPS13DQ5THJ4 4388 aa5.32□□□□□ -1.56
NEK4-201ENST00000233027 MT1HP80294 61 aa5.3□□□□□ -1.56
NEK4-201ENST00000233027 ANK2Q01484 3957 aa5.26□□□□□ -1.57
NEK4-201ENST00000233027 MT2AP02795 61 aa5.22□□□□□ -1.57
NEK4-201ENST00000233027 LRP1BQ9NZR2 4599 aa5.2□□□□□ -1.58
NEK4-201ENST00000233027 STARD9Q9P2P6 4700 aa5.2□□□□□ -1.58
NEK4-201ENST00000233027 FAT2Q9NYQ8 4349 aa5.19□□□□□ -1.58
NEK4-201ENST00000233027 SPRR2GQ9BYE4 73 aa5.19□□□□□ -1.58
NEK4-201ENST00000233027 SACSQ9NZJ4 4579 aa5.17□□□□□ -1.58
NEK4-201ENST00000233027 DYNC2H1Q8NCM8 4307 aaKnown RBP5.17□□□□□ -1.58
NEK4-201ENST00000233027 KRTAP19-5Q3LI72 72 aa5.16□□□□□ -1.58
NEK4-201ENST00000233027 DYNC1H1Q14204 4646 aaKnown RBP5.15□□□□□ -1.58
NEK4-201ENST00000233027 MT1FP04733 61 aa5.15□□□□□ -1.59
NEK4-201ENST00000233027 FRAS1Q86XX4 4008 aa5.15□□□□□ -1.59
NEK4-201ENST00000233027 FAT1Q14517 4588 aa5.12□□□□□ -1.59
NEK4-201ENST00000233027 KMT2AQ03164 3969 aa5.11□□□□□ -1.59
NEK4-201ENST00000233027 VPS13BQ7Z7G8 4022 aa5.08□□□□□ -1.6
NEK4-201ENST00000233027 LCE3CQ5T5A8 94 aa5.07□□□□□ -1.6
NEK4-201ENST00000233027 PRKDCP78527 4128 aaKnown RBP5.03□□□□□ -1.6
NEK4-201ENST00000233027 SPRR2FQ96RM1 72 aa5.01□□□□□ -1.61
NEK4-201ENST00000233027 APOBP04114 4563 aaKnown RBP4.99□□□□□ -1.61
NEK4-201ENST00000233027 DNAH7Q8WXX0 4024 aa4.97□□□□□ -1.61
NEK4-201ENST00000233027 KRTAP10-7P60409 375 aaPredicted RBP4.96□□□□□ -1.62
NEK4-201ENST00000233027 CMYA5Q8N3K9 4069 aa4.95□□□□□ -1.62
NEK4-201ENST00000233027 DNHD1Q96M86 4753 aa4.94□□□□□ -1.62
NEK4-201ENST00000233027 RYR1P21817 5038 aa4.91□□□□□ -1.62
NEK4-201ENST00000233027 DNAH6Q9C0G6 4158 aa4.91□□□□□ -1.62
NEK4-201ENST00000233027 LYSTQ99698 3801 aa4.9□□□□□ -1.62
NEK4-201ENST00000233027 KRTAP17-1Q9BYP8 105 aa4.83□□□□□ -1.64
NEK4-201ENST00000233027 HECTD4Q9Y4D8 3996 aa4.83□□□□□ -1.64
NEK4-201ENST00000233027 KRTAP19-1Q8IUB9 90 aa4.82□□□□□ -1.64
NEK4-201ENST00000233027 LCE3BQ5TA77 95 aa4.78□□□□□ -1.64
NEK4-201ENST00000233027 FAT3Q8TDW7 4589 aa4.78□□□□□ -1.64
NEK4-201ENST00000233027 MT1XP80297 61 aa4.77□□□□□ -1.65
NEK4-201ENST00000233027 KRTAP19-8Q3LI54 63 aa4.76□□□□□ -1.65
NEK4-201ENST00000233027 MYCBP2O75592 4640 aa4.75□□□□□ -1.65
NEK4-201ENST00000233027 MT1GP13640 62 aa4.72□□□□□ -1.65
NEK4-201ENST00000233027 RYR3Q15413 4870 aa4.7□□□□□ -1.66
NEK4-201ENST00000233027 SPRR2EP22531 72 aa4.68□□□□□ -1.66
NEK4-201ENST00000233027 SPRR2BP35325 72 aa4.68□□□□□ -1.66
NEK4-201ENST00000233027 SPRR2AP35326 72 aa4.68□□□□□ -1.66
NEK4-201ENST00000233027 LRP1Q07954 4544 aaKnown RBP4.68□□□□□ -1.66
NEK4-201ENST00000233027 MT1BP07438 61 aa4.67□□□□□ -1.66
NEK4-201ENST00000233027 KRTAP19-4Q3LI73 84 aa4.66□□□□□ -1.66
NEK4-201ENST00000233027 KRTAP4-8A0A0G2JLE6 195 aa4.66□□□□□ -1.66
NEK4-201ENST00000233027 KRTAP4-8Q9BYQ9 185 aa4.66□□□□□ -1.66
NEK4-201ENST00000233027 KRTAP12-4P60329 112 aa4.65□□□□□ -1.67
NEK4-201ENST00000233027 KRTAP9-8Q9BYQ0 159 aa4.6□□□□□ -1.67
NEK4-201ENST00000233027 SPRR5A0A1B0GTR4 108 aa4.58□□□□□ -1.68
NEK4-201ENST00000233027 LPAP08519 4548 aa4.55□□□□□ -1.68
NEK4-201ENST00000233027 HSPG2P98160 4391 aa4.55□□□□□ -1.68
NEK4-201ENST00000233027 SPRR2DP22532 72 aa4.51□□□□□ -1.69
NEK4-201ENST00000233027 PKD1P98161 4303 aa4.51□□□□□ -1.69
NEK4-201ENST00000233027 LCE2CQ5TA81 110 aa4.49□□□□□ -1.69
NEK4-201ENST00000233027 KRTAP9-3Q9BYQ3 159 aa4.49□□□□□ -1.69
NEK4-201ENST00000233027 LCE2BO14633 110 aa4.49□□□□□ -1.69
NEK4-201ENST00000233027 RYR2Q92736 4967 aa4.48□□□□□ -1.69
NEK4-201ENST00000233027 KRTAP4-7Q9BYR0 210 aa4.47□□□□□ -1.69
NEK4-201ENST00000233027 HYDINQ4G0P3 5121 aa4.46□□□□□ -1.7
NEK4-201ENST00000233027 LCE3DQ9BYE3 92 aa4.44□□□□□ -1.7
NEK4-201ENST00000233027 PKHD1P08F94 4074 aa4.42□□□□□ -1.7
NEK4-201ENST00000233027 LRP2P98164 4655 aa4.41□□□□□ -1.7
NEK4-201ENST00000233027 TNXBP22105 4242 aa4.4□□□□□ -1.71
NEK4-201ENST00000233027 KIAA1109Q2LD37 5005 aa4.4□□□□□ -1.71
NEK4-201ENST00000233027 PKHD1L1Q86WI1 4243 aa4.39□□□□□ -1.71
NEK4-201ENST00000233027 HERC1Q15751 4861 aa4.38□□□□□ -1.71
NEK4-201ENST00000233027 LCE3EQ5T5B0 92 aa4.35□□□□□ -1.71
NEK4-201ENST00000233027 MT1LQ93083 61 aa4.32□□□□□ -1.72
NEK4-201ENST00000233027 KRTAP19-3Q7Z4W3 81 aa4.3□□□□□ -1.72
NEK4-201ENST00000233027 MT1EP04732 61 aa4.27□□□□□ -1.73
NEK4-201ENST00000233027 KRTAP19-2Q3LHN2 52 aa4.25□□□□□ -1.73
NEK4-201ENST00000233027 LOC100996750A0A140TA64 210 aa4.23□□□□□ -1.73
NEK4-201ENST00000233027 HERC2O95714 4834 aa4.23□□□□□ -1.73
NEK4-201ENST00000233027 KMT2CQ8NEZ4 4911 aaKnown RBP4.21□□□□□ -1.74
NEK4-201ENST00000233027 FLGP20930 4061 aaPredicted RBP4.17□□□□□ -1.74
NEK4-201ENST00000233027 KRTAP4-3Q9BYR4 195 aa4.16□□□□□ -1.74
NEK4-201ENST00000233027 MUC17Q685J3 4493 aa4.15□□□□□ -1.74
NEK4-201ENST00000233027 PRM1P04553 51 aa4.15□□□□□ -1.74
NEK4-201ENST00000233027 MT1MQ8N339 61 aa4.14□□□□□ -1.75
NEK4-201ENST00000233027 LCE2DQ5TA82 110 aaPredicted RBP4.11□□□□□ -1.75
NEK4-201ENST00000233027 PCLOQ9Y6V0 5065 aa4.07□□□□□ -1.76
NEK4-201ENST00000233027 MT4P47944 62 aa4.07□□□□□ -1.76
NEK4-201ENST00000233027 BIRC6Q9NR09 4857 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms