RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 ATMQ13315 3056 aa8.92□□□□□ -0.98
COL5A1-208ENST00000618395 KRTAP11-1Q8IUC1 163 aa8.88□□□□□ -0.99
COL5A1-208ENST00000618395 IGSF10Q6WRI0 2623 aa8.88□□□□□ -0.99
COL5A1-208ENST00000618395 CELSR2Q9HCU4 2923 aa8.86□□□□□ -0.99
COL5A1-208ENST00000618395 KRTAP10-3P60369 221 aa8.86□□□□□ -0.99
COL5A1-208ENST00000618395 PLAC8Q9NZF1 115 aa8.85□□□□□ -0.99
COL5A1-208ENST00000618395 C10orf95Q9H7T3 257 aa8.85□□□□□ -0.99
COL5A1-208ENST00000618395 TNRC18O15417 2968 aaPredicted RBP8.82□□□□□ -1
COL5A1-208ENST00000618395 MYO15AQ9UKN7 3530 aa8.78□□□□□ -1
COL5A1-208ENST00000618395 EYSQ5T1H1 3165 aa8.78□□□□□ -1
COL5A1-208ENST00000618395 KRTAP4-16G5E9R7 235 aaPredicted RBP8.78□□□□□ -1
COL5A1-208ENST00000618395 FLNCQ14315 2725 aa8.77□□□□□ -1.01
COL5A1-208ENST00000618395 ASPMQ8IZT6 3477 aa8.76□□□□□ -1.01
COL5A1-208ENST00000618395 SPTBN5Q9NRC6 3674 aaKnown RBP8.74□□□□□ -1.01
COL5A1-208ENST00000618395 DCHS2Q6V1P9 2916 aa8.72□□□□□ -1.01
COL5A1-208ENST00000618395 HIVEP1P15822 2718 aa8.72□□□□□ -1.01
COL5A1-208ENST00000618395 NIPBLQ6KC79 2804 aaeCLIP8.71□□□□□ -1.02
COL5A1-208ENST00000618395 NF1P21359 2839 aa8.68□□□□□ -1.02
COL5A1-208ENST00000618395 PP632Q6XCG6 107 aa8.66□□□□□ -1.02
COL5A1-208ENST00000618395 TNP1P09430 55 aa8.62□□□□□ -1.03
COL5A1-208ENST00000618395 FBN2P35556 2912 aa8.61□□□□□ -1.03
COL5A1-208ENST00000618395 NOTCH2NLQ7Z3S9 236 aa8.6□□□□□ -1.03
COL5A1-208ENST00000618395 LAMA5O15230 3695 aa8.6□□□□□ -1.03
COL5A1-208ENST00000618395 ZANQ9Y493 2812 aa8.6□□□□□ -1.03
COL5A1-208ENST00000618395 LOC400499M0QZD8 3231 aa8.58□□□□□ -1.04
COL5A1-208ENST00000618395 PDZD2O15018 2839 aa8.57□□□□□ -1.04
COL5A1-208ENST00000618395 P0C880 135 aa8.56□□□□□ -1.04
COL5A1-208ENST00000618395 CELSR1Q9NYQ6 3014 aa8.56□□□□□ -1.04
COL5A1-208ENST00000618395 TENM1Q9UKZ4 2725 aa8.55□□□□□ -1.04
COL5A1-208ENST00000618395 KRTAP1-3Q8IUG1 177 aa8.52□□□□□ -1.05
COL5A1-208ENST00000618395 KRTAP1-1Q07627 177 aa8.46□□□□□ -1.06
COL5A1-208ENST00000618395 Q5VSD8 79 aa8.44□□□□□ -1.06
COL5A1-208ENST00000618395 DCHS1Q96JQ0 3298 aa8.43□□□□□ -1.06
COL5A1-208ENST00000618395 H0YAA0 97 aa8.41□□□□□ -1.06
COL5A1-208ENST00000618395 RPS29P62273 56 aaKnown RBP8.39□□□□□ -1.07
COL5A1-208ENST00000618395 KRTAP1-5Q9BYS1 174 aa8.36□□□□□ -1.07
COL5A1-208ENST00000618395 RELNP78509 3460 aa8.33□□□□□ -1.08
COL5A1-208ENST00000618395 SRRM2Q9UQ35 2752 aaKnown RBP8.32□□□□□ -1.08
COL5A1-208ENST00000618395 SPENQ96T58 3664 aaKnown RBP8.31□□□□□ -1.08
COL5A1-208ENST00000618395 HRNRQ86YZ3 2850 aaPredicted RBP8.31□□□□□ -1.08
COL5A1-208ENST00000618395 DMDP11532 3685 aa8.29□□□□□ -1.08
COL5A1-208ENST00000618395 MXRA5Q9NR99 2828 aa8.29□□□□□ -1.08
COL5A1-208ENST00000618395 TGP01266 2768 aa8.28□□□□□ -1.08
COL5A1-208ENST00000618395 CSMD1Q96PZ7 3565 aa8.28□□□□□ -1.08
COL5A1-208ENST00000618395 KRTAP10-1P60331 282 aa8.27□□□□□ -1.09
COL5A1-208ENST00000618395 TENM3Q9P273 2699 aa8.27□□□□□ -1.09
COL5A1-208ENST00000618395 KRTAP10-8P60410 259 aa8.26□□□□□ -1.09
COL5A1-208ENST00000618395 NBPF19A0A087WUL8 3843 aa8.24□□□□□ -1.09
COL5A1-208ENST00000618395 SMG1Q96Q15 3661 aaKnown RBP8.23□□□□□ -1.09
COL5A1-208ENST00000618395 KRTAP10-2P60368 255 aa8.21□□□□□ -1.1
COL5A1-208ENST00000618395 ZFHX4Q86UP3 3567 aa8.17□□□□□ -1.1
COL5A1-208ENST00000618395 Q6ZRN7 208 aaPredicted RBP8.14□□□□□ -1.11
COL5A1-208ENST00000618395 VWFP04275 2813 aa8.12□□□□□ -1.11
COL5A1-208ENST00000618395 PKD1L1Q8TDX9 2849 aa8.1□□□□□ -1.11
COL5A1-208ENST00000618395 KRTAP13-1Q8IUC0 172 aa8.08□□□□□ -1.12
COL5A1-208ENST00000618395 CUBNO60494 3623 aa8.05□□□□□ -1.12
COL5A1-208ENST00000618395 KRTAP7-1Q8IUC3 87 aa8.04□□□□□ -1.12
COL5A1-208ENST00000618395 KRTAP13-2Q52LG2 175 aa8.01□□□□□ -1.13
COL5A1-208ENST00000618395 ZFHX3Q15911 3703 aa7.94□□□□□ -1.14
COL5A1-208ENST00000618395 COL7A1Q02388 2944 aa7.93□□□□□ -1.14
COL5A1-208ENST00000618395 TENM4Q6N022 2769 aa7.93□□□□□ -1.14
COL5A1-208ENST00000618395 SVEP1Q4LDE5 3571 aa7.91□□□□□ -1.14
COL5A1-208ENST00000618395 INE1O15225 51 aa7.85□□□□□ -1.15
COL5A1-208ENST00000618395 TENM2Q9NT68 2774 aa7.83□□□□□ -1.16
COL5A1-208ENST00000618395 MUC3AQ02505 3323 aa7.79□□□□□ -1.16
COL5A1-208ENST00000618395 VPS13CQ709C8 3753 aa7.78□□□□□ -1.16
COL5A1-208ENST00000618395 PRO2289Q9P1D8 64 aa7.75□□□□□ -1.17
COL5A1-208ENST00000618395 KRTAP12-2P59991 146 aa7.73□□□□□ -1.17
COL5A1-208ENST00000618395 TPRXLQ17RH7 258 aa7.73□□□□□ -1.17
COL5A1-208ENST00000618395 FBN1P35555 2871 aaKnown RBP7.69□□□□□ -1.18
COL5A1-208ENST00000618395 KRTAP13-4Q3LI77 160 aa7.69□□□□□ -1.18
COL5A1-208ENST00000618395 CSMD2Q7Z408 3487 aa7.65□□□□□ -1.19
COL5A1-208ENST00000618395 MEGF8Q7Z7M0 2845 aa7.64□□□□□ -1.19
COL5A1-208ENST00000618395 XP32Q5T750 250 aa7.62□□□□□ -1.19
COL5A1-208ENST00000618395 KRTAP15-1Q3LI76 137 aa7.6□□□□□ -1.19
COL5A1-208ENST00000618395 OTOGQ6ZRI0 2925 aa7.56□□□□□ -1.2
COL5A1-208ENST00000618395 KRTAP12-1P59990 96 aa7.54□□□□□ -1.2
COL5A1-208ENST00000618395 KRTAP13-3Q3SY46 172 aa7.53□□□□□ -1.2
COL5A1-208ENST00000618395 TRRAPQ9Y4A5 3859 aa7.53□□□□□ -1.2
COL5A1-208ENST00000618395 FBN3Q75N90 2809 aa7.51□□□□□ -1.21
COL5A1-208ENST00000618395 A0A1B0GVY2 172 aa7.5□□□□□ -1.21
COL5A1-208ENST00000618395 AKAP9Q99996 3911 aa7.49□□□□□ -1.21
COL5A1-208ENST00000618395 BSNQ9UPA5 3926 aa7.46□□□□□ -1.22
COL5A1-208ENST00000618395 KRTAP1-4P0C5Y4 121 aa7.44□□□□□ -1.22
COL5A1-208ENST00000618395 KRTAP10-10P60014 251 aa7.43□□□□□ -1.22
COL5A1-208ENST00000618395 CSMD3Q7Z407 3707 aa7.37□□□□□ -1.23
COL5A1-208ENST00000618395 KRTAP21-3Q3LHN1 58 aa7.29□□□□□ -1.24
COL5A1-208ENST00000618395 KRTAP23-1A1A580 65 aa7.15□□□□□ -1.27
COL5A1-208ENST00000618395 KRTAP10-6P60371 365 aaPredicted RBP7.06□□□□□ -1.28
COL5A1-208ENST00000618395 ZNF469Q96JG9 3925 aaPredicted RBP7.04□□□□□ -1.28
COL5A1-208ENST00000618395 KRTAP3-1Q9BYR8 98 aa7.03□□□□□ -1.28
COL5A1-208ENST00000618395 KRTAP10-12P60413 245 aa6.76□□□□□ -1.33
COL5A1-208ENST00000618395 ALMS1Q8TCU4 4167 aa6.72□□□□□ -1.33
COL5A1-208ENST00000618395 LYSTQ99698 3801 aa6.69□□□□□ -1.34
COL5A1-208ENST00000618395 KRTAP3-2Q9BYR7 98 aa6.68□□□□□ -1.34
COL5A1-208ENST00000618395 KRTAP12-3P60328 96 aa6.65□□□□□ -1.34
COL5A1-208ENST00000618395 CRCT1Q9UGL9 99 aa6.62□□□□□ -1.35
COL5A1-208ENST00000618395 KRTAP3-3Q9BYR6 98 aa6.59□□□□□ -1.35
COL5A1-208ENST00000618395 KRTAP10-5P60370 271 aa6.49□□□□□ -1.37
COL5A1-208ENST00000618395 LCE3AQ5TA76 89 aa6.46□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms