RNA–Protein interactions for RNA: ENST00000212355.8

TGFBR3-201, Transcript of transforming growth factor beta receptor 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TGFBR3, Length 6,465 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TGFBR3-201ENST00000212355 ALMS1Q8TCU4 4167 aa5.95□□□□□ -1.46
TGFBR3-201ENST00000212355 DNAH9Q9NYC9 4486 aa5.92□□□□□ -1.46
TGFBR3-201ENST00000212355 DNAH1Q9P2D7 4330 aa5.92□□□□□ -1.46
TGFBR3-201ENST00000212355 KRTAP10-4P60372 401 aaPredicted RBP5.88□□□□□ -1.47
TGFBR3-201ENST00000212355 KRTAP12-3P60328 96 aa5.86□□□□□ -1.47
TGFBR3-201ENST00000212355 FRAS1Q86XX4 4008 aa5.83□□□□□ -1.48
TGFBR3-201ENST00000212355 DNAH2Q9P225 4427 aa5.79□□□□□ -1.48
TGFBR3-201ENST00000212355 ANK2Q01484 3957 aa5.78□□□□□ -1.48
TGFBR3-201ENST00000212355 PLECQ15149 4684 aaKnown RBP5.76□□□□□ -1.49
TGFBR3-201ENST00000212355 INE1O15225 51 aa5.75□□□□□ -1.49
TGFBR3-201ENST00000212355 KRTAP10-5P60370 271 aa5.73□□□□□ -1.49
TGFBR3-201ENST00000212355 KMT2AQ03164 3969 aa5.69□□□□□ -1.5
TGFBR3-201ENST00000212355 DNAH5Q8TE73 4624 aa5.68□□□□□ -1.5
TGFBR3-201ENST00000212355 DNAH11Q96DT5 4516 aa5.68□□□□□ -1.5
TGFBR3-201ENST00000212355 DNAH3Q8TD57 4116 aa5.67□□□□□ -1.5
TGFBR3-201ENST00000212355 KRTAP4-1Q9BYQ7 146 aa5.64□□□□□ -1.51
TGFBR3-201ENST00000212355 LYSTQ99698 3801 aa5.63□□□□□ -1.51
TGFBR3-201ENST00000212355 DNAH8Q96JB1 4490 aa5.62□□□□□ -1.51
TGFBR3-201ENST00000212355 STARD9Q9P2P6 4700 aa5.58□□□□□ -1.52
TGFBR3-201ENST00000212355 KRTAP8-1Q8IUC2 63 aa5.57□□□□□ -1.52
TGFBR3-201ENST00000212355 CMYA5Q8N3K9 4069 aa5.57□□□□□ -1.52
TGFBR3-201ENST00000212355 VPS13BQ7Z7G8 4022 aa5.56□□□□□ -1.52
TGFBR3-201ENST00000212355 DNAH17Q9UFH2 4485 aa5.51□□□□□ -1.53
TGFBR3-201ENST00000212355 VPS13DQ5THJ4 4388 aa5.49□□□□□ -1.53
TGFBR3-201ENST00000212355 LRP1BQ9NZR2 4599 aa5.47□□□□□ -1.53
TGFBR3-201ENST00000212355 FAT2Q9NYQ8 4349 aa5.47□□□□□ -1.53
TGFBR3-201ENST00000212355 FAT1Q14517 4588 aa5.45□□□□□ -1.54
TGFBR3-201ENST00000212355 MT1HP80294 61 aa5.44□□□□□ -1.54
TGFBR3-201ENST00000212355 PRKDCP78527 4128 aaKnown RBP5.41□□□□□ -1.54
TGFBR3-201ENST00000212355 DNAH6Q9C0G6 4158 aa5.37□□□□□ -1.55
TGFBR3-201ENST00000212355 KRTAP23-1A1A580 65 aa5.36□□□□□ -1.55
TGFBR3-201ENST00000212355 DNAH7Q8WXX0 4024 aa5.36□□□□□ -1.55
TGFBR3-201ENST00000212355 DYNC2H1Q8NCM8 4307 aaKnown RBP5.35□□□□□ -1.55
TGFBR3-201ENST00000212355 DNHD1Q96M86 4753 aa5.35□□□□□ -1.55
TGFBR3-201ENST00000212355 SACSQ9NZJ4 4579 aa5.35□□□□□ -1.55
TGFBR3-201ENST00000212355 DYNC1H1Q14204 4646 aaKnown RBP5.32□□□□□ -1.56
TGFBR3-201ENST00000212355 MT2AP02795 61 aa5.32□□□□□ -1.56
TGFBR3-201ENST00000212355 KRTAP19-5Q3LI72 72 aa5.32□□□□□ -1.56
TGFBR3-201ENST00000212355 MT1FP04733 61 aa5.29□□□□□ -1.56
TGFBR3-201ENST00000212355 APOBP04114 4563 aaKnown RBP5.26□□□□□ -1.57
TGFBR3-201ENST00000212355 HECTD4Q9Y4D8 3996 aa5.25□□□□□ -1.57
TGFBR3-201ENST00000212355 SPRR2FQ96RM1 72 aa5.24□□□□□ -1.57
TGFBR3-201ENST00000212355 MYCBP2O75592 4640 aa5.15□□□□□ -1.58
TGFBR3-201ENST00000212355 SPRR2GQ9BYE4 73 aa5.15□□□□□ -1.58
TGFBR3-201ENST00000212355 RYR1P21817 5038 aa5.14□□□□□ -1.59
TGFBR3-201ENST00000212355 LCE3CQ5T5A8 94 aa5.13□□□□□ -1.59
TGFBR3-201ENST00000212355 KRTAP10-7P60409 375 aaPredicted RBP5.13□□□□□ -1.59
TGFBR3-201ENST00000212355 KRTAP17-1Q9BYP8 105 aa5.12□□□□□ -1.59
TGFBR3-201ENST00000212355 FAT3Q8TDW7 4589 aa5.1□□□□□ -1.59
TGFBR3-201ENST00000212355 LPAP08519 4548 aa5.08□□□□□ -1.6
TGFBR3-201ENST00000212355 LRP1Q07954 4544 aaKnown RBP5.05□□□□□ -1.6
TGFBR3-201ENST00000212355 LCE3BQ5TA77 95 aa5.03□□□□□ -1.6
TGFBR3-201ENST00000212355 MT1GP13640 62 aa4.94□□□□□ -1.62
TGFBR3-201ENST00000212355 PKHD1P08F94 4074 aa4.93□□□□□ -1.62
TGFBR3-201ENST00000212355 SPRR2EP22531 72 aa4.92□□□□□ -1.62
TGFBR3-201ENST00000212355 SPRR2BP35325 72 aa4.92□□□□□ -1.62
TGFBR3-201ENST00000212355 SPRR2AP35326 72 aa4.92□□□□□ -1.62
TGFBR3-201ENST00000212355 KRTAP4-8A0A0G2JLE6 195 aa4.91□□□□□ -1.62
TGFBR3-201ENST00000212355 KRTAP4-8Q9BYQ9 185 aa4.91□□□□□ -1.62
TGFBR3-201ENST00000212355 HSPG2P98160 4391 aa4.88□□□□□ -1.63
TGFBR3-201ENST00000212355 PKD1P98161 4303 aa4.86□□□□□ -1.63
TGFBR3-201ENST00000212355 KRTAP19-1Q8IUB9 90 aa4.86□□□□□ -1.63
TGFBR3-201ENST00000212355 RYR3Q15413 4870 aa4.86□□□□□ -1.63
TGFBR3-201ENST00000212355 MT1XP80297 61 aa4.84□□□□□ -1.64
TGFBR3-201ENST00000212355 HYDINQ4G0P3 5121 aa4.82□□□□□ -1.64
TGFBR3-201ENST00000212355 KRTAP12-4P60329 112 aa4.76□□□□□ -1.65
TGFBR3-201ENST00000212355 KRTAP4-7Q9BYR0 210 aa4.75□□□□□ -1.65
TGFBR3-201ENST00000212355 SPRR2DP22532 72 aa4.72□□□□□ -1.65
TGFBR3-201ENST00000212355 MT1BP07438 61 aa4.72□□□□□ -1.65
TGFBR3-201ENST00000212355 TNXBP22105 4242 aa4.71□□□□□ -1.66
TGFBR3-201ENST00000212355 LRP2P98164 4655 aa4.71□□□□□ -1.66
TGFBR3-201ENST00000212355 KRTAP9-8Q9BYQ0 159 aa4.68□□□□□ -1.66
TGFBR3-201ENST00000212355 KRTAP19-8Q3LI54 63 aa4.67□□□□□ -1.66
TGFBR3-201ENST00000212355 PKHD1L1Q86WI1 4243 aa4.67□□□□□ -1.66
TGFBR3-201ENST00000212355 LCE2BO14633 110 aa4.63□□□□□ -1.67
TGFBR3-201ENST00000212355 KIAA1109Q2LD37 5005 aa4.55□□□□□ -1.68
TGFBR3-201ENST00000212355 LCE2CQ5TA81 110 aa4.55□□□□□ -1.68
TGFBR3-201ENST00000212355 KRTAP9-3Q9BYQ3 159 aa4.54□□□□□ -1.68
TGFBR3-201ENST00000212355 LOC100996750A0A140TA64 210 aa4.51□□□□□ -1.69
TGFBR3-201ENST00000212355 LCE3DQ9BYE3 92 aa4.5□□□□□ -1.69
TGFBR3-201ENST00000212355 KMT2CQ8NEZ4 4911 aaKnown RBP4.5□□□□□ -1.69
TGFBR3-201ENST00000212355 KRTAP19-4Q3LI73 84 aa4.49□□□□□ -1.69
TGFBR3-201ENST00000212355 FLGP20930 4061 aaPredicted RBP4.45□□□□□ -1.7
TGFBR3-201ENST00000212355 KRTAP4-3Q9BYR4 195 aa4.44□□□□□ -1.7
TGFBR3-201ENST00000212355 RYR2Q92736 4967 aa4.43□□□□□ -1.7
TGFBR3-201ENST00000212355 MT4P47944 62 aa4.43□□□□□ -1.7
TGFBR3-201ENST00000212355 HERC2O95714 4834 aa4.42□□□□□ -1.7
TGFBR3-201ENST00000212355 SPRR5A0A1B0GTR4 108 aa4.4□□□□□ -1.7
TGFBR3-201ENST00000212355 FSIP2Q5CZC0 6907 aa4.4□□□□□ -1.71
TGFBR3-201ENST00000212355 LCE3EQ5T5B0 92 aa4.37□□□□□ -1.71
TGFBR3-201ENST00000212355 MT1LQ93083 61 aa4.36□□□□□ -1.71
TGFBR3-201ENST00000212355 KRTAP19-3Q7Z4W3 81 aa4.34□□□□□ -1.72
TGFBR3-201ENST00000212355 LCE2DQ5TA82 110 aaPredicted RBP4.33□□□□□ -1.72
TGFBR3-201ENST00000212355 MT1EP04732 61 aa4.3□□□□□ -1.72
TGFBR3-201ENST00000212355 PRM1P04553 51 aa4.29□□□□□ -1.72
TGFBR3-201ENST00000212355 PCLOQ9Y6V0 5065 aa4.29□□□□□ -1.72
TGFBR3-201ENST00000212355 KRTAP4-9Q9BYQ8 210 aa4.26□□□□□ -1.73
TGFBR3-201ENST00000212355 KRTAP19-2Q3LHN2 52 aa4.26□□□□□ -1.73
TGFBR3-201ENST00000212355 SYNE2Q8WXH0 6885 aaKnown RBP4.24□□□□□ -1.73
TGFBR3-201ENST00000212355 KRTAP9-2Q9BYQ4 174 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms