RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 POLQO75417 2590 aa1.1□□□□□ -2.23
VIM-210ENST00000637053 SPTA1P02549 2419 aa1.1□□□□□ -2.23
VIM-210ENST00000637053 SPTBN5Q9NRC6 3674 aaKnown RBP1.1□□□□□ -2.23
VIM-210ENST00000637053 COL6A5A8TX70 2615 aa1.1□□□□□ -2.23
VIM-210ENST00000637053 VPS13DQ5THJ4 4388 aa1.1□□□□□ -2.23
VIM-210ENST00000637053 CFAP46Q8IYW2 2715 aa1.09□□□□□ -2.23
VIM-210ENST00000637053 OTOGQ6ZRI0 2925 aa1.09□□□□□ -2.23
VIM-210ENST00000637053 AKAP6Q13023 2319 aa1.09□□□□□ -2.23
VIM-210ENST00000637053 MKI67P46013 3256 aaKnown RBP1.09□□□□□ -2.23
VIM-210ENST00000637053 NOTCH1P46531 2555 aa1.09□□□□□ -2.24
VIM-210ENST00000637053 CELSR3Q9NYQ7 3312 aa1.09□□□□□ -2.24
VIM-210ENST00000637053 ACACBO00763 2458 aa1.09□□□□□ -2.24
VIM-210ENST00000637053 CFAP54Q96N23 3096 aa1.09□□□□□ -2.24
VIM-210ENST00000637053 AKAP13Q12802 2813 aa1.08□□□□□ -2.24
VIM-210ENST00000637053 NCOR1O75376 2440 aa1.08□□□□□ -2.24
VIM-210ENST00000637053 MUC3AQ02505 3323 aa1.08□□□□□ -2.24
VIM-210ENST00000637053 J3QKU1 62 aa1.08□□□□□ -2.24
VIM-210ENST00000637053 KRTAP21-3Q3LHN1 58 aa1.08□□□□□ -2.24
VIM-210ENST00000637053 BRCA2P51587 3418 aa1.08□□□□□ -2.24
VIM-210ENST00000637053 SPTAN1Q13813 2472 aaKnown RBP1.08□□□□□ -2.24
VIM-210ENST00000637053 LRRK2Q5S007 2527 aa1.08□□□□□ -2.24
VIM-210ENST00000637053 CCDC168Q8NDH2 2452 aa1.07□□□□□ -2.24
VIM-210ENST00000637053 UBR5O95071 2799 aaPredicted RBP1.07□□□□□ -2.24
VIM-210ENST00000637053 ANKHD1Q8IWZ3 2542 aaKnown RBP1.07□□□□□ -2.24
VIM-210ENST00000637053 KRTAP4-1Q9BYQ7 146 aa1.07□□□□□ -2.24
VIM-210ENST00000637053 MYCBP2O75592 4640 aa1.07□□□□□ -2.24
VIM-210ENST00000637053 ATRQ13535 2644 aa1.07□□□□□ -2.24
VIM-210ENST00000637053 WDFY4Q6ZS81 3184 aa1.07□□□□□ -2.24
VIM-210ENST00000637053 CHD9Q3L8U1 2897 aa1.06□□□□□ -2.24
VIM-210ENST00000637053 VWFP04275 2813 aa1.06□□□□□ -2.24
VIM-210ENST00000637053 C5orf42Q9H799 3197 aa1.06□□□□□ -2.24
VIM-210ENST00000637053 CENPFP49454 3210 aa1.06□□□□□ -2.24
VIM-210ENST00000637053 SPEGQ15772 3267 aa1.06□□□□□ -2.24
VIM-210ENST00000637053 FBN2P35556 2912 aa1.05□□□□□ -2.24
VIM-210ENST00000637053 ACACAQ13085 2346 aa1.05□□□□□ -2.24
VIM-210ENST00000637053 HTTP42858 3142 aa1.05□□□□□ -2.24
VIM-210ENST00000637053 EP300Q09472 2414 aaPredicted RBP1.05□□□□□ -2.24
VIM-210ENST00000637053 APELAP0DMC3 54 aa1.05□□□□□ -2.24
VIM-210ENST00000637053 CRCT1Q9UGL9 99 aa1.05□□□□□ -2.24
VIM-210ENST00000637053 DCHS1Q96JQ0 3298 aa1.04□□□□□ -2.24
VIM-210ENST00000637053 MGAQ8IWI9 3026 aa1.04□□□□□ -2.24
VIM-210ENST00000637053 CREBBPQ92793 2442 aa1.04□□□□□ -2.24
VIM-210ENST00000637053 M0QZ58 72 aa1.04□□□□□ -2.24
VIM-210ENST00000637053 STATHP02808 62 aa1.04□□□□□ -2.24
VIM-210ENST00000637053 FCGBPQ9Y6R7 5405 aaPredicted RBP1.04□□□□□ -2.24
VIM-210ENST00000637053 TEX15Q9BXT5 2789 aa1.04□□□□□ -2.24
VIM-210ENST00000637053 TENM2Q9NT68 2774 aa1.04□□□□□ -2.24
VIM-210ENST00000637053 UBR4Q5T4S7 5183 aa1.04□□□□□ -2.24
VIM-210ENST00000637053 STAB1Q9NY15 2570 aa1.03□□□□□ -2.24
VIM-210ENST00000637053 SACSQ9NZJ4 4579 aa1.03□□□□□ -2.24
VIM-210ENST00000637053 NBEAL2Q6ZNJ1 2754 aa1.03□□□□□ -2.24
VIM-210ENST00000637053 CSMD3Q7Z407 3707 aa1.03□□□□□ -2.24
VIM-210ENST00000637053 KRTAP10-4P60372 401 aaPredicted RBP1.03□□□□□ -2.24
VIM-210ENST00000637053 FLNCQ14315 2725 aa1.03□□□□□ -2.24
VIM-210ENST00000637053 IGSF10Q6WRI0 2623 aa1.02□□□□□ -2.25
VIM-210ENST00000637053 RELNP78509 3460 aa1.02□□□□□ -2.25
VIM-210ENST00000637053 USP34Q70CQ2 3546 aa1.02□□□□□ -2.25
VIM-210ENST00000637053 DEFB1P60022 68 aa1.02□□□□□ -2.25
VIM-210ENST00000637053 ZFYVE26Q68DK2 2539 aa1.02□□□□□ -2.25
VIM-210ENST00000637053 CRYBG3Q68DQ2 2970 aa1.02□□□□□ -2.25
VIM-210ENST00000637053 TLN1Q9Y490 2541 aaKnown RBP1.02□□□□□ -2.25
VIM-210ENST00000637053 ANK2Q01484 3957 aa1.02□□□□□ -2.25
VIM-210ENST00000637053 ASPMQ8IZT6 3477 aa1.02□□□□□ -2.25
VIM-210ENST00000637053 DMBT1Q9UGM3 2413 aaPredicted RBP1.01□□□□□ -2.25
VIM-210ENST00000637053 NBASA2RRP1 2371 aa1.01□□□□□ -2.25
VIM-210ENST00000637053 PRUNE2Q8WUY3 3088 aa1.01□□□□□ -2.25
VIM-210ENST00000637053 NCOR2Q9Y618 2525 aa1.01□□□□□ -2.25
VIM-210ENST00000637053 PRKDCP78527 4128 aaKnown RBP1.01□□□□□ -2.25
VIM-210ENST00000637053 BOD1L1Q8NFC6 3051 aa1.01□□□□□ -2.25
VIM-210ENST00000637053 PKD1L1Q8TDX9 2849 aa1.01□□□□□ -2.25
VIM-210ENST00000637053 KRTAP12-3P60328 96 aa1□□□□□ -2.25
VIM-210ENST00000637053 NBEAL1Q6ZS30 2694 aa1□□□□□ -2.25
VIM-210ENST00000637053 FLNAP21333 2647 aaKnown RBP1□□□□□ -2.25
VIM-210ENST00000637053 DNAH8Q96JB1 4490 aa0.99□□□□□ -2.25
VIM-210ENST00000637053 FAM186AA6NE01 2351 aa0.99□□□□□ -2.25
VIM-210ENST00000637053 H0YGG7 62 aa0.99□□□□□ -2.25
VIM-210ENST00000637053 H3BUX3 64 aa0.99□□□□□ -2.25
VIM-210ENST00000637053 TENM4Q6N022 2769 aa0.99□□□□□ -2.25
VIM-210ENST00000637053 CEP295Q9C0D2 2601 aa0.98□□□□□ -2.25
VIM-210ENST00000637053 RHPN1-AS1Q9BWJ2 59 aa0.98□□□□□ -2.25
VIM-210ENST00000637053 UTP20O75691 2785 aaKnown RBP0.98□□□□□ -2.25
VIM-210ENST00000637053 XIRP2A4UGR9 3374 aa0.97□□□□□ -2.25
VIM-210ENST00000637053 DEFB135Q30KP9 77 aa0.97□□□□□ -2.25
VIM-210ENST00000637053 RIF1Q5UIP0 2472 aaKnown RBP0.97□□□□□ -2.25
VIM-210ENST00000637053 CELSR1Q9NYQ6 3014 aa0.97□□□□□ -2.25
VIM-210ENST00000637053 APC2O95996 2303 aa0.97□□□□□ -2.25
VIM-210ENST00000637053 DYNC2H1Q8NCM8 4307 aaKnown RBP0.96□□□□□ -2.26
VIM-210ENST00000637053 PDZD2O15018 2839 aa0.96□□□□□ -2.26
VIM-210ENST00000637053 HTN1P15515 57 aa0.96□□□□□ -2.26
VIM-210ENST00000637053 COX14Q96I36 57 aa0.96□□□□□ -2.26
VIM-210ENST00000637053 PCLOQ9Y6V0 5065 aa0.96□□□□□ -2.26
VIM-210ENST00000637053 MTORP42345 2549 aa0.96□□□□□ -2.26
VIM-210ENST00000637053 LAMA3Q16787 3333 aa0.96□□□□□ -2.26
VIM-210ENST00000637053 FRYQ5TBA9 3013 aa0.96□□□□□ -2.26
VIM-210ENST00000637053 LYSTQ99698 3801 aa0.96□□□□□ -2.26
VIM-210ENST00000637053 VPS13BQ7Z7G8 4022 aa0.96□□□□□ -2.26
VIM-210ENST00000637053 USP9YO00507 2555 aaPredicted RBP0.96□□□□□ -2.26
VIM-210ENST00000637053 FAT2Q9NYQ8 4349 aa0.96□□□□□ -2.26
VIM-210ENST00000637053 BSNQ9UPA5 3926 aa0.96□□□□□ -2.26
VIM-210ENST00000637053 WDR87Q6ZQQ6 2873 aa0.95□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms